//---------------------------------------------------------------------
public override void Initialize()
{
Timestep = Parameters.Timestep;
time = Timestep;
CalibrateMode = Parameters.CalibrateMode;
CohortBiomass.SpinupMortalityFraction = Parameters.SpinupMortalityFraction;
//Initialize climate.
if (Parameters.ClimateConfigFile != null)
{
Climate.Initialize(Parameters.ClimateConfigFile, false, modelCore);
FutureClimateBaseYear = Climate.Future_MonthlyData.Keys.Min();
ClimateRegionData.Initialize(Parameters);
}
sufficientLight = Parameters.LightClassProbabilities;
SpeciesData.Initialize(Parameters);
EcoregionData.Initialize(Parameters);
DynamicInputs.Initialize(Parameters.DynamicInputFile, false);
SpeciesData.ChangeDynamicParameters(0); // Year 0
FireEffects.Initialize(Parameters);
//Outputs.Initialize(parameters);
MetadataHandler.InitializeMetadata(summaryLogFileName);
// Cohorts must be created before the base class is initialized
// because the base class' reproduction module uses the core's
// SuccessionCohorts property in its Initialization method.
Landis.Library.BiomassCohorts.Cohorts.Initialize(Timestep, new CohortBiomass());
// Initialize Reproduction routines:
Reproduction.SufficientResources = SufficientLight;
Reproduction.Establish = Establish;
Reproduction.AddNewCohort = AddNewCohort;
Reproduction.MaturePresent = MaturePresent;
Reproduction.PlantingEstablish = PlantingEstablish;
base.Initialize(modelCore, Parameters.SeedAlgorithm);
InitialBiomass.Initialize(Timestep);
Landis.Library.BiomassCohorts.Cohort.DeathEvent += CohortTotalMortality;
Landis.Library.BiomassCohorts.Cohort.PartialDeathEvent += CohortPartialMortality;
InitializeSites(Parameters.InitialCommunities, Parameters.InitialCommunitiesMap, modelCore);
}
public static void ChangeDynamicParameters(int year)
{
if (DynamicInputs.AllData.ContainsKey(year))
{
EstablishProbability = new Landis.Library.Parameters.SpeciesEcoregionAuxParm <double>(PlugIn.ModelCore.Species, PlugIn.ModelCore.Ecoregions);
//EstablishProbability = Util.CreateSpeciesEcoregionParm<double>(PlugIn.ModelCore.Species, PlugIn.ModelCore.Ecoregions);
EstablishModifier = new Landis.Library.Parameters.SpeciesEcoregionAuxParm <double>(PlugIn.ModelCore.Species, PlugIn.ModelCore.Ecoregions);
//EstablishModifier = Util.CreateSpeciesEcoregionParm<double>(PlugIn.ModelCore.Species, PlugIn.ModelCore.Ecoregions);
ANPP_MAX_Spp = new Landis.Library.Parameters.SpeciesEcoregionAuxParm <int>(PlugIn.ModelCore.Species, PlugIn.ModelCore.Ecoregions);
//ANPP_MAX_Spp = Util.CreateSpeciesEcoregionParm<int>(PlugIn.ModelCore.Species, PlugIn.ModelCore.Ecoregions);
B_MAX_Spp = new Landis.Library.Parameters.SpeciesEcoregionAuxParm <int>(PlugIn.ModelCore.Species, PlugIn.ModelCore.Ecoregions);
//B_MAX_Spp = Util.CreateSpeciesEcoregionParm<int>(PlugIn.ModelCore.Species, PlugIn.ModelCore.Ecoregions);
DynamicInputs.TimestepData = DynamicInputs.AllData[year];
foreach (ISpecies species in PlugIn.ModelCore.Species)
{
foreach (IEcoregion ecoregion in PlugIn.ModelCore.Ecoregions)
{
if (!ecoregion.Active)
{
continue;
}
if (DynamicInputs.TimestepData[species.Index, ecoregion.Index] == null)
{
continue;
}
EstablishProbability[species, ecoregion] = DynamicInputs.TimestepData[species.Index, ecoregion.Index].ProbEst;
EstablishModifier[species, ecoregion] = 1.0;
ANPP_MAX_Spp[species, ecoregion] = DynamicInputs.TimestepData[species.Index, ecoregion.Index].ANPP_MAX_Spp;
B_MAX_Spp[species, ecoregion] = DynamicInputs.TimestepData[species.Index, ecoregion.Index].B_MAX_Spp;
}
}
//if(PlugIn.CalibrateMode)
// DynamicInputs.Write();
EcoregionData.UpdateB_MAX();
}
}
