private void statisticsToolStripMenuItem1_Click_1(object sender, EventArgs e) { string NameFunction = ""; if (_StatCVItem.Checked) NameFunction = "Coeff. of Variation"; else if (_StatMeanItem.Checked) NameFunction = "Mean"; else if (_StatSumItem.Checked) NameFunction = "Sum"; else if (_StatJarqueBeraItem.Checked) NameFunction = "Jarque-Bera"; cGUI_ListClasses GUI_ListClasses = new cGUI_ListClasses(); GUI_ListClasses.IsCheckBoxes = true; GUI_ListClasses.IsSelectAll = true; if (GUI_ListClasses.Run().IsSucceed == false) return; cExtendedTable ListClassSelected = new cExtendedTable(GUI_ListClasses.GetOutPut());// GetOutPut(); int IdxClass = -1; for (int IdxC = 0; IdxC < ListClassSelected[0].Count; IdxC++) { if (ListClassSelected[0][IdxC] == 1) IdxClass = IdxC; } #region single plate and plate by plate cDesignerTab DT = new cDesignerTab(); if ((ProcessModeCurrentPlateOnlyToolStripMenuItem.Checked) || (ProcessModeplateByPlateToolStripMenuItem.Checked)/*||(ProcessModeEntireScreeningToolStripMenuItem.Checked)*/) { List<cPlate> ListPlatesToProcess = new List<cPlate>(); if ((ProcessModeplateByPlateToolStripMenuItem.Checked)/*||(ProcessModeEntireScreeningToolStripMenuItem.Checked)*/) { foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive) ListPlatesToProcess.Add(TmpPlate); } else ListPlatesToProcess.Add(cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate()); foreach (cPlate TmpPlate in ListPlatesToProcess) { cListWells ListWellsToProcess1 = new cListWells(null); foreach (cWell item in TmpPlate.ListActiveWells) { if (item.GetCurrentClassIdx() != -1) { if (ListClassSelected[0][item.GetCurrentClassIdx()] == 1) ListWellsToProcess1.Add(item); } } cExtendedTable NewTable1 = new cExtendedTable(ListWellsToProcess1, true); if ((NewTable1.Count == 0) || (NewTable1[0].Count < 3)) { if (ProcessModeCurrentPlateOnlyToolStripMenuItem.Checked) { MessageBox.Show("Insufficient number of control wells", "Error", MessageBoxButtons.OK, MessageBoxIcon.Error); return; } else continue; } cExtendedList ListValues = new cExtendedList(); List<cDescriptorType> ListDescs = new List<cDescriptorType>(); List<string> ListNames = new List<string>(); int RealIdx = 0; for (int IDxDesc = 0; IDxDesc < cGlobalInfo.CurrentScreening.ListDescriptors.Count; IDxDesc++) { if (!cGlobalInfo.CurrentScreening.ListDescriptors[IDxDesc].IsActive()) continue; cExtendedTable TableForValues = new cExtendedTable(); TableForValues.Add(NewTable1[RealIdx]); RealIdx++; if (_StatJarqueBeraItem.Checked) { cNormalityJarqueBera JB = new cNormalityJarqueBera(); JB.SetInputData(TableForValues); JB.Run(); ListValues.Add(JB.GetOutPut()[0][0]); } else { cStatistics CS = new cStatistics(); CS.UnselectAll(); if (_StatCVItem.Checked) CS.IsCV = true; else if (_StatMeanItem.Checked) CS.IsMean = true; else if (_StatSumItem.Checked) CS.IsSum = true; CS.SetInputData(TableForValues); CS.Run(); ListValues.Add(CS.GetOutPut()[0][0]); } ListDescs.Add(cGlobalInfo.CurrentScreening.ListDescriptors[IDxDesc]); } cExtendedTable ET = new cExtendedTable(new cExtendedTable(ListValues)); ET[0].ListTags = new List<object>(); ET[0].ListTags.AddRange(ListDescs); ET.Name = TmpPlate.GetName() + "\n" + NameFunction + " - " + cGlobalInfo.ListWellClasses[IdxClass].Name + " (" + NewTable1[0].Count + " wells)"; ET[0].Name = ET.Name; cSort S = new cSort(); S.SetInputData(ET); S.ColumnIndexForSorting = 0; S.Run(); //ZFactorList.Sort(delegate(cSimpleSignature p1, cSimpleSignature p2) { return p1.AverageValue.CompareTo(p2.AverageValue); }); cViewerGraph1D VG1 = new cViewerGraph1D(); VG1.SetInputData(S.GetOutPut()); VG1.Chart.LabelAxisY = NameFunction; VG1.Chart.LabelAxisX = "Descriptor"; VG1.Chart.IsZoomableX = true; VG1.Chart.IsBar = true; VG1.Chart.IsBorder = true; VG1.Chart.IsDisplayValues = true; VG1.Chart.IsShadow = true; VG1.Chart.MarkerSize = 4; VG1.Title = TmpPlate.GetName(); VG1.Run(); DT.SetInputData(VG1.GetOutPut()); } DT.Run(); cDisplayToWindow CDW = new cDisplayToWindow(); CDW.SetInputData(DT.GetOutPut());//VG1.GetOutPut()); if (ProcessModeCurrentPlateOnlyToolStripMenuItem.Checked) CDW.Title = NameFunction + " - " + ListPlatesToProcess[0].GetName(); else CDW.Title = NameFunction + " - " + ListPlatesToProcess.Count + " plates"; CDW.Run(); CDW.Display(); } #endregion #region entire screening else if (ProcessModeEntireScreeningToolStripMenuItem.Checked) { List<cPlate> ListPlatesToProcess = new List<cPlate>(); foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive) ListPlatesToProcess.Add(TmpPlate); cExtendedList ListZ = new cExtendedList(); List<cPlate> ListPlatesForZFactor = new List<cPlate>(); foreach (cPlate TmpPlate in ListPlatesToProcess) { cListWells ListWellsToProcess1 = new cListWells(null); foreach (cWell item in