//---------------------------------------------------------------------
/// <summary>
/// Initializes the extension with a data file.
/// </summary>
public override void Initialize()
{
Timestep = parameters.Timestep;
Timestep = 1; //parameters.Timestep;
mapNameTemplate = parameters.MapNamesTemplate;
manyInsect = parameters.ManyInsect;
activeInsectIndex = 0;
MetadataHandler.InitializeMetadata(parameters.Timestep, parameters.MapNamesTemplate, parameters.LogFileName, manyInsect, ModelCore);
SiteVars.Initialize();
Defoliate.Initialize(parameters);
GrowthReduction.Initialize(parameters);
// ARJAN
//if (Landis.Extension.Succession.Biomass.PlugIn.SuccessionTimeStep != 1)
// PlugIn.ModelCore.UI.WriteLine(" CAUTION! If using Biomass Insects, Biomass Succession should be operating at an ANNUAL time step.");
foreach (IInsect insect in manyInsect)
{
if (insect == null)
{
PlugIn.ModelCore.UI.WriteLine(" Caution! Insect Parameters NOT loading correctly.");
}
insect.Neighbors = GetNeighborhood(insect.NeighborhoodDistance);
// PlugIn.ModelCore.UI.WriteLine(" Biomass Insects: Dispersal Neighborhood = {0} neighbors.", i);
insect.LastBioRemoved = 0;
}
}
//---------------------------------------------------------------------
/// <summary>
/// Initializes the extension with a data file.
/// </summary>
public override void Initialize()
{
Timestep = parameters.Timestep;
Timestep = 1; //parameters.Timestep;
mapNameTemplate = parameters.MapNamesTemplate;
manyInsect = parameters.ManyInsect;
SiteVars.Initialize();
Defoliate.Initialize(parameters);
GrowthReduction.Initialize(parameters);
if (Landis.Extension.Succession.Biomass.PlugIn.SuccessionTimeStep != 1)
{
PlugIn.ModelCore.UI.WriteLine(" CAUTION! If using Biomass Insects, Biomass Succession should be operating at an ANNUAL time step.");
}
foreach (IInsect insect in manyInsect)
{
if (insect == null)
{
PlugIn.ModelCore.UI.WriteLine(" Caution! Insect Parameters NOT loading correctly.");
}
insect.Neighbors = GetNeighborhood(insect.NeighborhoodDistance);
int i = 0;
foreach (RelativeLocation location in insect.Neighbors)
{
i++;
}
//if(insect.Neighbors != null)
// PlugIn.ModelCore.UI.WriteLine(" Biomass Insects: Dispersal Neighborhood = {0} neighbors.", i);
insect.LastBioRemoved = 0;
}
PlugIn.ModelCore.UI.WriteLine(" Opening BiomassInsect log file \"{0}\" ...", parameters.LogFileName);
try {
log = Landis.Data.CreateTextFile(parameters.LogFileName);
}
catch (Exception err) {
string mesg = string.Format("{0}", err.Message);
throw new System.ApplicationException(mesg);
}
log.AutoFlush = true;
log.Write("Time,InsectName,StartYear,StopYear,MeanDefoliation,NumSitesDefoliated0_33,NumSitesDefoliated33_66,NumSitesDefoliated66_100,NumOutbreakInitialSites,MortalityBiomassKg");
//foreach (IEcoregion ecoregion in Ecoregions.Dataset)
// log.Write(",{0}", ecoregion.MapCode);
log.WriteLine("");
}
//---------------------------------------------------------------------
public override void LoadParameters(string dataFile, ICore mCore)
{
modelCore = mCore;
SiteVars.Initialize();
InputParameterParser parser = new InputParameterParser();
parameters = Landis.Data.Load <IInputParameters>(dataFile, parser);
// Add local event handler for cohorts death due to age-only
// disturbances.
//Cohort.AgeOnlyDeathEvent += CohortKilledByAgeOnlyDisturbance;
}