public CDisplayGraph(double[] Values)
{
SimpleForm NewWindow = new SimpleForm();
Series SeriesPos = new Series();
SeriesPos.ShadowOffset = 1;
for (int IdxValue = 0; IdxValue < Values.Length; IdxValue++)
{
SeriesPos.Points.AddY(Values[IdxValue]);
SeriesPos.Points[IdxValue].Color = Color.Black;
}
ChartArea CurrentChartArea = new ChartArea();
CurrentChartArea.BorderColor = Color.Black;
NewWindow.chartForSimpleForm.ChartAreas.Add(CurrentChartArea);
CurrentChartArea.Axes[0].MajorGrid.Enabled = false;
CurrentChartArea.AxisX.LabelStyle.Format = "N2";
NewWindow.chartForSimpleForm.TextAntiAliasingQuality = TextAntiAliasingQuality.High;
CurrentChartArea.BackGradientStyle = GradientStyle.TopBottom;
CurrentChartArea.BackSecondaryColor = Color.White;
SeriesPos.ChartType = SeriesChartType.Column;
NewWindow.chartForSimpleForm.Series.Add(SeriesPos);
NewWindow.chartForSimpleForm.ChartAreas[0].CursorX.IsUserEnabled = true;
NewWindow.chartForSimpleForm.ChartAreas[0].CursorX.IsUserSelectionEnabled = true;
NewWindow.chartForSimpleForm.ChartAreas[0].AxisX.ScaleView.Zoomable = true;
NewWindow.chartForSimpleForm.ChartAreas[0].AxisX.ScrollBar.IsPositionedInside = true;
// if (GlobalInfo.OptionsWindow.checkBoxDisplayHistoStats.Checked)
{
//StripLine AverageLine = new StripLine();
//AverageLine.BackColor = Color.Black;
//AverageLine.IntervalOffset = Pos.Mean();
//AverageLine.StripWidth = double.Epsilon;
//CurrentChartArea.AxisX.StripLines.Add(AverageLine);
//AverageLine.Text = String.Format("{0:0.###}", AverageLine.IntervalOffset);
//StripLine StdLine = new StripLine();
//StdLine.BackColor = Color.FromArgb(64, Color.Black);
//double Std = Pos.Std();
//StdLine.IntervalOffset = AverageLine.IntervalOffset - 0.5 * Std;
//StdLine.StripWidth = Std;
//CurrentChartArea.AxisX.StripLines.Add(StdLine);
//AverageLine.StripWidth = 0.0001;
}
NewWindow.Show();
NewWindow.chartForSimpleForm.Update();
NewWindow.chartForSimpleForm.Show();
NewWindow.Controls.AddRange(new System.Windows.Forms.Control[] { NewWindow.chartForSimpleForm });
NewWindow.Show();
}
private void DisplayHisto(object sender, EventArgs e)
{
if ((Parent.ListDescriptors == null) || (Parent.ListDescriptors.Count == 0)) return;
cExtendedList Pos = new cExtendedList();
cWell TempWell;
int NumberOfPlates = Parent.GlobalInfo.PlateListWindow.listBoxPlateNameToProcess.Items.Count;
// loop on all the plate
for (int PlateIdx = 0; PlateIdx < NumberOfPlates; PlateIdx++)
{
cPlate CurrentPlateToProcess = Parent.ListPlatesActive.GetPlate((string)Parent.GlobalInfo.PlateListWindow.listBoxPlateNameToProcess.Items[PlateIdx]);
for (int row = 0; row < Parent.Rows; row++)
for (int col = 0; col < Parent.Columns; col++)
{
TempWell = CurrentPlateToProcess.GetWell(col, row, false);
if (TempWell == null) continue;
else
{
if (TempWell.GetClass() == this.ClassForClassif)
Pos.Add(TempWell.ListDescriptors[Parent.ListDescriptors.CurrentSelectedDescriptor].GetValue());
}
}
}
if (Pos.Count == 0)
{
MessageBox.Show("No well of class " + Parent.SelectedClass + " selected !", "Error", MessageBoxButtons.OK, MessageBoxIcon.Error);
return;
}
List<double[]> HistoPos = Pos.CreateHistogram((int)Parent.GlobalInfo.OptionsWindow.numericUpDownHistoBin.Value);
if (HistoPos == null) return;
SimpleForm NewWindow = new SimpleForm();
Series SeriesPos = new Series();
SeriesPos.ShadowOffset = 1;
if (HistoPos.Count == 0) return;
for (int IdxValue = 0; IdxValue < HistoPos[0].Length; IdxValue++)
{
SeriesPos.Points.AddXY(HistoPos[0][IdxValue], HistoPos[1][IdxValue]);
SeriesPos.Points[IdxValue].ToolTip = HistoPos[1][IdxValue].ToString();
if (this.ClassForClassif == -1)
SeriesPos.Points[IdxValue].Color = Color.Black;
else
SeriesPos.Points[IdxValue].Color = Parent.GlobalInfo.GetColor(this.ClassForClassif);
}
ChartArea CurrentChartArea = new ChartArea();
CurrentChartArea.BorderColor = Color.Black;
NewWindow.chartForSimpleForm.ChartAreas.Add(CurrentChartArea);
CurrentChartArea.Axes[0].MajorGrid.Enabled = false;
CurrentChartArea.Axes[0].Title = Parent.ListDescriptors[Parent.ListDescriptors.CurrentSelectedDescriptor].GetName();
CurrentChartArea.Axes[1].Title = "Sum";
CurrentChartArea.AxisX.LabelStyle.Format = "N2";
NewWindow.chartForSimpleForm.TextAntiAliasingQuality = TextAntiAliasingQuality.High;
CurrentChartArea.BackGradientStyle = GradientStyle.TopBottom;
CurrentChartArea.BackColor = Parent.GlobalInfo.OptionsWindow.panel1.BackColor;
CurrentChartArea.BackSecondaryColor = Color.White;
SeriesPos.ChartType = SeriesChartType.Column;
// SeriesPos.Color = Parent.GetColor(1);
NewWindow.chartForSimpleForm.Series.Add(SeriesPos);
NewWindow.chartForSimpleForm.ChartAreas[0].CursorX.IsUserEnabled = true;
NewWindow.chartForSimpleForm.ChartAreas[0].CursorX.IsUserSelectionEnabled = true;
NewWindow.chartForSimpleForm.ChartAreas[0].AxisX.ScaleView.Zoomable = true;
NewWindow.chartForSimpleForm.ChartAreas[0].AxisX.ScrollBar.IsPositionedInside = true;
StripLine AverageLine = new StripLine();
AverageLine.BackColor = Color.Red;
AverageLine.IntervalOffset = this.ListDescriptors[Parent.ListDescriptors.CurrentSelectedDescriptor].GetValue();
AverageLine.StripWidth = 0.0001;
AverageLine.Text = String.Format("{0:0.###}", this.ListDescriptors[Parent.ListDescriptors.CurrentSelectedDescriptor].GetValue());
CurrentChartArea.AxisX.StripLines.Add(AverageLine);
if (Parent.GlobalInfo.OptionsWindow.checkBoxDisplayHistoStats.Checked)
{
StripLine NAverageLine = new StripLine();
NAverageLine.BackColor = Color.Black;
NAverageLine.IntervalOffset = Pos.Mean();
NAverageLine.StripWidth = 0.0001;// double.Epsilon;
CurrentChartArea.AxisX.StripLines.Add(NAverageLine);
NAverageLine.Text = String.Format("{0:0.###}", NAverageLine.IntervalOffset);
StripLine StdLine = new StripLine();
StdLine.BackColor = Color.FromArgb(64, Color.Black);
double Std = Pos.Std();
StdLine.IntervalOffset = NAverageLine.IntervalOffset - 0.5 * Std;
StdLine.StripWidth = Std;
CurrentChartArea.AxisX.StripLines.Add(StdLine);
//NAverageLine.StripWidth = 0.01;
}
Title CurrentTitle = new Title(this.StateForClassif + " - " + Parent.ListDescriptors[Parent.ListDescriptors.CurrentSelectedDescriptor].GetName() + " histogram.");
CurrentTitle.Font = new System.Drawing.Font("Arial", 11, FontStyle.Bold);
NewWindow.chartForSimpleForm.Titles.Add(CurrentTitle);
NewWindow.Text = CurrentTitle.Text;
NewWindow.Show();
NewWindow.chartForSimpleForm.Update();
NewWindow.chartForSimpleForm.Show();
NewWindow.Controls.AddRange(new System.Windows.Forms.Control[] { NewWindow.chartForSimpleForm });
return;
}
private SimpleForm BuildSSMD(int Desc)
{
List<double> Pos = new List<double>();
List<double> Neg = new List<double>();
List<cSimpleSignature> ZFactorList = new List<cSimpleSignature>();
cWell TempWell;
int NumberOfPlates = CompleteScreening.ListPlatesActive.Count;
// loop on all the plate
for (int PlateIdx = 0; PlateIdx < NumberOfPlates; PlateIdx++)
{
cPlate CurrentPlateToProcess = CompleteScreening.ListPlatesActive.GetPlate(CompleteScreening.ListPlatesActive[PlateIdx].Name);
Pos.Clear();
Neg.Clear();
for (int row = 0; row < CompleteScreening.Rows; row++)
for (int col = 0; col < CompleteScreening.Columns; col++)
{
TempWell = CurrentPlateToProcess.GetWell(col, row, true);
if (TempWell == null) continue;
else
{
if (TempWell.GetClass() == 0)
Pos.Add(TempWell.ListDescriptors[Desc].GetValue());
if (TempWell.GetClass() == 1)
Neg.Add(TempWell.ListDescriptors[Desc].GetValue());
}
}