TmpPlate.ListActiveWells) { if (item.GetCurrentClassIdx() != -1) { if (ListClassSelected[0][item.GetCurrentClassIdx()] == 1) ListWellsToProcess1.Add(item); } } cExtendedTable NewTable1 = new cExtendedTable(ListWellsToProcess1, cGlobalInfo.CurrentScreening.ListDescriptors.GetDescriptorIndex(cGlobalInfo.CurrentScreening.ListDescriptors.GetActiveDescriptor())); if ((NewTable1.Count == 0) || (NewTable1[0].Count < 3)) { if (ProcessModeCurrentPlateOnlyToolStripMenuItem.Checked) { MessageBox.Show("Insufficient number of control wells", "Error", MessageBoxButtons.OK, MessageBoxIcon.Error); return; } else continue; } if (_StatJarqueBeraItem.Checked) { cNormalityJarqueBera JB = new cNormalityJarqueBera(); JB.SetInputData(NewTable1); JB.Run(); ListZ.Add(JB.GetOutPut()[0][0]); } else { cStatistics CS = new cStatistics(); CS.UnselectAll(); if (_StatCVItem.Checked) CS.IsCV = true; else if (_StatMeanItem.Checked) CS.IsMean = true; else if (_StatSumItem.Checked) CS.IsSum = true; CS.SetInputData(NewTable1); CS.Run(); ListZ.Add(CS.GetOutPut()[0][0]); } ListPlatesForZFactor.Add(TmpPlate); } #endregion cExtendedTable ET = new cExtendedTable(new cExtendedTable(ListZ)); ET[0].ListTags = new List<object>(); ET[0].ListTags.AddRange(ListPlatesForZFactor); ET.Name = NameFunction + " - " + cGlobalInfo.CurrentScreening.ListDescriptors[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetName();// +" - " +cGlobalInfo.ListWellClasses[IdxClassNeg].Name + " (" + NewTable1[0].Count + " wells) vs. " +cGlobalInfo.ListWellClasses[IdxClassPos].Name + " (" + NewTable2[0].Count + " wells)"; ET[0].Name = ET.Name; cViewerGraph1D VG1 = new cViewerGraph1D(); VG1.SetInputData(ET); VG1.Chart.LabelAxisY = NameFunction; VG1.Chart.LabelAxisX = "Plate"; VG1.Chart.IsZoomableX = true; VG1.Chart.IsBar = true; VG1.Chart.IsBorder = true; VG1.Chart.IsDisplayValues = true; VG1.Chart.IsShadow = true; VG1.Chart.MarkerSize = 4; VG1.Title = cGlobalInfo.CurrentScreening.ListDescriptors[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetName(); VG1.Run(); cDisplayToWindow CDW = new cDisplayToWindow(); CDW.SetInputData(VG1.GetOutPut()); CDW.Title = NameFunction + " - " + ListPlatesToProcess.Count + " plates"; CDW.Run(); CDW.Display(); } }
private void PerformTestType(eTestType TestType) { #region extract classes of interest cGUI_ListClasses GUI_ListClasses = new cGUI_ListClasses(); GUI_ListClasses.IsCheckBoxes = !_DescEvolCellByCellItem.Checked; GUI_ListClasses.IsSelectAll = true; if (GUI_ListClasses.Run().IsSucceed == false) return; cExtendedTable ListClassSelected = GUI_ListClasses.GetOutPut(); if (ListClassSelected.Sum() < 1) { MessageBox.Show("At least one classe has to be selected.", "Error !", MessageBoxButtons.OK, MessageBoxIcon.Error); return; } #endregion cDesignerTab DT = new cDesignerTab(); for (int i = 0; i < cGlobalInfo.CurrentScreening.ListDescriptors.Count; i++) { if (cGlobalInfo.CurrentScreening.ListDescriptors[i].IsActive() == false) continue; cDesignerSplitter DS = new cDesignerSplitter(); DS.Orientation = Orientation.Vertical; cViewerTable VTable = new cViewerTable(); cViewertext VT = new cViewertext(); cExtendedTable FinalTable = new cExtendedTable(cGlobalInfo.ListWellClasses.Count, 0, 0); for (int j = 0; j < cGlobalInfo.ListWellClasses.Count; j++) { FinalTable[j].Tag = cGlobalInfo.ListWellClasses[j]; FinalTable[j].Name = cGlobalInfo.ListWellClasses[j].Name; } cListWells ListWellsToProcess = new cListWells(null); cDescriptorType CurrentDesc = cGlobalInfo.CurrentScreening.ListDescriptors[i]; // build the table foreach (cPlate CurrentPlate in cGlobalInfo.CurrentScreening.ListPlatesActive) { foreach (cWell CurrentWell in CurrentPlate.ListActiveWells) { if ((CurrentWell.GetCurrentClassIdx() < 0) || (ListClassSelected[0][CurrentWell.GetCurrentClassIdx()] == 0)) continue; { FinalTable[CurrentWell.GetCurrentClassIdx()].Add(CurrentWell.GetAverageValue(CurrentDesc)); ListWellsToProcess.Add(CurrentWell); } } } cClean C = new cClean(); C.SetInputData(FinalTable); C.Run(); cExtendedTable NewTable = C.GetOutPut(); cTwoSampleFTest TSFTest = null; cANOVA Anova = null; cTwoSampleUnpooledTTest TwoSampleTTest = null; cStudent_tTest StudentTTest = null; if (TestType == eTestType.F_TEST) { TSFTest = new cTwoSampleFTest(); TSFTest.SetInputData(NewTable); TSFTest.Run(); VTable.SetInputData(TSFTest.GetOutPut()); VT.SetInputData(TSFTest.GetInfo()); } else if (TestType == eTestType.ANOVA) { Anova = new cANOVA(); Anova.SetInputData(NewTable); Anova.Run(); VTable.SetInputData(Anova.GetOutPut()); VT.SetInputData(Anova.GetInfo()); } else if (TestType == eTestType.TWO_SAMPLES_T_TEST) { TwoSampleTTest = new cTwoSampleUnpooledTTest(); TwoSampleTTest.SetInputData(NewTable); TwoSampleTTest.Run(); VTable.SetInputData(TwoSampleTTest.GetOutPut()); VT.SetInputData(TwoSampleTTest.GetInfo()); } else