public FormForManualClustering(cGlobalInfo GlobalInfo)
{
InitializeComponent();
this.GlobalInfo = GlobalInfo;
WellClassSelectionPanel = new PanelForClassSelection(true, eClassType.WELL);
WellClassSelectionPanel.SelectAll();
WellClassSelectionPanel.Height = tabPageWellClasses.Height;
tabPageWellClasses.Controls.Add(WellClassSelectionPanel);
HitClassPanel = new PanelForClassSelection(false, eClassType.WELL);
HitClassPanel.Height = panelForHitClass.Height;
HitClassPanel.UnSelectAll();
HitClassPanel.Select(1);
panelForHitClass.Controls.Add(HitClassPanel);
NonHitClassPanel = new PanelForClassSelection( false, eClassType.WELL);
NonHitClassPanel.Height = panelForNonHitClass.Height;
NonHitClassPanel.UnSelectAll();
NonHitClassPanel.Select(0);
panelForNonHitClass.Controls.Add(NonHitClassPanel);
PlatesSelectionPanel = new PanelForPlatesSelection(true, null, true);
PlatesSelectionPanel.Height = tabPageWellClasses.Height;
PlatesSelectionPanel.Width = tabPageWellClasses.Width;
TabPagePlates.Controls.Add(PlatesSelectionPanel);
}
public cFeedBackMessage Run()
{
//if (GlobalInfo == null)
//{
// base.FeedBackMessage.IsSucceed = false;
// return base.FeedBackMessage;
//}
FormForDisplay WindowToDisplay = new FormForDisplay();
WindowToDisplay.Text = "Class Selection";
WindowToDisplay.FormBorderStyle = FormBorderStyle.FixedSingle;
PanelForClassSelection ClassSelectionPanel = new PanelForClassSelection(this.IsCheckBoxes, this.ClassType);
//ClassSelectionPanel.Height = WindowToDisplay.Height;
if ((IsSelectAll) && (this.IsCheckBoxes))
{
ClassSelectionPanel.SelectAll();
}
else
{
ClassSelectionPanel.UnSelectAll();
ClassSelectionPanel.Select(0);
ClassSelectionPanel.Select(1);
}
ClassSelectionPanel.Location = new System.Drawing.Point(10, 10);
ClassSelectionPanel.Width = 150;
ClassSelectionPanel.Height = ClassSelectionPanel.ListCheckBoxes.Count * 25;
ClassSelectionPanel.BorderStyle = BorderStyle.Fixed3D;
// MyPanel.Controls.Add(ClassSelectionPanel);
Button ReturnButton = new Button();
ReturnButton.Text = "Ok";
ReturnButton.DialogResult = DialogResult.OK;
ReturnButton.Location = new System.Drawing.Point(ClassSelectionPanel.Location.X, ClassSelectionPanel.Location.Y + ClassSelectionPanel.Height + 5);
WindowToDisplay.Controls.Add(ReturnButton);
WindowToDisplay.Controls.Add(ClassSelectionPanel);
WindowToDisplay.Width = ClassSelectionPanel.Width + 28;
WindowToDisplay.Height = ClassSelectionPanel.Height + ReturnButton.Height + 48;
if (WindowToDisplay.ShowDialog() != System.Windows.Forms.DialogResult.OK)
{
FeedBackMessage.IsSucceed = false;
FeedBackMessage.Message = "Selection aborded !";
return FeedBackMessage;
}
List<bool> ListBool = ClassSelectionPanel.GetListSelectedClass();
int NumSelected = 0;
this.ListSelectedClass = new cExtendedList();
foreach (var item in ListBool)
{
if (item)
{
this.ListSelectedClass.Add(1);
NumSelected++;
}
else
this.ListSelectedClass.Add(0);
}
if (NumSelected == 0)
{
FeedBackMessage.IsSucceed = false;
FeedBackMessage.Message = "No class selected !";
return FeedBackMessage;
}
return FeedBackMessage;
}
public cFeedBackMessage Run()
{
FormForDisplay WindowToDisplay = new FormForDisplay();
WindowToDisplay.Text = "Class Selection";