double SSMDScore = (Mean(Pos.ToArray()) - Mean(Neg.ToArray())) / Math.Sqrt(std(Pos.ToArray()) * std(Pos.ToArray()) + std(Neg.ToArray()) * std(Neg.ToArray()));
GlobalInfo.ConsoleWriteLine(CurrentPlateToProcess.Name + ", SSMD = " + SSMDScore);
//cDescriptor TmpDesc = new cDescriptor(SSMDScore, CurrentPlateToProcess.Name);
cSimpleSignature TmpDesc = new cSimpleSignature(CurrentPlateToProcess.Name, SSMDScore);
ZFactorList.Add(TmpDesc);
}
Series CurrentSeries = new Series();
CurrentSeries.ChartType = SeriesChartType.Column;
CurrentSeries.ShadowOffset = 1;
Series SeriesLine = new Series();
SeriesLine.Name = "SeriesLine";
SeriesLine.ShadowOffset = 1;
SeriesLine.ChartType = SeriesChartType.Line;
int RealIdx = 0;
for (int IdxValue = 0; IdxValue < ZFactorList.Count; IdxValue++)
{
if (ZFactorList[IdxValue].AverageValue.ToString() == "NaN") continue;
CurrentSeries.Points.Add(ZFactorList[IdxValue].AverageValue);
CurrentSeries.Points[RealIdx].Label = string.Format("{0:0.###}", ZFactorList[IdxValue].AverageValue);
CurrentSeries.Points[RealIdx].Font = new Font("Arial", 10);
CurrentSeries.Points[RealIdx].ToolTip = ZFactorList[IdxValue].Name;
CurrentSeries.Points[RealIdx].AxisLabel = ZFactorList[IdxValue].Name;
SeriesLine.Points.Add(ZFactorList[IdxValue].AverageValue);
SeriesLine.Points[RealIdx].BorderColor = Color.Black;
SeriesLine.Points[RealIdx].MarkerStyle = MarkerStyle.Circle;
SeriesLine.Points[RealIdx].MarkerSize = 4;
RealIdx++;
}
SimpleForm NewWindow = new SimpleForm();
int thisWidth = 200 * RealIdx;
if (thisWidth > (int)GlobalInfo.OptionsWindow.numericUpDownMaximumWidth.Value)
thisWidth = (int)GlobalInfo.OptionsWindow.numericUpDownMaximumWidth.Value;
NewWindow.Width = thisWidth;
NewWindow.Height = 400;
NewWindow.Text = "SSMD";
ChartArea CurrentChartArea = new ChartArea();
CurrentChartArea.BorderColor = Color.Black;
CurrentChartArea.AxisX.Interval = 1;
NewWindow.chartForSimpleForm.Series.Add(CurrentSeries);
NewWindow.chartForSimpleForm.Series.Add(SeriesLine);
CurrentChartArea.AxisX.IsLabelAutoFit = true;
NewWindow.chartForSimpleForm.ChartAreas.Add(CurrentChartArea);
// CurrentChartArea.Axes[1].Maximum = 2;
CurrentChartArea.Axes[1].IsMarksNextToAxis = true;
CurrentChartArea.Axes[0].MajorGrid.Enabled = false;
CurrentChartArea.Axes[1].MajorGrid.Enabled = false;
NewWindow.chartForSimpleForm.TextAntiAliasingQuality = TextAntiAliasingQuality.High;
CurrentChartArea.BackGradientStyle = GradientStyle.TopBottom;
CurrentChartArea.BackColor = CompleteScreening.GlobalInfo.OptionsWindow.panel1.BackColor;
CurrentChartArea.BackSecondaryColor = Color.White;
Title CurrentTitle = new Title(CompleteScreening.ListDescriptors[Desc].GetName() + " SSMD");
CurrentTitle.Font = new System.Drawing.Font("Arial", 11, FontStyle.Bold);
NewWindow.chartForSimpleForm.Titles.Add(CurrentTitle);
return NewWindow;
}
private void zscoreSinglePlateToolStripMenuItem_Click(object sender, EventArgs e)
{
List<double> Pos = new List<double>();
List<double> Neg = new List<double>();
List<cSimpleSignature> ZFactorList = new List<cSimpleSignature>();
int NumDesc = CompleteScreening.ListDescriptors.Count;
cWell TempWell;
// loop on all the desciptors
for (int Desc = 0; Desc < NumDesc; Desc++)
{
Pos.Clear();
Neg.Clear();
if (CompleteScreening.ListDescriptors[Desc].IsActive() == false) continue;
for (int row = 0; row < CompleteScreening.Rows; row++)
for (int col = 0; col < CompleteScreening.Columns; col++)
{
TempWell = CompleteScreening.GetCurrentDisplayPlate().GetWell(col, row, true);
if (TempWell == null) continue;
else
{
if (TempWell.GetClass() == 0)
Pos.Add(TempWell.ListDescriptors[Desc].GetValue());
if (TempWell.GetClass() == 1)
Neg.Add(TempWell.ListDescriptors[Desc].GetValue());
}
}
if (Pos.Count < 3)
{
MessageBox.Show("No or not enough positive controls !", "Warning", MessageBoxButtons.OK, MessageBoxIcon.Exclamation);
return;
}
if (Neg.Count < 3)
{
MessageBox.Show("No or not enough negative controls !", "Warning", MessageBoxButtons.OK, MessageBoxIcon.Exclamation);
return;
}
double ZScore = 1 - 3 * (std(Pos.ToArray()) + std(Neg.ToArray())) / (Math.Abs(Mean(Pos.ToArray()) - Mean(Neg.ToArray())));
GlobalInfo.ConsoleWriteLine(CompleteScreening.ListDescriptors[Desc].GetName() + ", Z-Score = " + ZScore);
cSimpleSignature TmpDesc = new cSimpleSignature(CompleteScreening.ListDescriptors[Desc].GetName(), ZScore);
ZFactorList.Add(TmpDesc);
}
ZFactorList.Sort(delegate(cSimpleSignature p1, cSimpleSignature p2) { return p1.AverageValue.CompareTo(p2.AverageValue); });
Series CurrentSeries = new Series();
CurrentSeries.ChartType = SeriesChartType.Column;
CurrentSeries.ShadowOffset = 1;
Series SeriesLine = new Series();
SeriesLine.Name = "SeriesLine";
SeriesLine.ShadowOffset = 1;
SeriesLine.ChartType = SeriesChartType.Line;
int RealIdx = 0;
for (int IdxValue = 0; IdxValue < ZFactorList.Count; IdxValue++)
{
if (double.IsNaN(ZFactorList[IdxValue].AverageValue)) continue;
if (double.IsInfinity(ZFactorList[IdxValue].AverageValue)) continue;
CurrentSeries.Points.Add(ZFactorList[IdxValue].AverageValue);
CurrentSeries.Points[RealIdx].Label = string.Format("{0:0.###}", ZFactorList[IdxValue].AverageValue);
CurrentSeries.Points[RealIdx].Font = new Font("Arial", 10);
CurrentSeries.Points[RealIdx].ToolTip = ZFactorList[IdxValue].Name;
CurrentSeries.Points[RealIdx].AxisLabel = ZFactorList[IdxValue].Name;
SeriesLine.Points.Add(ZFactorList[IdxValue].AverageValue);
SeriesLine.Points[RealIdx].BorderColor = Color.Black;
SeriesLine.Points[RealIdx].MarkerStyle = MarkerStyle.Circle;
SeriesLine.Points[RealIdx].MarkerSize = 4;
RealIdx++;
}
SimpleForm NewWindow = new SimpleForm(CompleteScreening);
int thisWidth = 200 * RealIdx;
if (thisWidth > (int)GlobalInfo.OptionsWindow.numericUpDownMaximumWidth.Value) thisWidth = (int)GlobalInfo.OptionsWindow.numericUpDownMaximumWidth.Value;
NewWindow.Width = thisWidth;
NewWindow.Height = 400;
NewWindow.Text = "Z-factors";
ChartArea CurrentChartArea = new ChartArea();
CurrentChartArea.BorderColor = Color.Black;
CurrentChartArea.AxisX.Interval = 1;
NewWindow.chartForSimpleForm.Series.Add(CurrentSeries);
NewWindow.chartForSimpleForm.Series.Add(SeriesLine);
CurrentChartArea.AxisX.IsLabelAutoFit = true;
NewWindow.chartForSimpleForm.ChartAreas.Add(CurrentChartArea);
CurrentChartArea.Axes[1].Maximum = 2;
CurrentChartArea.Axes[1].IsMarksNextToAxis = true;
CurrentChartArea.Axes[0].MajorGrid.Enabled = false;
CurrentChartArea.Axes[1].MajorGrid.Enabled = false;
NewWindow.chartForSimpleForm.TextAntiAliasingQuality = TextAntiAliasingQuality.High;
CurrentChartArea.BackGradientStyle = GradientStyle.TopBottom;
CurrentChartArea.BackColor = CompleteScreening.GlobalInfo.OptionsWindow.panel1.BackColor;
CurrentChartArea.BackSecondaryColor = Color.White;
Title CurrentTitle = new Title(CompleteScreening.GetCurrentDisplayPlate().Name + " Z-factors");
CurrentTitle.Font = new System.Drawing.Font("Arial", 11, FontStyle.Bold);
NewWindow.chartForSimpleForm.Titles.Add(CurrentTitle);
NewWindow.Show();
NewWindow.chartForSimpleForm.Update();
NewWindow.chartForSimpleForm.Show();
NewWindow.Controls.AddRange(new System.Windows.Forms.Control[] { NewWindow.chartForSimpleForm });
}
private void stackedHistogramToolStripMenuItem_Click(object sender, EventArgs e)
{
if (CompleteScreening == null) return;
if ((CompleteScreening.ListDescriptors == null) || (CompleteScreening.ListDescriptors.Count == 0)) return;
cExtendedList[] ListValuesForHisto = new cExtendedList[GlobalInfo.GetNumberofDefinedClass()];
for (int i = 0; i < ListValuesForHisto.Length; i++)