if (TestType == eTestType.STUDENT_T_TEST) { StudentTTest = new cStudent_tTest(); StudentTTest.SetInputData(NewTable); StudentTTest.Run(); VTable.SetInputData(StudentTTest.GetOutPut()); VT.SetInputData(StudentTTest.GetInfo()); } VTable.DigitNumber = -1; VTable.Run(); DS.SetInputData(VTable.GetOutPut()); VT.Run(); DS.SetInputData(VT.GetOutPut()); DS.Run(); DS.Title = cGlobalInfo.CurrentScreening.ListDescriptors[i].GetName(); cDesignerSplitter DSMain = new cDesignerSplitter(); DSMain.Orientation = Orientation.Horizontal; DSMain.SetInputData(DS.GetOutPut()); // Compute and display associated Stacked histogram //CDW1.Title = CompleteScreening.ListDescriptors[CompleteScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetName() + " - Stacked Histogram - " + PlateList.Count + " plates"; cExtendedTable TableForHisto = ListWellsToProcess.GetAverageDescriptorValues(i); TableForHisto.Name = ""; cViewerStackedHistogram CV1 = new cViewerStackedHistogram(); CV1.SetInputData(TableForHisto); CV1.Chart.LabelAxisX = cGlobalInfo.CurrentScreening.ListDescriptors[i].GetName(); CV1.Chart.IsLegend = true; CV1.Run(); DSMain.SetInputData(CV1.GetOutPut()); DSMain.Title = cGlobalInfo.CurrentScreening.ListDescriptors[i].GetName(); DSMain.Run(); DT.SetInputData(DSMain.GetOutPut()); } DT.Run(); cDisplayToWindow DTW = new cDisplayToWindow(); DTW.SetInputData(DT.GetOutPut()); DTW.Title = "Classification Significance - " + TestType.ToString(); DTW.Run(); DTW.Display(); }
private void lDAToolStripMenuItem_Click(object sender, EventArgs e) { cGUI_ListClasses GUI_ListClasses = new cGUI_ListClasses(); if (GUI_ListClasses.Run().IsSucceed == false) return; cExtendedList ListClassSelected = GUI_ListClasses.GetOutPut()[0]; if (ListClassSelected.Sum() < 2) { MessageBox.Show("At least two classes have to be selected to perfom a LDA.", "Error !", MessageBoxButtons.OK, MessageBoxIcon.Error); return; } cDisplayToWindow vD = new cDisplayToWindow(); if (ProcessModeCurrentPlateOnlyToolStripMenuItem.Checked) { cPlate TmpPlate = cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate(); cListWells ListWellsToProcess = new cListWells(null); cExtendedList ListClasses = new cExtendedList(); ListClasses.Name = "Classes"; foreach (cWell item in TmpPlate.ListActiveWells) if ((item.GetCurrentClassIdx() != -1) && (ListClassSelected[item.GetCurrentClassIdx()] == 1)) { ListWellsToProcess.Add(item); ListClasses.Add(item.GetCurrentClassIdx()); } cExtendedTable NewTable = new cExtendedTable(ListWellsToProcess, true); NewTable.Add(ListClasses); cProjectorLDA LDA = new cProjectorLDA(); LDA.SetInputData(NewTable); cFeedBackMessage FM = LDA.Run(); if (!FM.IsSucceed) { MessageBox.Show(FM.Message, "Error !", MessageBoxButtons.OK, MessageBoxIcon.Error); return; } cViewerTable VHM = new cViewerTable(); cExtendedTable CT = LDA.GetOutPut(); foreach (var item in CT) { cDescriptorsLinearCombination DLC = new cDescriptorsLinearCombination(item); foreach (cDescriptorType Desc in item.ListTags) DLC.Add(Desc); item.Tag = DLC; } VHM.SetInputData(CT); VHM.Run(); vD.SetInputData(VHM.GetOutPut()); vD.Title = "LDA - " + TmpPlate.GetName() + " : " + ListWellsToProcess.Count + " wells"; } else if (ProcessModeEntireScreeningToolStripMenuItem.Checked) { cListWells ListWellsToProcess = new cListWells(null); cExtendedList ListClasses = new cExtendedList(); ListClasses.Name = "Classes"; foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive) { foreach (cWell item in TmpPlate.ListActiveWells) { if (item.GetCurrentClassIdx() != -1) { if (ListClassSelected[item.GetCurrentClassIdx()] == 1) { ListWellsToProcess.Add(item); ListClasses.Add(item.GetCurrentClassIdx()); } } } } cExtendedTable NewTable = new cExtendedTable(ListWellsToProcess, true); NewTable.Add(ListClasses); cProjectorLDA LDA = new cProjectorLDA(); LDA.SetInputData(NewTable); cFeedBackMessage FM = LDA.Run(); if (!FM.IsSucceed) { MessageBox.Show(FM.Message, "Error !", MessageBoxButtons.OK, MessageBoxIcon.Error); return; } cExtendedTable CT = LDA.GetOutPut(); foreach (var item in CT) { cDescriptorsLinearCombination DLC = new cDescriptorsLinearCombination(item); foreach (cDescriptorType Desc in item.ListTags) DLC.Add(Desc); item.Tag = DLC; } cViewerTable VHM = new cViewerTable(); VHM.SetInputData(CT); VHM.Run(); vD.SetInputData(VHM.GetOutPut()); vD.Title = "LDA - " + ListWellsToProcess.Count + " wells."; } else if (ProcessModeplateByPlateToolStripMenuItem.Checked) { cDesignerTab CDT = new cDesignerTab(); foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive) { cListWells ListWellsToProcess = new cListWells(null); cExtendedList ListClasses = new cExtendedList(); ListClasses.Name = "Classes"; foreach (cWell item in TmpPlate.ListActiveWells) { if (item.GetCurrentClassIdx() != -1) { if (ListClassSelected[item.GetCurrentClassIdx()] == 1) { ListWellsToProcess.Add(item); ListClasses.Add(item.GetCurrentClassIdx()); } } } cExtendedTable NewTable = new cExtendedTable(ListWellsToProcess, true); NewTable.Add(ListClasses); NewTable.Name = TmpPlate.GetName(); cProjectorLDA LDA = new cProjectorLDA(); LDA.SetInputData(NewTable); cFeedBackMessage FM = LDA.Run(); if (!FM.IsSucceed) { MessageBox.Show(FM.Message, "Error !", MessageBoxButtons.OK, MessageBoxIcon.Error); return; } cExtendedTable CT = LDA.GetOutPut(); foreach (var item in CT) { cDescriptorsLinearCombination DLC = new cDescriptorsLinearCombination(item); foreach (cDescriptorType Desc in item.ListTags) DLC.Add(Desc); item.Tag = DLC; } cViewerTable VHM = new cViewerTable(); VHM.SetInputData(CT); VHM.Run(); CDT.SetInputData(VHM.GetOutPut()); } CDT.Run(); vD.SetInputData(CDT.GetOutPut()); } else return; vD.Run(); vD.Display(); }
private void testMultiScatterToolStripMenuItem_Click(object sender, EventArgs e) { //V1D.Chart.LabelAxisX = "Well Index"; //V1D.Chart.LabelAxisY = CompleteScreening.ListDescriptors[CompleteScreening.ListDescriptors.CurrentSelectedDescriptor].GetName(); //V1D.Chart.BackgroundColor = Color.LightYellow; //V1D.Chart.IsXAxis = true; cGUI_ListClasses GUI_ListClasses = new cGUI_ListClasses(); GUI_ListClasses.IsCheckBoxes = true; GUI_ListClasses.IsSelectAll = true; if (GUI_ListClasses.Run().IsSucceed == false) return; cExtendedList ListClassSelected = GUI_ListClasses.GetOutPut()[0]; if (ListClassSelected.Sum() < 1) { MessageBox.Show("At least one classe has to be selected.", "Error !", MessageBoxButtons.OK, MessageBoxIcon.Error); return; } cDesignerSplitter CDC = new cDesignerSplitter(); cListWells ListWellsToProcess = new cListWells(null); //foreach (cPlate TmpPlate in CompleteScreening.ListPlatesActive) foreach (cWell item in cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate().ListActiveWells) if (item.GetCurrentClassIdx() != -1) if (ListClassSelected[item.GetCurrentClassIdx()] == 1) ListWellsToProcess.Add(item); cExtendedTable DataFromPlate = new cExtendedTable(ListWellsToProcess, true); DataFromPlate.Name = cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate().GetName(); //if (ProcessModeCurrentPlateOnlyToolStripMenuItem.Checked) { for (int IdxDesc0 = 0; IdxDesc0 < DataFromPlate.Count; IdxDesc0++) for (int IdxDesc1 = 1; IdxDesc1 < DataFromPlate.Count; IdxDesc1++) { cViewer2DScatterPoint V1D = new cViewer2DScatterPoint(); V1D.Chart.CurrentTitle.Tag = cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate(); V1D.Chart.IdxDesc0 = IdxDesc0; V1D.Chart.IdxDesc1 = IdxDesc1; V1D.SetInputData(DataFromPlate); V1D.Run(); V1D.Chart.Width = 0; V1D.Chart.Height = 0; cDesignerSinglePanel Designer0 = new cDesignerSinglePanel(); Designer0.SetInputData(V1D.GetOutPut()); Designer0.Run(); CDC.SetInputData(Designer0.GetOutPut()); } } CDC.Run(); cDisplayToWindow Disp0 = new cDisplayToWindow(); Disp0.SetInputData(CDC.GetOutPut()); Disp0.Title = "2D Scatter points graph - wells."; if (!Disp0.Run().IsSucceed) return; Disp0.Display(); }
public void ExportToHTML(cDescriptorType Desc) { if (Desc.IsConnectedToDatabase == false) return; List<cDescriptorType> LCDT = new List<cDescriptorType>(); LCDT.Add(Desc); List<cCellularPhenotype> ListCellularPhenotypesToBeSelected = new List<cCellularPhenotype>(); cGUI_ListClasses GUIClasses = new cGUI_ListClasses(); GUIClasses.IsCheckBoxes = true; GUIClasses.IsSelectAll = true; GUIClasses.ClassType = eClassType.PHENOTYPE; if (!GUIClasses.Run().IsSucceed) return; int IDx = 0; foreach (var item in cGlobalInfo.ListCellularPhenotypes) { if ((GUIClasses.GetOutPut()[0][IDx++] != 0)) ListCellularPhenotypesToBeSelected.Add(item); } cExtendedTable ET = new cExtendedTable(cGlobalInfo.CurrentScreening.Columns, cGlobalInfo.CurrentScreening.Rows, 0); ET.Name = this.Name + " [" + Desc.GetName() + "]"; ET.ListRowNames = new List<string>(); for (int i = 0; i < ET[0].Count; i++) { ET.ListRowNames.Add(((char)(i + 65)).ToString()); } FormForProgress MyProgressBar = new FormForProgress(); MyProgressBar.progressBar.Maximum = this.ListActiveWells.Count; MyProgressBar.Show(); //ET.ListTags = new List<object>(); for (int i = 0; i < cGlobalInfo.CurrentScreening.Columns; i++) { ET[i].ListTags = new List<object>(); ET[i].Name = (i + 1).ToString(); for (int j = 0; j < cGlobalInfo.CurrentScreening.Rows; j++) { MyProgressBar.progressBar.Update(); cWell TmpWell = this.GetWell(i, j, true); if (TmpWell == null) { ET[i].ListTags.Add("n.a."); continue; } MyProgressBar.progressBar.Value++; cExtendedTable TmpET = null; if (cGlobalInfo.OptionsWindow.FFAllOptions.checkBoxHTMLExportStackedHisto.Checked) TmpET = TmpWell.GetValuesList(LCDT, ListCellularPhenotypesToBeSelected, true); else TmpET = TmpWell.GetValuesList(LCDT, ListCellularPhenotypesToBeSelected, false); TmpET.Name = "[" + TmpWell.GetPos() + "] - " + TmpET[0].Count + " Objects"; // get the values associated to this well and descriptor if (cGlobalInfo.OptionsWindow.FFAllOptions.checkBoxHTMLExportStackedHisto.Checked) { cExtendedTable FinalTable = new cExtendedTable(); FinalTable.Name = "Stacked Histogram - " + this.GetName(); int Idx = 0; foreach (var item in cGlobalInfo.ListCellularPhenotypes) { FinalTable.Add(new cExtendedList()); FinalTable[Idx].Name = item.Name; FinalTable[Idx].Tag = item; for (int k = 0; k < TmpET[1].Count; k++) { if (TmpET[1][k] == Idx) FinalTable[Idx].Add(TmpET[0][k]); } Idx++; } cViewerStackedHistogram VSH = new cViewerStackedHistogram(); VSH.SetInputData(FinalTable);//TmpET); VSH.Chart.LabelAxisX = Desc.GetName(); VSH.Chart.IsLine = false; VSH.Chart.CurrentTitle.Text = TmpET.Name; if ((cGlobalInfo.OptionsWindow.radioButtonHistoDisplayManualMinMax.Checked) || (cGlobalInfo.OptionsWindow.radioButtonHistoDisplayAutomatedMinMax.Checked)) { VSH.Chart.DefaultAxisXMin = new cExtendedList(); VSH.Chart.DefaultAxisXMin.Add((double)cGlobalInfo.OptionsWindow.numericUpDownManualMin.Value); VSH.Chart.DefaultAxisXMax = new cExtendedList(); VSH.Chart.DefaultAxisXMax.Add((double)cGlobalInfo.OptionsWindow.numericUpDownManualMax.Value); if (cGlobalInfo.OptionsWindow.FFAllOptions.checkBoxHTMLExportBackColorClass.Checked) VSH.Chart.BackgroundColor = TmpWell.GetClassColor(); } VSH.Chart.BinNumber = Desc.GetBinNumber(); VSH.Chart.IsShadow = false; VSH.Chart.IsBorder = false; VSH.Run(); ET[i].ListTags.Add((Chart)VSH.Chart); } else { cViewerHistogram VH = new cViewerHistogram(); VH.SetInputData(TmpET); VH.Chart.LabelAxisX = Desc.GetName(); VH.Chart.CurrentTitle.Text = TmpET.Name; if ((cGlobalInfo.OptionsWindow.radioButtonHistoDisplayManualMinMax.Checked) || (cGlobalInfo.OptionsWindow.radioButtonHistoDisplayAutomatedMinMax.Checked)) { VH.Chart.DefaultAxisXMin = new cExtendedList(); VH.Chart.DefaultAxisXMin.Add((double)cGlobalInfo.OptionsWindow.numericUpDownManualMin.Value); VH.Chart.DefaultAxisXMax = new cExtendedList(); VH.Chart.DefaultAxisXMax.Add((double)cGlobalInfo.OptionsWindow.numericUpDownManualMax.Value); if (cGlobalInfo.OptionsWindow.FFAllOptions.checkBoxHTMLExportBackColorClass.Checked) VH.Chart.BackgroundColor = TmpWell.GetClassColor(); } VH.Run(); ET[i].ListTags.Add((Chart)VH.Chart); } } } MyProgressBar.Close(); cTableToHTML TToHTML = new cTableToHTML(); TToHTML.IsDisplayUIForFilePath = true; TToHTML.SetInputData(ET); TToHTML.Run(); }
private void covarianceMatrixToolStripMenuItem_Click(object sender, EventArgs e) { if (checkedListBoxActiveDescriptors.CheckedItems.Count <= 1) { MessageBox.Show("At least two descriptors have to be selected", "Error", MessageBoxButtons.OK, MessageBoxIcon.Error); return; } cGUI_ListClasses GUI_ListClasses = new cGUI_ListClasses(); GUI_ListClasses.IsCheckBoxes = true; GUI_ListClasses.IsSelectAll = true; if (GUI_ListClasses.Run().IsSucceed == false) return; cExtendedList ListClassSelected = GUI_ListClasses.GetOutPut()[0]; if (ListClassSelected.Sum() < 1) { MessageBox.Show("At least one classe has to be selected.", "Error !", MessageBoxButtons.OK, MessageBoxIcon.Error); return; } cDisplayToWindow vD = new cDisplayToWindow(); cDesignerTab DT = new cDesignerTab(); cCovarianceMatrix CM = new cCovarianceMatrix(); // CM.FTestTails = eFTestTails.BOTH; if (this.ProcessModeplateByPlateToolStripMenuItem.Checked) { foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive) { cListWells ListWellsToProcess = new cListWells(null); foreach (cWell item in TmpPlate.ListActiveWells) if ((item.GetCurrentClassIdx() != -1) && (ListClassSelected[item.GetCurrentClassIdx()] == 1)) ListWellsToProcess.Add(item); cExtendedTable NewTable = new cExtendedTable(ListWellsToProcess, true); CM.SetInputData(NewTable); CM.Run(); //cViewerHeatMap VHM = new cViewerHeatMap(); cViewerTable VHM = new cViewerTable(); VHM.SetInputData(CM.GetOutPut()); //VHM.IsDisplayValues = true; vD.Title = "Covariance - " + TmpPlate.GetName() + " (" + ListWellsToProcess.Count + " wells)"; VHM.Run(); DT.SetInputData(VHM.GetOutPut()); } } else if (this.ProcessModeEntireScreeningToolStripMenuItem.Checked) { cListWells ListWellsToProcess = new cListWells(null); foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive) { foreach (cWell item in TmpPlate.ListActiveWells) if ((item.GetCurrentClassIdx() != -1) && (ListClassSelected[item.GetCurrentClassIdx()] == 1)) ListWellsToProcess.Add(item); } cExtendedTable NewTable = new cExtendedTable(ListWellsToProcess, true); // cTwoSampleFTest CM = new