WindowToDisplay.FormBorderStyle = FormBorderStyle.FixedSingle;
PanelForClassSelection ClassSelectionPanel = new PanelForClassSelection( this.IsCheckBoxes, this.ClassType);
//ClassSelectionPanel.Height = WindowToDisplay.Height;
if (this.IsSelectAll && this.IsCheckBoxes)
{
ClassSelectionPanel.SelectAll();
}
else
{
ClassSelectionPanel.UnSelectAll();
ClassSelectionPanel.Select(0);
ClassSelectionPanel.Select(1);
}
ClassSelectionPanel.Location = new System.Drawing.Point(10, 10);
ClassSelectionPanel.Width = 150;
if(IsCheckBoxes)
ClassSelectionPanel.Height = ClassSelectionPanel.ListCheckBoxes.Count*25;
else
ClassSelectionPanel.Height = ClassSelectionPanel.ListRadioButtons.Count * 25;
ClassSelectionPanel.BorderStyle = BorderStyle.Fixed3D;
// MyPanel.Controls.Add(ClassSelectionPanel);
Button ReturnButton = new Button();
ReturnButton.Text = "Ok";
ReturnButton.DialogResult = DialogResult.OK;
ReturnButton.Location = new System.Drawing.Point(ClassSelectionPanel.Location.X, ClassSelectionPanel.Location.Y + ClassSelectionPanel.Height + 5);
WindowToDisplay.Controls.Add(ReturnButton);
WindowToDisplay.Controls.Add(ClassSelectionPanel);
WindowToDisplay.Width = ClassSelectionPanel.Width + 28;
WindowToDisplay.Height = ClassSelectionPanel.Height + ReturnButton.Height+ 48;
if (WindowToDisplay.ShowDialog() != System.Windows.Forms.DialogResult.OK)
{
FeedBackMessage.IsSucceed = false;
FeedBackMessage.Message = "Selection aborded !";
return FeedBackMessage;
}
List<bool> ListBool = ClassSelectionPanel.GetListSelectedClass();
int NumSelected = 0;
this.ListSelectedClass = new cExtendedTable();
this.ListSelectedClass.Name = "List Class Selected";
this.ListSelectedClass.Add(new cExtendedList());
this.ListSelectedClass[0].ListTags = new List<object>();
int Idx = 0;
foreach (var item in ListBool)
{
if (item)
{
this.ListSelectedClass[0].Add(1);
if(this.ClassType== eClassType.WELL)
this.ListSelectedClass[0].ListTags.Add(cGlobalInfo.ListWellClasses[Idx]);
else if(this.ClassType == eClassType.PHENOTYPE)
this.ListSelectedClass[0].ListTags.Add(cGlobalInfo.ListCellularPhenotypes[Idx]);
NumSelected++;
}
else
{
this.ListSelectedClass[0].Add(0);
this.ListSelectedClass[0].ListTags.Add(null);
}
Idx++;
}
if (NumSelected==0)
{
FeedBackMessage.IsSucceed = false;
FeedBackMessage.Message = "No class selected !";
return FeedBackMessage;
}
//if (NumSelected < MinNumberOfClass)
//{
// FeedBackMessage.IsSucceed = false;
// FeedBackMessage.Message = "At least "+MinNumberOfClass+" class have to be selected !";
// return FeedBackMessage;
//}
return FeedBackMessage;
}
private void swapClassesToolStripMenuItem_Click(object sender, EventArgs e)
{
if (cGlobalInfo.CurrentScreening == null) return;
FormForSwapClasses WindowSwapClasses = new FormForSwapClasses(GlobalInfo);
PanelForClassSelection ClassSelectionPanel = new PanelForClassSelection(true, eClassType.WELL);
ClassSelectionPanel.Height = WindowSwapClasses.panelToBeSwapped.Height;
//ClassSelectionPanel.Location.Y = ClassSelectionPanel.Location.Y+ 20;
ClassSelectionPanel.UnSelectAll();
WindowSwapClasses.panelToBeSwapped.Controls.Add(ClassSelectionPanel);