ListValuesForHisto[i] = new cExtendedList();
cWell TempWell;
int NumberOfPlates = CompleteScreening.ListPlatesActive.Count;
double MinValue = double.MaxValue;
double MaxValue = double.MinValue;
double CurrentValue;
// loop on all the plate
for (int PlateIdx = 0; PlateIdx < NumberOfPlates; PlateIdx++)
{
cPlate CurrentPlateToProcess = CompleteScreening.ListPlatesActive.GetPlate(CompleteScreening.ListPlatesActive[PlateIdx].Name);
for (int row = 0; row < CompleteScreening.Rows; row++)
for (int col = 0; col < CompleteScreening.Columns; col++)
{
TempWell = CurrentPlateToProcess.GetWell(col, row, false);
if (TempWell == null) continue;
else
{
if (TempWell.GetClass() >= 0)
{
CurrentValue = TempWell.ListDescriptors[CompleteScreening.ListDescriptors.CurrentSelectedDescriptor].GetValue();
ListValuesForHisto[TempWell.GetClass()].Add(CurrentValue);
if (CurrentValue < MinValue) MinValue = CurrentValue;
if (CurrentValue > MaxValue) MaxValue = CurrentValue;
}
}
}
}
SimpleForm NewWindow = new SimpleForm();
List<double[]>[] HistoPos = new List<double[]>[ListValuesForHisto.Length];
Series[] SeriesPos = new Series[GlobalInfo.GetNumberofDefinedClass()];
for (int i = 0; i < ListValuesForHisto.Length; i++)
{
HistoPos[i] = new List<double[]>();
HistoPos[i] = ListValuesForHisto[i].CreateHistogram(MinValue, MaxValue, (int)GlobalInfo.OptionsWindow.numericUpDownHistoBin.Value);
SeriesPos[i] = new Series();
}
for (int i = 0; i < SeriesPos.Length; i++)
{
int Max = 0;
if (HistoPos[i].Count > 0)
Max = HistoPos[i][0].Length;
for (int IdxValue = 0; IdxValue < Max; IdxValue++)
{
SeriesPos[i].Points.AddXY(MinValue + ((MaxValue - MinValue) * IdxValue) / Max, HistoPos[i][1][IdxValue]);
SeriesPos[i].Points[IdxValue].ToolTip = HistoPos[i][1][IdxValue].ToString();
if (CompleteScreening.SelectedClass == -1)
SeriesPos[i].Points[IdxValue].Color = Color.Black;
else
SeriesPos[i].Points[IdxValue].Color = CompleteScreening.GlobalInfo.GetColor(i);
}
}
ChartArea CurrentChartArea = new ChartArea();
CurrentChartArea.BorderColor = Color.Black;
NewWindow.chartForSimpleForm.ChartAreas.Add(CurrentChartArea);
CurrentChartArea.Axes[0].MajorGrid.Enabled = false;
CurrentChartArea.Axes[0].Title = CompleteScreening.ListDescriptors[CompleteScreening.ListDescriptors.CurrentSelectedDescriptor].GetName();
CurrentChartArea.Axes[1].Title = "Sum";
CurrentChartArea.AxisX.LabelStyle.Format = "N2";
NewWindow.chartForSimpleForm.TextAntiAliasingQuality = TextAntiAliasingQuality.High;
CurrentChartArea.BackGradientStyle = GradientStyle.TopBottom;
CurrentChartArea.BackColor = CompleteScreening.GlobalInfo.OptionsWindow.panel1.BackColor;
CurrentChartArea.BackSecondaryColor = Color.White;
for (int i = 0; i < SeriesPos.Length; i++)
{
SeriesPos[i].ChartType = SeriesChartType.StackedColumn;
// SeriesPos[i].Color = CompleteScreening.GlobalInfo.GetColor(1);
NewWindow.chartForSimpleForm.Series.Add(SeriesPos[i]);
}
//Series SeriesGaussNeg = new Series();
//SeriesGaussNeg.ChartType = SeriesChartType.Spline;
//Series SeriesGaussPos = new Series();
//SeriesGaussPos.ChartType = SeriesChartType.Spline;
//if (HistoPos.Count != 0)
//{
// double[] HistoGaussPos = CreateGauss(Mean(Pos.ToArray()), std(Pos.ToArray()), HistoPos[0].Length);
// SeriesGaussPos.Color = Color.Black;
// SeriesGaussPos.BorderWidth = 2;
//}
//SeriesGaussNeg.Color = Color.Black;
//SeriesGaussNeg.BorderWidth = 2;
//NewWindow.chartForSimpleForm.Series.Add(SeriesGaussNeg);
//NewWindow.chartForSimpleForm.Series.Add(SeriesGaussPos);
NewWindow.chartForSimpleForm.ChartAreas[0].CursorX.IsUserEnabled = true;
NewWindow.chartForSimpleForm.ChartAreas[0].CursorX.IsUserSelectionEnabled = true;
NewWindow.chartForSimpleForm.ChartAreas[0].AxisX.ScaleView.Zoomable = true;
NewWindow.chartForSimpleForm.ChartAreas[0].AxisX.ScrollBar.IsPositionedInside = true;
Title CurrentTitle = null;
CurrentTitle = new Title(CompleteScreening.GetCurrentDisplayPlate().Name + " - " + CompleteScreening.ListDescriptors[CompleteScreening.ListDescriptors.CurrentSelectedDescriptor].GetName() + " Stacked histogram.");
CurrentTitle.Font = new System.Drawing.Font("Arial", 11, FontStyle.Bold);
NewWindow.chartForSimpleForm.Titles.Add(CurrentTitle);
NewWindow.Text = CurrentTitle.Text;
NewWindow.Show();
NewWindow.chartForSimpleForm.Update();
NewWindow.chartForSimpleForm.Show();
NewWindow.Controls.AddRange(new System.Windows.Forms.Control[] { NewWindow.chartForSimpleForm });
return;
}
private void scatterPointsToolStripMenuItem_Click(object sender, EventArgs e)
{
if (CompleteScreening == null) return;
Series CurrentSeries = new Series("ScatterPoints");
CurrentSeries.ShadowOffset = 1;
int Idx = 0;
int NumberOfPlates = CompleteScreening.ListPlatesActive.Count;
// loop on all the plate
for (int PlateIdx = 0; PlateIdx < NumberOfPlates; PlateIdx++)
{
cPlate CurrentPlateToProcess = CompleteScreening.ListPlatesActive.GetPlate(CompleteScreening.ListPlatesActive[PlateIdx].Name);
for (int IdxValue = 0; IdxValue < CompleteScreening.Columns; IdxValue++)
for (int IdxValue0 = 0; IdxValue0 < CompleteScreening.Rows; IdxValue0++)
{
cWell TmpWell = CurrentPlateToProcess.GetWell(IdxValue, IdxValue0, true);
if (TmpWell == null) continue;
CurrentSeries.Points.Add(TmpWell.ListDescriptors[comboBoxDescriptorToDisplay.SelectedIndex].GetValue());
CurrentSeries.Points[Idx].Color = TmpWell.GetColor();
CurrentSeries.Points[Idx].MarkerStyle = MarkerStyle.Circle;
CurrentSeries.Points[Idx].MarkerSize = 6;
if (!GlobalInfo.OptionsWindow.checkBoxDisplayFastPerformance.Checked) CurrentSeries.Points[Idx].ToolTip = TmpWell.AssociatedPlate.Name + "\n" + TmpWell.GetPosX() + "x" + TmpWell.GetPosY() + " :" + TmpWell.Name;
Idx++;
}
}
SimpleForm NewWindow = new SimpleForm(CompleteScreening);
if (Idx > (int)GlobalInfo.OptionsWindow.numericUpDownMaximumWidth.Value)
NewWindow.Width = (int)GlobalInfo.OptionsWindow.numericUpDownMaximumWidth.Value;
else
NewWindow.Width = Idx;
NewWindow.Height = 400;
ChartArea CurrentChartArea = new ChartArea();
CurrentChartArea.BorderColor = Color.Black;
CurrentChartArea.CursorX.IsUserSelectionEnabled = true;
NewWindow.chartForSimpleForm.ChartAreas.Add(CurrentChartArea);
NewWindow.chartForSimpleForm.TextAntiAliasingQuality = TextAntiAliasingQuality.High;
CurrentChartArea.BackColor = Color.FromArgb(164, 164, 164);
CurrentChartArea.Axes[1].Title = CompleteScreening.ListDescriptors[comboBoxDescriptorToDisplay.SelectedIndex].GetName();
CurrentChartArea.Axes[0].Title = "Index";
CurrentChartArea.Axes[0].MajorGrid.Enabled = false;
CurrentSeries.ChartType = SeriesChartType.Point;
if (GlobalInfo.OptionsWindow.checkBoxDisplayFastPerformance.Checked) CurrentSeries.ChartType = SeriesChartType.FastPoint;
NewWindow.chartForSimpleForm.Series.Add(CurrentSeries);
double Av = NewWindow.chartForSimpleForm.DataManipulator.Statistics.Mean("ScatterPoints");
double Std = Math.Sqrt(NewWindow.chartForSimpleForm.DataManipulator.Statistics.Variance("ScatterPoints", true));
StripLine StdLine = new StripLine();
StdLine.BackColor = Color.FromArgb(64, Color.BlanchedAlmond);
StdLine.IntervalOffset = Av - 1.5 * Std;
StdLine.StripWidth = 3 * Std;
CurrentChartArea.AxisY.StripLines.Add(StdLine);
StripLine AverageLine = new StripLine();
AverageLine.BackColor = Color.Red;
AverageLine.IntervalOffset = Av;
AverageLine.StripWidth = 0.0001;
AverageLine.Text = String.Format("{0:0.###}", Av);
CurrentChartArea.AxisY.StripLines.Add(AverageLine);
NewWindow.Text = "Scatter Point / " + Idx + " points";