cTwoSampleFTest(); CM.SetInputData(NewTable); CM.Run(); // cViewerHeatMap VHM = new cViewerHeatMap(); cViewerTable VHM = new cViewerTable(); VHM.SetInputData(CM.GetOutPut()); //VHM.IsDisplayValues = true; vD.Title = "Covariance - Entire screening (" + ListWellsToProcess.Count + " wells)"; VHM.Run(); DT.SetInputData(VHM.GetOutPut()); } else { cListWells ListWellsToProcess = new cListWells(null); foreach (cWell item in cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate().ListActiveWells) if ((item.GetCurrentClassIdx() != -1) && (ListClassSelected[item.GetCurrentClassIdx()] == 1)) ListWellsToProcess.Add(item); cExtendedTable NewTable = new cExtendedTable(ListWellsToProcess, true); // cTwoSampleFTest CM = new cTwoSampleFTest(); CM.SetInputData(NewTable); CM.Run(); //cViewerHeatMap VHM = new cViewerHeatMap(); cViewerTable VHM = new cViewerTable(); VHM.SetInputData(CM.GetOutPut()); //VHM.IsDisplayValues = true; vD.Title = "Covariance - " + cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate().GetName() + " (" + ListWellsToProcess.Count + " wells)"; VHM.Run(); DT.SetInputData(VHM.GetOutPut()); } DT.Run(); vD.SetInputData(DT.GetOutPut()); // vD.Title = "F-Test"; vD.Run(); vD.Display(); }
private void aToolStripMenuItem_Click_1(object sender, EventArgs e) { //if (CompleteScreening.ListDescriptors.GetListNameActives().Count <= 1) //{ // MessageBox.Show("MINE Analysis requires at least two activated descriptors\n", "Error !", MessageBoxButtons.OK, MessageBoxIcon.Error); // return; //} //bool IsFullScreen = false; //List<double>[] ListValueDesc = ExtractDesciptorAverageValuesList(IsFullScreen); //DisplayMINE(ListValueDesc); cGUI_ListClasses GUI_ListClasses = new cGUI_ListClasses(); if (GUI_ListClasses.Run().IsSucceed == false) return; cExtendedList ListClassSelected = GUI_ListClasses.GetOutPut()[0]; if (ProcessModeplateByPlateToolStripMenuItem.Checked) { cDesignerTab DT = new cDesignerTab(); foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive) { cListWells ListWellsToProcess = new cListWells(null); foreach (cWell item in TmpPlate.ListActiveWells) { if (item.GetCurrentClassIdx() != -1) { if (ListClassSelected[item.GetCurrentClassIdx()] == 1) ListWellsToProcess.Add(item); } } cExtendedTable NewTable = new cExtendedTable(ListWellsToProcess, true); cMineAnalysis MA = new cMineAnalysis(); MA.SetInputData(NewTable); MA.Is_BriefReport = true; MA.CurrentScreening = cGlobalInfo.CurrentScreening; MA.Run(); cDesignerTab SubDT = new cDesignerTab(); foreach (var item in MA.GetOutPut()) { cViewerTable SubTable = new cViewerTable(); SubTable.Title = "MINE - " + item.Name; SubTable.SetInputData(item); SubTable.Run(); SubDT.SetInputData(SubTable.GetOutPut()); } SubDT.Title = TmpPlate.GetName(); SubDT.Run(); DT.SetInputData(SubDT.GetOutPut()); } DT.Run(); cDisplayToWindow TmpvD = new cDisplayToWindow(); TmpvD.SetInputData(DT.GetOutPut()); TmpvD.Title = "MINE analysis - " + cGlobalInfo.CurrentScreening.ListPlatesActive.Count + " plates"; TmpvD.Run(); TmpvD.Display(); } else if (ProcessModeCurrentPlateOnlyToolStripMenuItem.Checked) { cPlate TmpPlate = cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate(); cListWells ListWellsToProcess = new cListWells(null); foreach (cWell item in TmpPlate.ListActiveWells) { if (item.GetCurrentClassIdx() != -1) { if (ListClassSelected[item.GetCurrentClassIdx()] == 1) ListWellsToProcess.Add(item); } } cExtendedTable NewTable = new cExtendedTable(ListWellsToProcess, true); cMineAnalysis MA = new cMineAnalysis(); MA.SetInputData(NewTable); MA.Is_BriefReport = true; MA.CurrentScreening = cGlobalInfo.CurrentScreening; MA.Run(); cDesignerTab SubDT = new cDesignerTab(); foreach (var item in MA.GetOutPut()) { cViewerTable SubTable = new cViewerTable(); SubTable.Title = "MINE - " + item.Name; SubTable.SetInputData(item); SubTable.Run(); SubDT.SetInputData(SubTable.GetOutPut()); } SubDT.Title = TmpPlate.GetName(); SubDT.Run(); cDisplayToWindow TmpvD = new cDisplayToWindow(); TmpvD.SetInputData(SubDT.GetOutPut()); TmpvD.Title = "MINE analysis - " + TmpPlate.GetName() + " : " + ListWellsToProcess.Count + " wells"; TmpvD.Run(); TmpvD.Display(); } else if (ProcessModeEntireScreeningToolStripMenuItem.Checked) { cListWells ListWellsToProcess = new cListWells(null); foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive) foreach (cWell item in TmpPlate.ListActiveWells) if (item.GetCurrentClassIdx() != -1) if (ListClassSelected[item.GetCurrentClassIdx()] == 1) ListWellsToProcess.Add(item); cExtendedTable NewTable = new cExtendedTable(ListWellsToProcess, true); cMineAnalysis MA = new cMineAnalysis(); MA.SetInputData(NewTable); MA.Is_BriefReport = true; MA.CurrentScreening = cGlobalInfo.CurrentScreening; MA.Run(); cDesignerTab SubDT = new cDesignerTab(); foreach (var item in MA.GetOutPut()) { cViewerTable SubTable = new cViewerTable(); SubTable.Title = "MINE - " + item.Name; SubTable.SetInputData(item); SubTable.Run(); SubDT.SetInputData(SubTable.GetOutPut()); } SubDT.Run(); cDisplayToWindow TmpvD = new cDisplayToWindow(); TmpvD.SetInputData(SubDT.GetOutPut()); TmpvD.Title = "MINE analysis : " + ListWellsToProcess.Count + " wells"; TmpvD.Run(); TmpvD.Display(); } }