if (WindowSwapClasses.ShowDialog() != System.Windows.Forms.DialogResult.OK) return;
int Idx = 0;
int NumberOfPlates = cGlobalInfo.CurrentScreening.ListPlatesActive.Count;
// int OriginalIdx = WindowSwapClasses.comboBoxOriginalClass.SelectedIndex - 1;
int DestinatonIdx = WindowSwapClasses.comboBoxDestinationClass.SelectedIndex - 1;
// loop on all the plate
for (int PlateIdx = 0; PlateIdx < NumberOfPlates; PlateIdx++)
{
cPlate CurrentPlateToProcess = cGlobalInfo.CurrentScreening.ListPlatesActive.GetPlate(PlateIdx);
for (int IdxValue = 0; IdxValue < cGlobalInfo.CurrentScreening.Columns; IdxValue++)
for (int IdxValue0 = 0; IdxValue0 < cGlobalInfo.CurrentScreening.Rows; IdxValue0++)
{
cWell TmpWell = CurrentPlateToProcess.GetWell(IdxValue, IdxValue0, false);
if (TmpWell == null) continue;
if ((TmpWell.GetCurrentClassIdx() > -1) && (ClassSelectionPanel.GetListSelectedClass()[TmpWell.GetCurrentClassIdx()]))
{
if (DestinatonIdx == -1)
TmpWell.SetAsNoneSelected();
else
TmpWell.SetClass(DestinatonIdx);
Idx++;
}
}
}
cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate().DisplayDistribution(cGlobalInfo.CurrentScreening.ListDescriptors.GetActiveDescriptor(), false);
MessageBox.Show(Idx + " wells have been swapped !", "Process over !", MessageBoxButtons.OK, MessageBoxIcon.Exclamation);
}
private void SubPopulationStatDescItem(object sender, EventArgs e)
{
PanelForClassSelection ClassSelectionPanel = new PanelForClassSelection(true, eClassType.PHENOTYPE);
//ClassSelectionPanel.Height = WindowToDisplay.Height;
ClassSelectionPanel.UnSelectAll();
ClassSelectionPanel.Select(0);
ClassSelectionPanel.Select(1);
ClassSelectionPanel.Location = new System.Drawing.Point(10, 10);
ClassSelectionPanel.Width = 150;
ClassSelectionPanel.Height = ClassSelectionPanel.ListCheckBoxes.Count * 25;
ClassSelectionPanel.BorderStyle = BorderStyle.Fixed3D;
FormForStatDesc NewWindow = new FormForStatDesc(this.GlobalInfo);
NewWindow.panelForSubPopulation.Controls.Add(ClassSelectionPanel);
NewWindow.textBoxDescName.Text = cGlobalInfo.CurrentScreening.ListDescriptors[IntToTransfer].GetName() + "_Average";
if (NewWindow.ShowDialog() != System.Windows.Forms.DialogResult.OK) return;
if ((NewWindow.comboBoxStatistics.Text != "Average") && (NewWindow.comboBoxStatistics.Text != "Stdev") &&
(NewWindow.comboBoxStatistics.Text != "Sum") && (NewWindow.comboBoxStatistics.Text != "Median") && (NewWindow.comboBoxStatistics.Text != "MAD") && (NewWindow.comboBoxStatistics.Text != "CV%"))
return;
List<cCellularPhenotype> LCP = new List<cCellularPhenotype>();
for (int IdxPheno = 0; IdxPheno < ClassSelectionPanel.GetListSelectedClass().Count; IdxPheno++)
{
if (ClassSelectionPanel.GetListSelectedClass()[IdxPheno])
LCP.Add(cGlobalInfo.ListCellularPhenotypes[IdxPheno]);
}
if (LCP.Count == 0) return;
double RatioPopulation = 1;
string description = "This descriptor has been generated by computing the " + NewWindow.textBoxDescName.Text + " of " + RatioPopulation * 100 + "% the following phenotypic sub-populations:\n";
foreach (var item in LCP)
{
description += item.Name + "\n";
}
cDescriptorType NewAverageType = new cDescriptorType(NewWindow.textBoxDescName.Text, true, 1, description);