NewWindow.Show();
NewWindow.chartForSimpleForm.Update();
NewWindow.chartForSimpleForm.Show();
NewWindow.Controls.AddRange(new System.Windows.Forms.Control[] { NewWindow.chartForSimpleForm });
return;
}
private void scatterPointsToolStripMenuItem1_Click(object sender, EventArgs e)
{
if (CompleteScreening == null) return;
SimpleForm NewWindow = new SimpleForm(CompleteScreening);
Series CurrentSeries = new Series("ScatterPoints");
CurrentSeries.ShadowOffset = 1;
int Idx = 0;
for (int IdxValue = 0; IdxValue < CompleteScreening.Columns; IdxValue++)
for (int IdxValue0 = 0; IdxValue0 < CompleteScreening.Rows; IdxValue0++)
{
cWell TmpWell = CompleteScreening.GetCurrentDisplayPlate().GetWell(IdxValue, IdxValue0, true);
if (TmpWell != null)
{
CurrentSeries.Points.Add(TmpWell.ListDescriptors[comboBoxDescriptorToDisplay.SelectedIndex].GetValue());
CurrentSeries.Points[Idx].Color = CompleteScreening.GetCurrentDisplayPlate().GetWell(IdxValue, IdxValue0, true).GetColor();
CurrentSeries.Points[Idx].ToolTip = TmpWell.GetPosX() + "x" + TmpWell.GetPosY() + " :" + TmpWell.Name;
CurrentSeries.Points[Idx].Tag = TmpWell;
CurrentSeries.Points[Idx].MarkerStyle = MarkerStyle.Circle;
CurrentSeries.Points[Idx].MarkerSize = 8;
Idx++;
}
}
if (CurrentSeries.Points.Count < 2)
{
MessageBox.Show("Statistical Analyses - More than one data point needed.", "Error", MessageBoxButtons.OK, MessageBoxIcon.Error);
return;
}
ChartArea CurrentChartArea = new ChartArea();
CurrentChartArea.CursorX.IsUserSelectionEnabled = true;
CurrentChartArea.BorderColor = Color.Black;
NewWindow.chartForSimpleForm.ChartAreas.Add(CurrentChartArea);
NewWindow.chartForSimpleForm.TextAntiAliasingQuality = TextAntiAliasingQuality.High;
CurrentChartArea.BackColor = Color.FromArgb(164, 164, 164);
CurrentChartArea.Axes[1].Title = CompleteScreening.ListDescriptors[CompleteScreening.ListDescriptors.CurrentSelectedDescriptor].GetName();
CurrentChartArea.Axes[0].Title = "Index";
CurrentChartArea.Axes[0].MajorGrid.Enabled = false;
CurrentSeries.ChartType = SeriesChartType.Point;
NewWindow.chartForSimpleForm.Series.Add(CurrentSeries);
double Av = NewWindow.chartForSimpleForm.DataManipulator.Statistics.Mean("ScatterPoints");
double Std = Math.Sqrt(NewWindow.chartForSimpleForm.DataManipulator.Statistics.Variance("ScatterPoints", true));
StripLine StdLine = new StripLine();
StdLine.BackColor = Color.FromArgb(64, Color.BlanchedAlmond);
StdLine.IntervalOffset = Av - 1.5 * Std;
StdLine.StripWidth = 3 * Std;
CurrentChartArea.AxisY.StripLines.Add(StdLine);
StripLine AverageLine = new StripLine();
AverageLine.BackColor = Color.Red;
AverageLine.IntervalOffset = Av;
AverageLine.StripWidth = 0.01;
AverageLine.Text = String.Format("{0:0.###}", Av);
CurrentChartArea.AxisY.StripLines.Add(AverageLine);
NewWindow.Text = "Scatter Point / " + CompleteScreening.GetCurrentDisplayPlate().GetNumberOfActiveWells() + " points";
NewWindow.Show();
NewWindow.chartForSimpleForm.Update();
NewWindow.chartForSimpleForm.Show();
NewWindow.Controls.AddRange(new System.Windows.Forms.Control[] { NewWindow.chartForSimpleForm });
return;
}
private void DisplayMatrix(double[,] Matrix, List<string> ListLabelX, List<string> ListLabelY, bool IsDisplayValues, string TitleForGraph, int SquareSize, bool IsToBeDisplayed, string PathName)
{
int IdxValue = 0;
Series CurrentSeries = new Series("Matrix");
CurrentSeries.ChartType = SeriesChartType.Point;
// loop on all the desciptors
for (int iDesc = 0; iDesc < ListLabelX.Count; iDesc++)
{
for (int jDesc = 0; jDesc < ListLabelY.Count; jDesc++)
{
CurrentSeries.Points.AddXY(iDesc + 1, jDesc + 1);
CurrentSeries.Points[IdxValue].MarkerStyle = MarkerStyle.Square;
CurrentSeries.Points[IdxValue].MarkerSize = SquareSize;
CurrentSeries.Points[IdxValue].BorderColor = Color.Black;
CurrentSeries.Points[IdxValue].BorderWidth = 1;
double Value = Matrix[iDesc, jDesc];
if (IsDisplayValues) CurrentSeries.Points[IdxValue].Label = string.Format("{0:0.###}", Math.Abs(Value));
CurrentSeries.Points[IdxValue].ToolTip = Math.Abs(Value) + " <=> | " + Matrix[iDesc, jDesc].ToString() + " |";
int ConvertedValue = (int)(Math.Abs(Value) * (CompleteScreening.GlobalInfo.LUT[0].Length - 1));
CurrentSeries.Points[IdxValue++].Color = Color.FromArgb(CompleteScreening.GlobalInfo.LUT[0][ConvertedValue], CompleteScreening.GlobalInfo.LUT[1][ConvertedValue], CompleteScreening.GlobalInfo.LUT[2][ConvertedValue]);
}
}
for (int iDesc = 0; iDesc < ListLabelX.Count * ListLabelX.Count; iDesc++)
CurrentSeries.Points[iDesc].AxisLabel = CompleteScreening.ListDescriptors.GetListNameActives()[iDesc / ListLabelX.Count];
SmartLabelStyle SStyle = new SmartLabelStyle();
SimpleForm NewWindow = new SimpleForm();
NewWindow.Height = SquareSize * ListLabelY.Count + 220;
NewWindow.Width = SquareSize * ListLabelX.Count + 245;
ChartArea CurrentChartArea = new ChartArea("Default");
for (int i = 0; i < CompleteScreening.ListDescriptors.GetListNameActives().Count; i++)
{
CustomLabel lblY = new CustomLabel();
lblY.ToPosition = i * 2 + 2;
lblY.Text = ListLabelY[i];
CurrentChartArea.AxisY.CustomLabels.Add(lblY);
}
CurrentChartArea.AxisY.LabelAutoFitStyle = LabelAutoFitStyles.LabelsAngleStep30;
CurrentChartArea.BorderColor = Color.Black;
NewWindow.chartForSimpleForm.ChartAreas.Add(CurrentChartArea);
CurrentSeries.SmartLabelStyle.Enabled = true;
NewWindow.chartForSimpleForm.TextAntiAliasingQuality = TextAntiAliasingQuality.High;
NewWindow.chartForSimpleForm.Series.Add(CurrentSeries);
CurrentChartArea.Axes[0].MajorGrid.Enabled = false;
CurrentChartArea.Axes[0].Minimum = 0;
CurrentChartArea.Axes[0].Maximum = ListLabelX.Count + 1;
CurrentChartArea.Axes[1].MajorGrid.Enabled = false;
CurrentChartArea.Axes[1].Minimum = 0;
CurrentChartArea.Axes[1].Maximum = ListLabelY.Count + 1;
CurrentChartArea.AxisX.Interval = 1;
CurrentChartArea.AxisY.Interval = 1;
Title CurrentTitle = new Title(TitleForGraph);
NewWindow.chartForSimpleForm.Titles.Add(CurrentTitle);
NewWindow.chartForSimpleForm.Titles[0].Font = new Font("Arial", 9);
if (IsToBeDisplayed) NewWindow.Show();
else
NewWindow.chartForSimpleForm.SaveImage(PathName + "_Matrix.emf", ChartImageFormat.Emf);
NewWindow.Text = TitleForGraph;
NewWindow.chartForSimpleForm.Update();
NewWindow.chartForSimpleForm.Show();
NewWindow.Controls.AddRange(new System.Windows.Forms.Control[] { NewWindow.chartForSimpleForm });
}
/// <summary>
/// This function displays the evolution of the average value of a certain descriptor through the plates, for a specified class
/// </summary>
/// <param name="sender"></param>
/// <param name="e"></param>
private void descriptorEvolutionToolStripMenuItem_Click(object sender, EventArgs e)
{
if (CompleteScreening == null) return;
FormClassification WindowClassification = new FormClassification(CompleteScreening);
WindowClassification.label1.Text = "Class";
WindowClassification.Text = CompleteScreening.ListDescriptors[CompleteScreening.ListDescriptors.CurrentSelectedDescriptor].GetName() + " evolution";
WindowClassification.buttonClassification.Text = "Display";
if (WindowClassification.ShowDialog() != System.Windows.Forms.DialogResult.OK) return;
int SelectedClass = WindowClassification.comboBoxForNeutralClass.SelectedIndex;
cExtendedList ListValuePerWell = new cExtendedList();
List<cDescriptor> List_Averages = new List<cDescriptor>();
cWell TempWell;
int Desc = this.comboBoxDescriptorToDisplay.SelectedIndex;
int NumberOfPlates = CompleteScreening.ListPlatesActive.Count;