private void dToolStripMenuItem_Click(object sender, EventArgs e) { cFeedBackMessage MessageReturned; cGUI_ListClasses GUI_ListClasses = new cGUI_ListClasses(); GUI_ListClasses.IsCheckBoxes = true; GUI_ListClasses.IsSelectAll = true; if (GUI_ListClasses.Run().IsSucceed == false) return; cExtendedList ListClassSelected = GUI_ListClasses.GetOutPut()[0]; List<cWellClassType> ListWellClassesSelected = new List<cWellClassType>(); foreach (var item in ListClassSelected.ListTags) { ListWellClassesSelected.Add((cWellClassType)(item)); } cViewerGraph1D V1D = new cViewerGraph1D(); V1D.Chart.IsSelectable = true; V1D.Chart.LabelAxisX = "Well Index"; V1D.Chart.LabelAxisY = cGlobalInfo.CurrentScreening.ListDescriptors[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetName(); V1D.Chart.IsXGrid = true; if (ProcessModeCurrentPlateOnlyToolStripMenuItem.Checked) { cExtendedTable DataFromPlate = new cExtendedTable(cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate().ListActiveWells, cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx, ListClassSelected); DataFromPlate.Name = cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate().GetName(); V1D.Chart.IsShadow = true; V1D.Chart.IsBorder = true; //V1D.Chart.IsSelectable = true; V1D.Chart.CurrentTitle.Tag = cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate(); V1D.SetInputData(DataFromPlate); V1D.Run(); cDesignerSplitter DS = new cDesignerSplitter(); DS.Orientation = System.Windows.Forms.Orientation.Horizontal; DS.SetInputData(V1D.GetOutPut()); cExtendedTable NewTable = cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate().ListActiveWells.Filter(ListWellClassesSelected).GetAverageDescriptorValues(cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx); NewTable.Name = "Histogram"; cViewerStackedHistogram CV1 = new cViewerStackedHistogram(); CV1.SetInputData(NewTable); CV1.Chart.LabelAxisX = cGlobalInfo.CurrentScreening.ListDescriptors[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetName(); CV1.Run(); DS.SetInputData(CV1.GetOutPut()); DS.Run(); cDisplayToWindow Disp0 = new cDisplayToWindow(); Disp0.SetInputData(DS.GetOutPut()); Disp0.Title = "Scatter points graph - " + DataFromPlate[0].Count + " wells."; if (!Disp0.Run().IsSucceed) return; Disp0.Display(); } else if (ProcessModeEntireScreeningToolStripMenuItem.Checked) { V1D.Chart.MarkerSize = 5; V1D.Chart.IsBorder = false; V1D.Chart.IsShadow = false; cListWells ListWell = new cListWells(null); int IdxWellForPlateSeparator = 0; foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive) { foreach (cWell TmpWell in TmpPlate.ListActiveWells) { int ClassTmp = TmpWell.GetCurrentClassIdx(); if ((ClassTmp == -1) || (GUI_ListClasses.GetOutPut()[0][TmpWell.GetCurrentClassIdx()] == 0)) continue; ListWell.Add(TmpWell); IdxWellForPlateSeparator++; } if (cGlobalInfo.OptionsWindow.FFAllOptions.checkBoxDisplayPlatesVerticalLines.Checked) { Classes.Base_Classes.General.cLineVerticalForGraph VL = new Classes.Base_Classes.General.cLineVerticalForGraph(IdxWellForPlateSeparator + 0.5); VL.IsAllowMoving = false; V1D.Chart.ListVerticalLines.Add(VL); } } cExtendedTable DataFromPlate = new cExtendedTable(ListWell, cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx, ListClassSelected); DataFromPlate.Name = cGlobalInfo.CurrentScreening.GetName() + " - " + cGlobalInfo.CurrentScreening.ListPlatesActive.Count + " plates"; int MaxNumberOfPts = (int)cGlobalInfo.OptionsWindow.FFAllOptions.numericUpDownMinNumPointForFastDisp.Value; if (ListWell.Count > MaxNumberOfPts) { cGlobalInfo.WindowHCSAnalyzer.richTextBoxConsole.AppendText("\n" + V1D.Title + ": Number of Wells is Higher than " + MaxNumberOfPts + " => Switching to FastPoints Mode.