cGlobalInfo.CurrentScreening.ListDescriptors.AddNew(NewAverageType);
FormForProgress ProgressWindow = new FormForProgress();
ProgressWindow.Show();
int IdxProgress = 0;
int MaxProgress = 0;
foreach (cPlate CurrentPlateToProcess in cGlobalInfo.CurrentScreening.ListPlatesAvailable)
MaxProgress += (int)CurrentPlateToProcess.ListActiveWells.Count;
ProgressWindow.progressBar.Maximum = MaxProgress;
foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesAvailable)
{
foreach (cWell Tmpwell in TmpPlate.ListActiveWells)
{
TmpPlate.DBConnection = new cDBConnection(TmpPlate, Tmpwell.SQLTableName);
List<cDescriptorType> LDT = new List<cDescriptorType>();
LDT.Add(cGlobalInfo.CurrentScreening.ListDescriptors[IntToTransfer]);
cExtendedTable CT = TmpPlate.DBConnection.GetWellValues(Tmpwell, LDT, LCP, RatioPopulation);
cListSignature LDesc = new cListSignature();
double Value = 0;
if (CT.Count == 1)
{
if (CT[0].Count == 0)
{
Value = 0;
richTextBoxConsole.AppendText(TmpPlate.GetName() + " : " + Tmpwell.GetShortInfo().Remove(Tmpwell.GetShortInfo().Length - 2) + ": no objects fullfill your request. Statistics set to null.\n");
}
else
{
if (NewWindow.comboBoxStatistics.Text == "Average")
Value = CT[0].Average();
else if (NewWindow.comboBoxStatistics.Text == "Stdev")
Value = CT[0].Std();
else if (NewWindow.comboBoxStatistics.Text == "Sum")
Value = CT[0].Sum();
else if (NewWindow.comboBoxStatistics.Text == "Median")
Value = CT[0].Median();
else if (NewWindow.comboBoxStatistics.Text == "MAD")
Value = CT[0].MAD(true);
else if (NewWindow.comboBoxStatistics.Text == "CV%")
Value = CT[0].CV();
}
}
ProgressWindow.richTextBoxForComment.AppendText(Tmpwell.GetShortInfo() + ": " + CT[0].Count.ToString() + " / " + Tmpwell.GetNumBiologicalObjects() + "\n");
cSignature NewDesc = new cSignature(Value, NewAverageType, cGlobalInfo.CurrentScreening);
LDesc.Add(NewDesc);
Tmpwell.AddSignatures(LDesc);
TmpPlate.DBConnection.CloseConnection();
ProgressWindow.progressBar.Value = IdxProgress++;
ProgressWindow.richTextBoxForComment.AppendText(TmpPlate.GetName() + " : " + Tmpwell.GetShortInfo().Remove(Tmpwell.GetShortInfo().Length - 2) + "\n");
ProgressWindow.Refresh();
}
}
ProgressWindow.Close();
cGlobalInfo.CurrentScreening.ListDescriptors.UpDateDisplay();
cGlobalInfo.CurrentScreening.UpDatePlateListWithFullAvailablePlate();
for (int idxP = 0; idxP < cGlobalInfo.CurrentScreening.ListPlatesActive.Count; idxP++)
cGlobalInfo.CurrentScreening.ListPlatesActive[idxP].UpDataMinMax();
}
private void GeneratePCADescriptorItem(object sender, EventArgs e)
{
FormForProjections WindowClassification = new FormForProjections();
//WindowClassification.buttonClassification.Text = "Process";
WindowClassification.label1.Text = "Class of Interest";
WindowClassification.Text = "PCA";
WindowClassification.IsPCA = true;
WindowClassification.numericUpDownNumberOfAxis.Maximum = cGlobalInfo.CurrentScreening.GetNumberOfActiveDescriptor();
PanelForClassSelection ClassSelectionPanel = new PanelForClassSelection(true, eClassType.WELL);
ClassSelectionPanel.Height = WindowClassification.panelForClasses.Height;
ClassSelectionPanel.UnSelectAll();
ClassSelectionPanel.Select(2);