Series CurrentSeries = new Series();
CurrentSeries.Name = "Series1";
CurrentSeries.ChartType = SeriesChartType.ErrorBar;
CurrentSeries.ShadowOffset = 1;
Series SeriesLine = new Series();
SeriesLine.Name = "SeriesLine";
SeriesLine.ShadowOffset = 1;
SeriesLine.ChartType = SeriesChartType.Line;
int RealPlateIdx = 0;
// loop on all the plates
for (int PlateIdx = 0; PlateIdx < NumberOfPlates; PlateIdx++)
{
cPlate CurrentPlateToProcess = CompleteScreening.ListPlatesActive.GetPlate(CompleteScreening.ListPlatesActive[PlateIdx].Name);
ListValuePerWell.Clear();
for (int row = 0; row < CompleteScreening.Rows; row++)
for (int col = 0; col < CompleteScreening.Columns; col++)
{
TempWell = CurrentPlateToProcess.GetWell(col, row, true);
if (TempWell == null) continue;
else
{
if (TempWell.GetClass() == SelectedClass)
{
double Val = TempWell.ListDescriptors[Desc].GetValue();
if (double.IsNaN(Val)) continue;
ListValuePerWell.Add(Val);
}
}
}
if (ListValuePerWell.Count >= 1)
{
DataPoint CurrentPt = new DataPoint();
CurrentPt.XValue = RealPlateIdx;
double[] Values = new double[3];
Values[0] = ListValuePerWell.Mean();
double Std = ListValuePerWell.Std();
if (double.IsInfinity(Std) || (double.IsNaN(Std))) Std = 0;
Values[1] = Values[0] - Std;
Values[2] = Values[0] + Std;
CurrentPt.YValues = Values;//ListValuePerWell.ToArray();
CurrentSeries.Points.Add(CurrentPt);
CurrentSeries.Points[RealPlateIdx].AxisLabel = CurrentPlateToProcess.Name;
CurrentSeries.Points[RealPlateIdx].Font = new Font("Arial", 8);
CurrentSeries.Points[RealPlateIdx].Color = CompleteScreening.GlobalInfo.GetColor(SelectedClass);
SeriesLine.Points.AddXY(RealPlateIdx, Values[0]);
SeriesLine.Points[RealPlateIdx].ToolTip = "Plate name: " + CurrentPlateToProcess.Name + "\nAverage: " + string.Format("{0:0.###}", Values[0]) + "\nStdev: " + string.Format("{0:0.###}", Std);
SeriesLine.Points[RealPlateIdx].Font = new Font("Arial", 8);
SeriesLine.Points[RealPlateIdx].BorderColor = Color.Black;
SeriesLine.Points[RealPlateIdx].MarkerStyle = MarkerStyle.Circle;
SeriesLine.Points[RealPlateIdx].MarkerSize = 8;
RealPlateIdx++;
}
}
SimpleForm NewWindow = new SimpleForm(CompleteScreening);
int thisWidth = 200 * SeriesLine.Points.Count;
if (thisWidth > 1500) thisWidth = 1500;
NewWindow.Width = thisWidth;
NewWindow.Height = 400;
ChartArea CurrentChartArea = new ChartArea();
CurrentChartArea.BorderColor = Color.Black;
NewWindow.chartForSimpleForm.ChartAreas.Add(CurrentChartArea);
CurrentChartArea.AxisX.Interval = 1;
CurrentChartArea.Axes[1].IsMarksNextToAxis = true;
CurrentChartArea.Axes[1].Title = CompleteScreening.ListDescriptors[CompleteScreening.ListDescriptors.CurrentSelectedDescriptor].GetName();
CurrentChartArea.Axes[0].MajorGrid.Enabled = false;
CurrentChartArea.Axes[1].MajorGrid.Enabled = false;
NewWindow.chartForSimpleForm.TextAntiAliasingQuality = TextAntiAliasingQuality.High;
CurrentChartArea.BackGradientStyle = GradientStyle.TopBottom;
CurrentChartArea.BackColor = CompleteScreening.GlobalInfo.OptionsWindow.panel1.BackColor;
CurrentChartArea.BackSecondaryColor = Color.White;
CurrentSeries["BoxPlotWhiskerPercentile"] = "false";
CurrentSeries["BoxPlotShowMedian"] = "false";
CurrentSeries["BoxPlotWhiskerPercentile"] = "false";
CurrentSeries["BoxPlotShowAverage"] = "false";
CurrentSeries["BoxPlotPercentile"] = "false";
CurrentChartArea.AxisX.IsLabelAutoFit = true;
NewWindow.chartForSimpleForm.Series.Add(CurrentSeries);
NewWindow.chartForSimpleForm.Series.Add(SeriesLine);
Title CurrentTitle = new Title("Class " + SelectedClass + " " + CurrentChartArea.Axes[1].Title + " evolution");
NewWindow.chartForSimpleForm.Titles.Add(CurrentTitle);
NewWindow.chartForSimpleForm.Titles[0].Font = new Font("Arial", 9);
NewWindow.Show();
NewWindow.chartForSimpleForm.Update();
NewWindow.chartForSimpleForm.Show();
NewWindow.Controls.AddRange(new System.Windows.Forms.Control[] { NewWindow.chartForSimpleForm });
return;
}
private void ComputeAndDisplayPCA(cExtendPlateList PlatesToProcess)
{
if (CompleteScreening == null) return;
FormClassification WindowClassification = new FormClassification(CompleteScreening);
WindowClassification.label1.Text = "Class of interest";
WindowClassification.Text = "PCA";
WindowClassification.buttonClassification.Text = "Process";
if (WindowClassification.ShowDialog() != System.Windows.Forms.DialogResult.OK) return;
int NeutralClass = WindowClassification.comboBoxForNeutralClass.SelectedIndex;
int NumWell = 0;
int NumWellForLearning = 0;
foreach (cPlate CurrentPlate in PlatesToProcess)
{
foreach (cWell CurrentWell in CurrentPlate.ListActiveWells)
{
if (CurrentWell.GetClass() == NeutralClass)
NumWellForLearning++;
}
NumWell += CurrentPlate.GetNumberOfActiveWells();
}
if (NumWellForLearning == 0)
{
MessageBox.Show("No well of the selected class identified", "Error", MessageBoxButtons.OK, MessageBoxIcon.Error);
return;
}
int NumDesc = CompleteScreening.GetNumberOfActiveDescriptor();
if (NumDesc <= 1)
{
MessageBox.Show("More than one descriptor are required for this operation", "Error", MessageBoxButtons.OK, MessageBoxIcon.Error);
return;
}
double[,] DataForPCA = new double[NumWellForLearning, CompleteScreening.GetNumberOfActiveDescriptor() + 1];
// return;
Matrix EigenVectors = PCAComputation(DataForPCA, NumWellForLearning, NumWell, NumDesc, NeutralClass, PlatesToProcess);
if (EigenVectors == null) return;
SimpleForm NewWindow = new SimpleForm(CompleteScreening);
Series CurrentSeries = new Series();
CurrentSeries.ShadowOffset = 1;
Matrix CurrentPt = new Matrix(NumWell, NumDesc);
DataForPCA = new double[NumWell, NumDesc + 1];
for (int desc = 0; desc < NumDesc; desc++)
{
if (CompleteScreening.ListDescriptors[desc].IsActive() == false) continue;
List<double> CurrentDesc = new List<double>();
foreach (cPlate CurrentPlate in PlatesToProcess)
{
for (int IdxValue = 0; IdxValue < CompleteScreening.Columns; IdxValue++)
for (int IdxValue0 = 0; IdxValue0 < CompleteScreening.Rows; IdxValue0++)
{
cWell TmpWell = CurrentPlate.GetWell(IdxValue, IdxValue0, true);
if (TmpWell == null) continue;
CurrentDesc.Add(TmpWell.ListDescriptors[desc].GetValue());
}
}
for (int i = 0; i < NumWell; i++)
DataForPCA[i, desc] = CurrentDesc[i];
}
int IDx = 0;
foreach (cPlate CurrentPlate in PlatesToProcess)
{
for (int IdxValue = 0; IdxValue < CompleteScreening.Columns; IdxValue++)
for (int IdxValue0 = 0; IdxValue0 < CompleteScreening.Rows; IdxValue0++)
{
cWell TmpWell = CurrentPlate.GetWell(IdxValue, IdxValue0, true);
if (TmpWell == null) continue;
DataForPCA[IDx++, NumDesc] = TmpWell.GetClass();
}
}
for (int i = 0; i < NumWell; i++)
for (int j = 0; j < NumDesc; j++) CurrentPt.addElement(i, j, DataForPCA[i, j]);
Matrix NewPt = new Matrix(NumWell, NumDesc);
NewPt = CurrentPt.multiply(EigenVectors);
double MinY = double.MaxValue, MaxY = double.MinValue;
for (int IdxValue0 = 0; IdxValue0 < NumWell; IdxValue0++)
{
double CurrentY = NewPt.getElement(IdxValue0, 1);
if (CurrentY < MinY) MinY = CurrentY;
if (CurrentY > MaxY) MaxY = CurrentY;
CurrentSeries.Points.AddXY(NewPt.getElement(IdxValue0, 0), CurrentY);
CurrentSeries.Points[IdxValue0].Color = CompleteScreening.GlobalInfo.GetColor((int)DataForPCA[IdxValue0, NumDesc]);
CurrentSeries.Points[IdxValue0].MarkerStyle = MarkerStyle.Circle;
CurrentSeries.Points[IdxValue0].MarkerSize = 8;
}
ChartArea CurrentChartArea = new ChartArea();
CurrentChartArea.BorderColor = Color.Black;
NewWindow.chartForSimpleForm.ChartAreas.Add(CurrentChartArea);
