public static string createAssay(string xmlText)
{
var assay = new Assay();
var serializer = new XmlSerializer(typeof(Assay));
using (var xmlReader = XmlReader.Create(new StringReader(xmlText)))
{
try
{
assay = (Assay)serializer.Deserialize(xmlReader);
assay.calculatedCrc = CrcValidator.CalculateCrcFor(xmlText);
ProcessAssay(assay, xmlText);
var javaScriptSerializer = new System.Web.Script.Serialization.JavaScriptSerializer();
string jsonString = javaScriptSerializer.Serialize(assay);
logger.Info("Parsed text successfully");
return(jsonString);
}
catch (Exception e)
{
logger.Warn("Unable to parse string");
return(null);
}
}
}
private static void SortAssay(Assay assay)
{
assay.dataReduction.resultCategories =
assay.dataReduction.resultCategories.OrderBy(
i => i.index).ToList();
assay.dataReduction.resultCategories.ForEach(i => {
i.resultEnum.interpretationList = i.resultEnum.interpretationList.OrderBy(
x => x.reductionIndex).ToList();
});
assay.reagentTypeDescription.reagents =
assay.reagentTypeDescription.reagents.OrderBy(v => v.isOnboard).ToList();
assay.reagentTypeDescription.reagents.Reverse();
}
private static Assay ProcessAssay(Assay assay, string xmlText)
{
string analytes = "";
foreach (Analyte analyte in assay.analyteList)
{
analytes += analyte.analyteName + ", ";
}
if (assay.calculatedCrc != assay.objectCrc)
{
assay.xmlText = xmlText;
}
assay.analytes = analytes.Trim(',', ' ');
assay.getType();
assay.processSteps = GetProcessSteps(xmlText);
SortAssay(assay);
return(assay);
}