WindowClassification.panelForClasses.Controls.Add(ClassSelectionPanel);
cListPlates PlatesToProcess = new cListPlates(null);
if (WindowClassification.radioButtonFromCurrentPlate.Checked)
PlatesToProcess.Add(cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate());
else
PlatesToProcess = cGlobalInfo.CurrentScreening.ListPlatesActive;
WindowClassification.PlatesToProcess = PlatesToProcess;
if (WindowClassification.ShowDialog() != System.Windows.Forms.DialogResult.OK) return;
}
public cFeedBackMessage Run(cGlobalInfo GlobalInfo)
{
FormForDisplay WindowToDisplay = new FormForDisplay();
WindowToDisplay.Text = "2 Classes Selection";
WindowToDisplay.FormBorderStyle = FormBorderStyle.FixedSingle;
PanelForClassSelection ClassSelectionPanel1 = new PanelForClassSelection(PanelLeft_IsCheckBoxes, this.ClassType);
ClassSelectionPanel1.UnSelectAll();
ClassSelectionPanel1.Select(0);
ClassSelectionPanel1.Location = new System.Drawing.Point(10, 10);
ClassSelectionPanel1.Width = 140;
if(ClassSelectionPanel1.ListCheckBoxes!=null)
ClassSelectionPanel1.Height = ClassSelectionPanel1.ListCheckBoxes.Count*25;
else
ClassSelectionPanel1.Height = ClassSelectionPanel1.ListRadioButtons.Count * 25;
ClassSelectionPanel1.BorderStyle = BorderStyle.Fixed3D;
PanelForClassSelection ClassSelectionPanel2 = new PanelForClassSelection( PanelRight_IsCheckBoxes, this.ClassType);
ClassSelectionPanel2.UnSelectAll();
ClassSelectionPanel2.Select(1);
ClassSelectionPanel2.Location = new System.Drawing.Point(10 + ClassSelectionPanel1.Width, 10);
ClassSelectionPanel2.Width = 140;
if (ClassSelectionPanel2.ListCheckBoxes != null)
ClassSelectionPanel2.Height = ClassSelectionPanel2.ListCheckBoxes.Count * 25;
else
ClassSelectionPanel2.Height = ClassSelectionPanel2.ListRadioButtons.Count * 25;
ClassSelectionPanel2.BorderStyle = BorderStyle.Fixed3D;
Button ReturnButton = new Button();
ReturnButton.Text = "Ok";
ReturnButton.DialogResult = DialogResult.OK;
ReturnButton.Location = new System.Drawing.Point(ClassSelectionPanel1.Location.X, ClassSelectionPanel1.Location.Y + ClassSelectionPanel1.Height + 5);
WindowToDisplay.Controls.Add(ReturnButton);
WindowToDisplay.Controls.Add(ClassSelectionPanel1);
WindowToDisplay.Controls.Add(ClassSelectionPanel2);
WindowToDisplay.Width = ClassSelectionPanel1.Width + ClassSelectionPanel2.Width + 28;
WindowToDisplay.Height = ClassSelectionPanel1.Height + ReturnButton.Height+ 48;
if (WindowToDisplay.ShowDialog() != System.Windows.Forms.DialogResult.OK)
{
FeedBackMessage.IsSucceed = false;
FeedBackMessage.Message = "Selection aborded !";
return FeedBackMessage;
}
List<bool> ListBool1 = ClassSelectionPanel1.GetListSelectedClass();
List<bool> ListBool2 = ClassSelectionPanel2.GetListSelectedClass();
int NumSelected = 0;
this.ListSelectedClass = new cExtendedTable();
foreach (var item in ListBool1)
{
this.ListSelectedClass.Add(new cExtendedList());
if (item)
{
this.ListSelectedClass[0].Add(1);
NumSelected++;
}
else
this.ListSelectedClass[0].Add(0);
}
foreach (var item in ListBool2)
{
this.ListSelectedClass.Add(new cExtendedList());
if (item)
{
this.ListSelectedClass[1].Add(1);
NumSelected++;
}
else
this.ListSelectedClass[1].Add(0);
}
return FeedBackMessage;
}