NewWindow.chartForSimpleForm.TextAntiAliasingQuality = TextAntiAliasingQuality.High;
CurrentChartArea.BackColor = Color.FromArgb(164, 164, 164);
string AxeName = "";
int IDxDesc = 0;
for (int Desc = 0; Desc < CompleteScreening.ListDescriptors.Count; Desc++)
{
if (CompleteScreening.ListDescriptors[Desc].IsActive() == false) continue;
AxeName += String.Format("{0:0.###}", EigenVectors.getElement(IDxDesc++, 0)) + "x" + CompleteScreening.ListDescriptors[Desc].GetName() + " + ";
// AxeName += String.Format("{0:0.##}", EigenVectors.getElement(CompleteScreening.ListDescriptors.Count - 1, 0)) + "x" + CompleteScreening.ListDescriptorName[CompleteScreening.ListDescriptors.Count - 1];
}
CurrentChartArea.Axes[0].Title = AxeName.Remove(AxeName.Length - 3);
CurrentChartArea.Axes[0].MajorGrid.Enabled = true;
AxeName = "";
IDxDesc = 0;
for (int Desc = 0; Desc < CompleteScreening.ListDescriptors.Count; Desc++)
{
if (CompleteScreening.ListDescriptors[Desc].IsActive() == false) continue;
AxeName += String.Format("{0:0.###}", EigenVectors.getElement(IDxDesc++, 1)) + "x" + CompleteScreening.ListDescriptors[Desc].GetName() + " + ";
}
//AxeName += String.Format("{0:0.##}", EigenVectors.getElement(CompleteScreening.ListDescriptors.Count - 1, 0)) + "x" + CompleteScreening.ListDescriptorName[CompleteScreening.ListDescriptors.Count - 1];
CurrentChartArea.Axes[1].Title = AxeName.Remove(AxeName.Length - 3);
CurrentChartArea.Axes[1].MajorGrid.Enabled = true;
CurrentChartArea.Axes[1].Minimum = MinY;
CurrentChartArea.Axes[1].Maximum = MaxY;
CurrentChartArea.AxisX.LabelStyle.Format = "N2";
CurrentChartArea.AxisY.LabelStyle.Format = "N2";
CurrentSeries.ChartType = SeriesChartType.Point;
if (GlobalInfo.OptionsWindow.checkBoxDisplayFastPerformance.Checked) CurrentSeries.ChartType = SeriesChartType.FastPoint;
NewWindow.chartForSimpleForm.Series.Add(CurrentSeries);
NewWindow.Text = "PCA";
NewWindow.Show();
NewWindow.chartForSimpleForm.Update();
NewWindow.chartForSimpleForm.Show();
NewWindow.Controls.AddRange(new System.Windows.Forms.Control[] { NewWindow.chartForSimpleForm });
}
private void ComputeAndDisplayMormalProbabilityPlot(bool IsFullScreen)
{
if (CompleteScreening == null) return;
int CurrentDescSel = comboBoxDescriptorToDisplay.SelectedIndex;
//if(CurrentDes
if (CompleteScreening.SelectedClass < 0) return;
int NumberOfPlates = CompleteScreening.ListPlatesActive.Count;
List<cPlate> PlatesToProcess = new List<cPlate>();
if (IsFullScreen)
{
for (int PlateIdx = 0; PlateIdx < NumberOfPlates; PlateIdx++)
{
cPlate CurrentPlateToProcess = CompleteScreening.ListPlatesActive.GetPlate(CompleteScreening.ListPlatesActive[PlateIdx].Name);
PlatesToProcess.Add(CurrentPlateToProcess);
}
}
else
{
PlatesToProcess.Add(CompleteScreening.GetCurrentDisplayPlate());
}
List<double> CurrentDesc = new List<double>();
// loop on all the plate
for (int PlateIdx = 0; PlateIdx < PlatesToProcess.Count; PlateIdx++)
{
cPlate CurrentPlateToProcess = PlatesToProcess[PlateIdx];
for (int IdxValue = 0; IdxValue < CompleteScreening.Columns; IdxValue++)
for (int IdxValue0 = 0; IdxValue0 < CompleteScreening.Rows; IdxValue0++)
{
cWell TmpWell = CompleteScreening.GetCurrentDisplayPlate().GetWell(IdxValue, IdxValue0, true);
if (TmpWell != null)
{
if (TmpWell.GetClass() == CompleteScreening.SelectedClass)
CurrentDesc.Add(TmpWell.ListDescriptors[CurrentDescSel].GetValue());
}
}
}
if (CurrentDesc.Count < 3)
{
MessageBox.Show("Not enough data of class " + CompleteScreening.SelectedClass, "Error", MessageBoxButtons.OK, MessageBoxIcon.Error);
return;
}
CurrentDesc.Sort();
double[] CenterNormDesc = new double[CurrentDesc.Count];
CenterNormDesc = MeanCenteringStdStandarization(CurrentDesc.ToArray());
int N = CurrentDesc.Count;
double[] CumulativeProba = new double[CurrentDesc.Count];
for (int i = 1; i < N - 1; i++)
CumulativeProba[i] = (i - 0.3175) / (N + 0.365);
CumulativeProba[N - 1] = Math.Pow(0.5, 1.0 / N);
CumulativeProba[0] = 1 - CumulativeProba[N - 1];
double[] PercentPointFunction = new double[CurrentDesc.Count];
for (int i = 0; i < N; i++)
PercentPointFunction[i] = alglib.normaldistr.invnormaldistribution(CumulativeProba[i]);
SimpleForm NewWindow = new SimpleForm();
NewWindow.Width = 600;
NewWindow.Height = 600;
NewWindow.Name = CompleteScreening.ListDescriptors[CurrentDescSel].GetName() + " normality plot : " + CompleteScreening.GetCurrentDisplayPlate().GetNumberOfActiveWells() + " points";
Series CurrentSeries = new Series();
CurrentSeries.ShadowOffset = 1;
for (int Pt = 0; Pt < CurrentDesc.Count; Pt++)
{
CurrentSeries.Points.AddXY(PercentPointFunction[Pt], CenterNormDesc[Pt]);
CurrentSeries.Points[Pt].Color = CompleteScreening.GlobalInfo.GetColor(CompleteScreening.SelectedClass);
CurrentSeries.Points[Pt].MarkerStyle = MarkerStyle.Circle;
CurrentSeries.Points[Pt].MarkerSize = 6;
}
ChartArea CurrentChartArea = new ChartArea();
CurrentChartArea.BorderColor = Color.Black;
NewWindow.chartForSimpleForm.ChartAreas.Add(CurrentChartArea);
NewWindow.chartForSimpleForm.TextAntiAliasingQuality = TextAntiAliasingQuality.High;
CurrentChartArea.BackColor = Color.FromArgb(164, 164, 164);
CurrentChartArea.Axes[0].MajorGrid.Enabled = true;
CurrentChartArea.Axes[1].MajorGrid.Enabled = true;
CurrentChartArea.AxisY.Minimum = CenterNormDesc[0];
CurrentChartArea.AxisY.Maximum = CenterNormDesc[CurrentDesc.Count - 1];
CurrentChartArea.AxisX.Minimum = -3;
CurrentChartArea.AxisX.Maximum = 3;
CurrentChartArea.AxisY.LabelStyle.Format = "N1";
CurrentChartArea.AxisX.LabelStyle.Format = "N1";
CurrentSeries.ChartType = SeriesChartType.Point;
NewWindow.chartForSimpleForm.Series.Add(CurrentSeries);
double Anderson_DarlingValue = Anderson_Darling(CurrentDesc.ToArray());
GlobalInfo.ConsoleWriteLine("Anderson-Darling Test: " + Anderson_DarlingValue);
Title AndersonLegend = new Title();
if (CurrentDesc.Count >= 5)
{
double Jarque_BeraValue;
alglib.jarqueberatest(CurrentDesc.ToArray(), CurrentDesc.Count, out Jarque_BeraValue);
GlobalInfo.ConsoleWriteLine("Jarque-Bera Test: " + Jarque_BeraValue);
// AndersonLegend.Text = "Jarque-Bera: " + String.Format("{0:0.####}", Jarque_BeraValue);
}
AndersonLegend.Text += "Anderson-Darling: " + String.Format("{0:0.##}", Anderson_DarlingValue);
AndersonLegend.Alignment = ContentAlignment.MiddleCenter;
AndersonLegend.Docking = Docking.Bottom;
AndersonLegend.TextOrientation = TextOrientation.Horizontal;
NewWindow.chartForSimpleForm.Titles.Add(AndersonLegend);
Title MainLegend = new Title();
MainLegend.Text = CompleteScreening.ListDescriptors[CurrentDescSel].GetName();
MainLegend.Docking = Docking.Top;
MainLegend.Font = new System.Drawing.Font("Arial", 11, FontStyle.Bold);
NewWindow.chartForSimpleForm.Titles.Add(MainLegend);
NewWindow.chartForSimpleForm.Series.Add("TrendLine");
NewWindow.chartForSimpleForm.Series["TrendLine"].ChartType = SeriesChartType.Line;
NewWindow.chartForSimpleForm.Series["TrendLine"].BorderWidth = 1;
NewWindow.chartForSimpleForm.Series["TrendLine"].Color = Color.Red;
// Line of best fit is linear
string typeRegression = "Linear";//"Exponential";//
// The number of days for Forecasting
string forecasting = "1";
// Show Error as a range chart.
string error = "false";
// Show Forecasting Error as a range chart.
string forecastingError = "false";
// Formula parameters
string parameters = typeRegression + ',' + forecasting + ',' + error + ',' + forecastingError;
NewWindow.chartForSimpleForm.Series[0].Sort(PointSortOrder.Ascending, "X");
// Create Forecasting Series.
