public static void Initialize(IInputParameters parameters)
{
Canopy.Initialize(parameters);
TOroot = parameters.TOroot;
TOwood = parameters.TOwood;
TOfol = parameters.TOfol;
FolRet = parameters.FolRet;
HalfSat = parameters.HalfSat;
PsnTMin = parameters.PsnTMin;
GrMstSens = parameters.GrMstSens;
SLWmax = parameters.SLWmax;
SLWDel = parameters.SLWDel;
k = parameters.K;
CDDFolEnd = parameters.CDDFolEnd;
PsnAgeRed = parameters.PsnAgeRed;
GDDFolSt = parameters.GDDFolSt;
RtStRatio = parameters.RtStRatio;
MaintRespFrac = parameters.MaintResp;
DNSC = parameters.DNSC;
BFolResp = parameters.BFolResp;
Porosity = parameters.Porosity;
}
public SiteConditions(ActiveSite site, ICommunity initialCommunity)
{
cohorts = new SiteCohorts();
canopy = new Canopy();
if (PlugIn.HasSiteOutput[site] == true)
{
siteoutput = new SiteOutput(site);
estoutput = new EstablishmentOutput(site);
}
this.site = site;
foreach (ISpecies spc in PlugIn.modelCore.Species)
{
deadcohortages[spc] = new List <int>();
}
uint key = ComputeKey(initialCommunity.MapCode, PlugIn.ModelCore.Ecoregion[site].MapCode);
SiteConditions s = GetFromKey(key);
if (s != null)
{
return;
}
// If we don't have a sorted list of age cohorts for the initial
// community, make the list
List <Landis.Library.AgeOnlyCohorts.ICohort> sortedAgeCohorts;
if (!sortedCohorts.TryGetValue(initialCommunity.MapCode, out sortedAgeCohorts))
{
sortedAgeCohorts = PlugIn.RankCohortAgesOldToYoung(initialCommunity.Cohorts);
sortedCohorts[initialCommunity.MapCode] = sortedAgeCohorts;
}
hydrology = new Hydrology(PlugIn.modelCore.Ecoregion[site]);
forestfloor = new ForestFloor();
cohorts = new SiteCohorts();
establishment = new EstablishmentProbability(site);
if (sortedAgeCohorts.Count == 0)
{
return;
}
//PlugIn.ModelCore.UI.WriteLine("Making Biomass Cohorts "+ site);
BiomassSpinUp(sortedAgeCohorts, site);
initialSites[key] = this;
return;
}
public void SetCanopyLayers(SiteCohorts Cohorts, int MaxAge, int MaxBiom)
{
int NewNrOfLayersMax = Canopy.GetNumberOfLayers(MaxAge);
canopy = new List <CohortBiomass> [NewNrOfLayersMax + 1];
for (int canopylayer = 0; canopylayer < NewNrOfLayersMax + 1; canopylayer++)
{
canopy[canopylayer] = new List <CohortBiomass>();
}
if (Cohorts == null)
{
return;
}
foreach (ISpeciesCohorts spc in Cohorts)
{
foreach (Cohort cohort in spc)
{
// For initialization (all cohorts end up in one layer the first call regardless of biomass).
// This is not pretty but saves computation time.
if (MaxBiom < cohort.Biomass)
{
MaxBiom = cohort.Biomass;
}
// The max is not to allow a lower canopy layer than previously.
float ratio = (float)(cohort.Biomass) / MaxBiom;
int actuallayer = (int)(ratio * NewNrOfLayersMax) - 1;
if (MaxBiom > 0)
{
// only reset CanopyLayer if NumberOfLayersMax changed
if (NewNrOfLayersMax != NumberOfLayersMax)
{
cohort.CanopyLayer = Math.Min(NewNrOfLayersMax, Math.Max(cohort.CanopyLayer, actuallayer));
}
}
if (cohort.CanopyLayer > canopy.Length)
{
throw new System.Exception("cannot implement canopylayer = " + cohort.CanopyLayer + " number of canopy layers is " + canopy.Length + " MaxAge = " + MaxAge);
}
canopy[cohort.CanopyLayer].Add(new CohortBiomass(cohort));
}
}
NumberOfLayersMax = NewNrOfLayersMax;
}
public SiteConditions(ActiveSite site, ICommunity initialCommunity)
{
cohorts = new SiteCohorts();
canopy = new Canopy();
if (PlugIn.HasSiteOutput[site] == true)
{
siteoutput = new SiteOutput(site);
estoutput = new EstablishmentOutput(site);
}
this.site = site;
foreach (ISpecies spc in PlugIn.modelCore.Species)
{
deadcohortages[spc] = new List<int>();
}
uint key = ComputeKey(initialCommunity.MapCode, PlugIn.ModelCore.Ecoregion[site].MapCode);
SiteConditions s = GetFromKey(key);
if (s != null) return;
// If we don't have a sorted list of age cohorts for the initial
// community, make the list
List<Landis.Library.AgeOnlyCohorts.ICohort> sortedAgeCohorts;
if (!sortedCohorts.TryGetValue(initialCommunity.MapCode, out sortedAgeCohorts))
{
sortedAgeCohorts = PlugIn.RankCohortAgesOldToYoung(initialCommunity.Cohorts);
sortedCohorts[initialCommunity.MapCode] = sortedAgeCohorts;
}
hydrology = new Hydrology(PlugIn.modelCore.Ecoregion[site]);
forestfloor = new ForestFloor();
cohorts = new SiteCohorts();
establishment = new EstablishmentProbability(site);
if (sortedAgeCohorts.Count == 0) return;
//PlugIn.ModelCore.UI.WriteLine("Making Biomass Cohorts "+ site);
BiomassSpinUp(sortedAgeCohorts, site);
initialSites[key] = this;
return;
}