NewWindow.chartForSimpleForm.DataManipulator.FinancialFormula(FinancialFormula.Forecasting, parameters, NewWindow.chartForSimpleForm.Series[0], NewWindow.chartForSimpleForm.Series["TrendLine"]);
// NewWindow.Text = "Normal Probability Plot / " +;
NewWindow.Show();
if (IsFullScreen)
{
NewWindow.Text = CurrentDesc.Count + " points";
}
else
{
NewWindow.Text = CompleteScreening.GetCurrentDisplayPlate().Name + " : " + CurrentDesc.Count + " points";
}
NewWindow.chartForSimpleForm.Update();
NewWindow.chartForSimpleForm.Show();
NewWindow.Controls.AddRange(new System.Windows.Forms.Control[] { NewWindow.chartForSimpleForm });
}
public void DisplayHistogram(bool IsFullScreen)
{
if (CompleteScreening == null) return;
if ((CompleteScreening.ListDescriptors == null) || (CompleteScreening.ListDescriptors.Count == 0)) return;
cExtendedList Pos = new cExtendedList();
cWell TempWell;
if (IsFullScreen == false)
{
for (int row = 0; row < CompleteScreening.Rows; row++)
for (int col = 0; col < CompleteScreening.Columns; col++)
{
TempWell = CompleteScreening.GetCurrentDisplayPlate().GetWell(col, row, false);
if (TempWell == null) continue;
else
{
if (TempWell.GetClass() == CompleteScreening.SelectedClass)
Pos.Add(TempWell.ListDescriptors[CompleteScreening.ListDescriptors.CurrentSelectedDescriptor].GetValue());
}
}
}
else
{
int NumberOfPlates = CompleteScreening.ListPlatesActive.Count;
// loop on all the plate
for (int PlateIdx = 0; PlateIdx < NumberOfPlates; PlateIdx++)
{
cPlate CurrentPlateToProcess = CompleteScreening.ListPlatesActive.GetPlate(CompleteScreening.ListPlatesActive[PlateIdx].Name);
for (int row = 0; row < CompleteScreening.Rows; row++)
for (int col = 0; col < CompleteScreening.Columns; col++)
{
TempWell = CurrentPlateToProcess.GetWell(col, row, false);
if (TempWell == null) continue;
else
{
if (TempWell.GetClass() == CompleteScreening.SelectedClass)
Pos.Add(TempWell.ListDescriptors[CompleteScreening.ListDescriptors.CurrentSelectedDescriptor].GetValue());
}
}
}
}
if (Pos.Count == 0)
{
MessageBox.Show("No well of class " + CompleteScreening.SelectedClass + " selected !", "Error", MessageBoxButtons.OK, MessageBoxIcon.Error);
return;
}
List<double[]> HistoPos = CreateHistogram(Pos.ToArray(), (int)GlobalInfo.OptionsWindow.numericUpDownHistoBin.Value);
SimpleForm NewWindow = new SimpleForm();
Series SeriesPos = new Series();
SeriesPos.ShadowOffset = 1;
if (HistoPos.Count == 0) return;
for (int IdxValue = 0; IdxValue < HistoPos[0].Length; IdxValue++)
{
SeriesPos.Points.AddXY(HistoPos[0][IdxValue], HistoPos[1][IdxValue]);
SeriesPos.Points[IdxValue].ToolTip = HistoPos[1][IdxValue].ToString();
if (CompleteScreening.SelectedClass == -1)
SeriesPos.Points[IdxValue].Color = Color.Black;
else
SeriesPos.Points[IdxValue].Color = CompleteScreening.GlobalInfo.GetColor(CompleteScreening.SelectedClass);
}
ChartArea CurrentChartArea = new ChartArea();
CurrentChartArea.BorderColor = Color.Black;
NewWindow.chartForSimpleForm.ChartAreas.Add(CurrentChartArea);
CurrentChartArea.Axes[0].MajorGrid.Enabled = false;
CurrentChartArea.Axes[0].Title = CompleteScreening.ListDescriptors[CompleteScreening.ListDescriptors.CurrentSelectedDescriptor].GetName();
CurrentChartArea.Axes[1].Title = "Sum";
CurrentChartArea.AxisX.LabelStyle.Format = "N2";
NewWindow.chartForSimpleForm.TextAntiAliasingQuality = TextAntiAliasingQuality.High;
CurrentChartArea.BackGradientStyle = GradientStyle.TopBottom;
CurrentChartArea.BackColor = CompleteScreening.GlobalInfo.OptionsWindow.panel1.BackColor;
CurrentChartArea.BackSecondaryColor = Color.White;
SeriesPos.ChartType = SeriesChartType.Column;
SeriesPos.Color = CompleteScreening.GlobalInfo.GetColor(1);
NewWindow.chartForSimpleForm.Series.Add(SeriesPos);
//Series SeriesGaussNeg = new Series();
//SeriesGaussNeg.ChartType = SeriesChartType.Spline;
//Series SeriesGaussPos = new Series();
//SeriesGaussPos.ChartType = SeriesChartType.Spline;
//if (HistoPos.Count != 0)
//{
// double[] HistoGaussPos = CreateGauss(Mean(Pos.ToArray()), std(Pos.ToArray()), HistoPos[0].Length);
// SeriesGaussPos.Color = Color.Black;
// SeriesGaussPos.BorderWidth = 2;
//}
//SeriesGaussNeg.Color = Color.Black;
//SeriesGaussNeg.BorderWidth = 2;
//NewWindow.chartForSimpleForm.Series.Add(SeriesGaussNeg);
// NewWindow.chartForSimpleForm.Series.Add(SeriesGaussPos);
NewWindow.chartForSimpleForm.ChartAreas[0].CursorX.IsUserEnabled = true;
NewWindow.chartForSimpleForm.ChartAreas[0].CursorX.IsUserSelectionEnabled = true;
NewWindow.chartForSimpleForm.ChartAreas[0].AxisX.ScaleView.Zoomable = true;
NewWindow.chartForSimpleForm.ChartAreas[0].AxisX.ScrollBar.IsPositionedInside = true;
if (GlobalInfo.OptionsWindow.checkBoxDisplayHistoStats.Checked)
{
StripLine AverageLine = new StripLine();
AverageLine.BackColor = Color.Black;
AverageLine.IntervalOffset = Pos.Mean();
AverageLine.StripWidth = double.Epsilon;
CurrentChartArea.AxisX.StripLines.Add(AverageLine);
AverageLine.Text = String.Format("{0:0.###}", AverageLine.IntervalOffset);
StripLine StdLine = new StripLine();
StdLine.BackColor = Color.FromArgb(64, Color.Black);
double Std = Pos.Std();
StdLine.IntervalOffset = AverageLine.IntervalOffset - 0.5 * Std;
StdLine.StripWidth = Std;
CurrentChartArea.AxisX.StripLines.Add(StdLine);
AverageLine.StripWidth = 0.0001;
}
Title CurrentTitle = null;
if (IsFullScreen)
CurrentTitle = new Title("Class " + CompleteScreening.SelectedClass + " - " + CompleteScreening.ListDescriptors[CompleteScreening.ListDescriptors.CurrentSelectedDescriptor].GetName() + " histogram.");
else
CurrentTitle = new Title("Class " + CompleteScreening.SelectedClass + " - " + CompleteScreening.GetCurrentDisplayPlate().Name + " - " + CompleteScreening.ListDescriptors[CompleteScreening.ListDescriptors.CurrentSelectedDescriptor].GetName() + " histogram.");
CurrentTitle.Font = new System.Drawing.Font("Arial", 11, FontStyle.Bold);
NewWindow.chartForSimpleForm.Titles.Add(CurrentTitle);
NewWindow.Text = CurrentTitle.Text;
NewWindow.Show();
NewWindow.chartForSimpleForm.Update();
NewWindow.chartForSimpleForm.Show();
NewWindow.Controls.AddRange(new System.Windows.Forms.Control[] { NewWindow.chartForSimpleForm });
return;
}
private void ComputeAndDisplayCorrelationMatrix(bool IsFullScreen, bool IsToBeDisplayed, string PathForImage)
{
if (CompleteScreening == null) return;
bool IsDisplayRanking = CompleteScreening.GlobalInfo.OptionsWindow.checkBoxCorrelationMatrixDisplayRanking.Checked;
//bool IsPearson = CompleteScreening.GlobalInfo.OptionsWindow.radioButtonPearson.Checked;
Boolean IsDisplayValues = false;
List<double>[] ListValueDesc = ExtractDesciptorAverageValuesList(IsFullScreen);
double[,] CorrelationMatrix = ComputeCorrelationMatrix(ListValueDesc);
if (CorrelationMatrix == null)
{
MessageBox.Show("Data error, correlation computation impossible !", "Error", MessageBoxButtons.OK, MessageBoxIcon.Error);
return;
}
// return;
List<string> NameX = CompleteScreening.ListDescriptors.GetListNameActives();
List<string> NameY = CompleteScreening.ListDescriptors.GetListNameActives();
string TitleForGraph = "";
if (GlobalInfo.OptionsWindow.radioButtonPearson.Checked) TitleForGraph = "Pearson ";
else if
(GlobalInfo.OptionsWindow.radioButtonSpearman.Checked) TitleForGraph = "Spearman's ";
else if
(GlobalInfo.OptionsWindow.radioButtonMIC.Checked) TitleForGraph = "MIC's ";
TitleForGraph += " correlation matrix.";
int SquareSize;
if (NameX.Count > 20)
SquareSize = 5;
else
SquareSize = 100 - ((10 * NameX.Count) / 3);
DisplayMatrix(CorrelationMatrix, NameX, NameY, IsDisplayValues, TitleForGraph, SquareSize, IsToBeDisplayed, PathForImage);
//-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
if (IsDisplayRanking == false) return;
Series CurrentSeries1 = new Series("Data1");
CurrentSeries1.ShadowOffset = 1;
CurrentSeries1.ChartType = SeriesChartType.Column;
int RealPosSelectedDesc = -1;
int realPos = 0;
for (int i = 0; i < CompleteScreening.ListDescriptors.Count; i++)
{
if (CompleteScreening.ListDescriptors[i].IsActive()) realPos++;
if (i == CompleteScreening.ListDescriptors.CurrentSelectedDescriptor)
{
RealPosSelectedDesc = i - 2;
break;
}
}
// loop on all the desciptors
int IdxValue = 0;
for (int iDesc = 0; iDesc < ListValueDesc.Length; iDesc++)
for (int jDesc = 0; jDesc < ListValueDesc.Length; jDesc++)
{
if (iDesc <= jDesc) continue;
CurrentSeries1.Points.Add(Math.Abs(CorrelationMatrix[iDesc, jDesc]));
if (GlobalInfo.OptionsWindow.checkBoxCorrelationRankChangeColorForActiveDesc.Checked)
{
if (CompleteScreening.ListDescriptors.CurrentSelectedDescriptor < CompleteScreening.ListDescriptors.GetListNameActives().Count)
{
if ((CompleteScreening.ListDescriptors.GetListNameActives()[iDesc] == CompleteScreening.ListDescriptors.GetListNameActives()[CompleteScreening.ListDescriptors.CurrentSelectedDescriptor]) ||
(CompleteScreening.ListDescriptors.GetListNameActives()[jDesc] == CompleteScreening.ListDescriptors.GetListNameActives()[CompleteScreening.ListDescriptors.CurrentSelectedDescriptor]))
CurrentSeries1.Points[IdxValue].Color = Color.LightGreen;
}
}
CurrentSeries1.Points[IdxValue].Label = string.Format("{0:0.###}", CorrelationMatrix[iDesc, jDesc]);
CurrentSeries1.Points[IdxValue].ToolTip = CompleteScreening.ListDescriptors.GetListNameActives()[iDesc] + "\n vs. \n" + CompleteScreening.ListDescriptors.GetListNameActives()[jDesc];
CurrentSeries1.Points[IdxValue].AxisLabel = CurrentSeries1.Points[IdxValue++].ToolTip;
}
SimpleForm NewWindow1 = new SimpleForm();
int thisWidth = CurrentSeries1.Points.Count * 100 + 200;
if (thisWidth > (int)GlobalInfo.OptionsWindow.numericUpDownMaximumWidth.Value)
thisWidth = (int)GlobalInfo.OptionsWindow.numericUpDownMaximumWidth.Value;
NewWindow1.Width = thisWidth;
//NewWindow1.Width = CurrentSeries1.Points.Count * 100 + 200;
ChartArea CurrentChartArea1 = new ChartArea("Default1");
CurrentChartArea1.BackGradientStyle = GradientStyle.TopBottom;
CurrentChartArea1.BackColor = CompleteScreening.GlobalInfo.OptionsWindow.panel1.BackColor;
CurrentChartArea1.BackSecondaryColor = Color.White;
CurrentChartArea1.BorderColor = Color.Black;
NewWindow1.chartForSimpleForm.ChartAreas.Add(CurrentChartArea1);
CurrentSeries1.SmartLabelStyle.Enabled = true;
CurrentChartArea1.AxisY.Title = "Absolute Correlation Coeff.";
NewWindow1.chartForSimpleForm.TextAntiAliasingQuality = TextAntiAliasingQuality.High;
NewWindow1.chartForSimpleForm.Series.Add(CurrentSeries1);
CurrentChartArea1.Axes[0].MajorGrid.Enabled = false;
CurrentChartArea1.Axes[1].MajorGrid.Enabled = false;
CurrentChartArea1.Axes[1].Minimum = 0;
CurrentChartArea1.Axes[1].Maximum = 1.2;
CurrentChartArea1.AxisX.Interval = 1;
NewWindow1.chartForSimpleForm.Series[0].Sort(PointSortOrder.Ascending, "Y");
if (GlobalInfo.OptionsWindow.radioButtonPearson.Checked) TitleForGraph = "Pearson's ";
else if (GlobalInfo.OptionsWindow.radioButtonPearson.Checked) TitleForGraph = "Spearman's ";
else if (GlobalInfo.OptionsWindow.radioButtonMIC.Checked) TitleForGraph = "MIC's ";
TitleForGraph += "correlation ranking";
Title CurrentTitle1 = new Title(TitleForGraph);
if (IsToBeDisplayed) NewWindow1.Show();
else
NewWindow1.chartForSimpleForm.SaveImage(PathForImage + "_Ranking.png", ChartImageFormat.Png);
NewWindow1.chartForSimpleForm.Titles.Add(CurrentTitle1);
NewWindow1.Text = "Quality Control: Corr. ranking";
NewWindow1.chartForSimpleForm.Update();
NewWindow1.Controls.AddRange(new System.Windows.Forms.Control[] { NewWindow1.chartForSimpleForm });
return;
}
public void DisplayCorrelationRanking(List<double>[] ListValueDesc, double[,] CorrelationMatrix)
{
string TitleForGraph;
Series CurrentSeries1 = new Series("Data1");
CurrentSeries1.ShadowOffset = 1;
CurrentSeries1.ChartType = SeriesChartType.Column;
int RealPosSelectedDesc = -1;
int realPos = 0;
for (int i = 0; i < cGlobalInfo.CurrentScreening.ListDescriptors.Count; i++)
{
if (cGlobalInfo.CurrentScreening.ListDescriptors[i].IsActive()) realPos++;
if (i == cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx)
{
RealPosSelectedDesc = i - 2;
break;
}
}
// loop on all the desciptors
int IdxValue = 0;
for (int iDesc = 0; iDesc < ListValueDesc.Length; iDesc++)
for (int jDesc = 0; jDesc < ListValueDesc.Length; jDesc++)
{
if (iDesc <= jDesc) continue;
CurrentSeries1.Points.Add(Math.Abs(CorrelationMatrix[iDesc, jDesc]));
if (cGlobalInfo.OptionsWindow.checkBoxCorrelationRankChangeColorForActiveDesc.Checked)
{
if (cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx < cGlobalInfo.CurrentScreening.ListDescriptors.GetListNameActives().Count)
{
if ((cGlobalInfo.CurrentScreening.ListDescriptors.GetListNameActives()[iDesc] == cGlobalInfo.CurrentScreening.ListDescriptors.GetListNameActives()[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx]) ||
(cGlobalInfo.CurrentScreening.ListDescriptors.GetListNameActives()[jDesc] == cGlobalInfo.CurrentScreening.ListDescriptors.GetListNameActives()[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx]))
CurrentSeries1.Points[IdxValue].Color = Color.LightGreen;
}
}
CurrentSeries1.Points[IdxValue].Label = string.Format("{0:0.###}", CorrelationMatrix[iDesc, jDesc]);
CurrentSeries1.Points[IdxValue].ToolTip = cGlobalInfo.CurrentScreening.ListDescriptors.GetListNameActives()[iDesc] + "\n vs. \n" + cGlobalInfo.CurrentScreening.ListDescriptors.GetListNameActives()[jDesc];
CurrentSeries1.Points[IdxValue].AxisLabel = CurrentSeries1.Points[IdxValue++].ToolTip;
}
SimpleForm NewWindow1 = new SimpleForm();
int thisWidth = CurrentSeries1.Points.Count * 100 + 200;
NewWindow1.Width = thisWidth;
//NewWindow1.Width = CurrentSeries1.Points.Count * 100 + 200;
ChartArea CurrentChartArea1 = new ChartArea("Default1");
CurrentChartArea1.BackColor = Color.White;
CurrentChartArea1.BorderColor = Color.Black;
NewWindow1.chartForSimpleForm.ChartAreas.Add(CurrentChartArea1);
CurrentSeries1.SmartLabelStyle.Enabled = true;
CurrentChartArea1.AxisY.Title = "Absolute Correlation Coeff.";
NewWindow1.chartForSimpleForm.TextAntiAliasingQuality = TextAntiAliasingQuality.High;
NewWindow1.chartForSimpleForm.Series.Add(CurrentSeries1);
CurrentChartArea1.Axes[0].MajorGrid.Enabled = false;
CurrentChartArea1.Axes[1].MajorGrid.Enabled = false;
CurrentChartArea1.Axes[1].Minimum = 0;
CurrentChartArea1.Axes[1].Maximum = 1.2;
CurrentChartArea1.AxisX.Interval = 1;
NewWindow1.chartForSimpleForm.Series[0].Sort(PointSortOrder.Ascending, "Y");
if (cGlobalInfo.OptionsWindow.radioButtonPearson.Checked) TitleForGraph = "Pearson's ";
else if (cGlobalInfo.OptionsWindow.radioButtonPearson.Checked) TitleForGraph = "Spearman's ";
else TitleForGraph = "MIC's ";
TitleForGraph += "correlation ranking";
Title CurrentTitle1 = new Title(TitleForGraph);
/* if (IsToBeDisplayed) */
NewWindow1.Show();
//else
// NewWindow1.chartForSimpleForm.SaveImage(PathForImage + "_Ranking.png", ChartImageFormat.Png);
NewWindow1.chartForSimpleForm.Titles.Add(CurrentTitle1);
NewWindow1.Text = "Quality Control: Corr. ranking";
NewWindow1.chartForSimpleForm.Update();
NewWindow1.Controls.AddRange(new System.Windows.Forms.Control[] { NewWindow1.chartForSimpleForm });
return;
}