\n"); V1D.Chart.ISFastPoint = true; } V1D.SetInputData(DataFromPlate); V1D.Run(); cDesignerSplitter DS = new cDesignerSplitter(); DS.Orientation = System.Windows.Forms.Orientation.Horizontal; DS.SetInputData(V1D.GetOutPut()); cExtendedTable NewTable = ListWell.GetAverageDescriptorValues(cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx); NewTable.Name = "Histogram"; cViewerStackedHistogram CV1 = new cViewerStackedHistogram(); CV1.SetInputData(NewTable); CV1.Chart.LabelAxisX = cGlobalInfo.CurrentScreening.ListDescriptors[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetName(); CV1.Run(); DS.SetInputData(CV1.GetOutPut()); DS.Run(); cDisplayToWindow Disp0 = new cDisplayToWindow(); Disp0.SetInputData(DS.GetOutPut()); Disp0.Title = "Scatter points graph - " + DataFromPlate[0].Count + " wells."; if (!Disp0.Run().IsSucceed) return; Disp0.Display(); } else if (ProcessModeplateByPlateToolStripMenuItem.Checked) { cDesignerTab CDT = new cDesignerTab(); foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive) { cExtendedTable DataFromPlate = new cExtendedTable(TmpPlate.ListActiveWells, cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx, ListClassSelected); DataFromPlate.Name = TmpPlate.GetName(); V1D = new cViewerGraph1D(); V1D.Chart.IsSelectable = true; V1D.Chart.LabelAxisX = "Well Index"; V1D.Chart.LabelAxisY = cGlobalInfo.CurrentScreening.ListDescriptors[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetName(); V1D.Chart.IsXGrid = true; V1D.Chart.CurrentTitle.Tag = TmpPlate; V1D.SetInputData(DataFromPlate); V1D.Title = TmpPlate.GetName(); V1D.Run(); cDesignerSplitter DS = new cDesignerSplitter(); DS.Orientation = System.Windows.Forms.Orientation.Horizontal; DS.SetInputData(V1D.GetOutPut()); cExtendedTable NewTable = TmpPlate.ListActiveWells.Filter(ListWellClassesSelected).GetAverageDescriptorValues(cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx); NewTable.Name = "Histogram"; cViewerStackedHistogram CV1 = new cViewerStackedHistogram(); CV1.SetInputData(NewTable); CV1.Chart.LabelAxisX = cGlobalInfo.CurrentScreening.ListDescriptors[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetName(); CV1.Run(); DS.Title = TmpPlate.GetName(); DS.SetInputData(CV1.GetOutPut()); DS.Run(); CDT.SetInputData(DS.GetOutPut()); } CDT.Run(); cDisplayToWindow Disp0 = new cDisplayToWindow(); Disp0.SetInputData(CDT.GetOutPut()); Disp0.Title = "Scatter points graphs"; if (!Disp0.Run().IsSucceed) return; Disp0.Display(); } }
private void testBoxPlotToolStripMenuItem_Click(object sender, EventArgs e) { cGUI_ListClasses GUI_ListClasses = new cGUI_ListClasses(); if (GUI_ListClasses.Run().IsSucceed == false) return; cExtendedList ListClassSelected = GUI_ListClasses.GetOutPut()[0]; if (ListClassSelected.Sum() < 1) { MessageBox.Show("At least one classe has to be selected.", "Error !", MessageBoxButtons.OK, MessageBoxIcon.Error); return; } cPlate TmpPlate = cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate(); cListWells ListWellsToProcess = new cListWells(null); // cExtendedList ListClasses = new cExtendedList(); // ListClasses.Name = "Classes"; foreach (cWell item in TmpPlate.ListActiveWells) { if (item.GetCurrentClassIdx() != -1) { if (ListClassSelected[item.GetCurrentClassIdx()] == 1) { ListWellsToProcess.Add(item); // ListClasses.Add(item.GetClassIdx()); } } } cExtendedTable NewTable = new cExtendedTable(ListWellsToProcess, true); // NewTable.Add(ListClasses); cViewerBoxPlot CV = new cViewerBoxPlot(); CV.SetInputData(NewTable); CV.Run(); //cDesignerSinglePanel CDP = new cDesignerSinglePanel(); //CDP.SetInputData(CV.GetOutPut()); //CDP.Run(); cDisplayToWindow CDW = new cDisplayToWindow(); CDW.SetInputData(CV.GetOutPut()); CDW.Title = CV.Title; CDW.Run(); CDW.Display(); }
private void normalProbabilityPlotToolStripMenuItem2_Click(object sender, EventArgs e) { cGUI_ListClasses GUI_ListClasses = new cGUI_ListClasses(); GUI_ListClasses.IsCheckBoxes = true; GUI_ListClasses.IsSelectAll = true; if (GUI_ListClasses.Run().IsSucceed == false) return; cExtendedTable ListClassSelected = new cExtendedTable(GUI_ListClasses.GetOutPut());// GetOutPut(); int IdxClass = -1; for (int IdxC = 0; IdxC < ListClassSelected[0].Count; IdxC++) { if (ListClassSelected[0][IdxC] == 1) IdxClass = IdxC; } #region single plate and plate by plate cDescriptorType CurrentDesc = cGlobalInfo.CurrentScreening.ListDescriptors.GetActiveDescriptor(); cDesignerTab DT = new cDesignerTab(); if ((ProcessModeCurrentPlateOnlyToolStripMenuItem.Checked) || (ProcessModeplateByPlateToolStripMenuItem.Checked)/*||(ProcessModeEntireScreeningToolStripMenuItem.Checked)*/) { List<cPlate> ListPlatesToProcess = new List<cPlate>(); if ((ProcessModeplateByPlateToolStripMenuItem.Checked)) { foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive) ListPlatesToProcess.Add(TmpPlate); } else ListPlatesToProcess.Add(cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate()); foreach (cPlate TmpPlate in ListPlatesToProcess) { cListWells ListWellsToProcess1 = new cListWells(null); foreach (cWell item in TmpPlate.ListActiveWells) { if (item.GetCurrentClassIdx() != -1) { if (ListClassSelected[0][item.GetCurrentClassIdx()] == 1) ListWellsToProcess1.Add(item); } } cComputeAndDisplayNormalPlot CADP = new cComputeAndDisplayNormalPlot(); CADP.SetInputData(ListWellsToProcess1); CADP.Run(); cExtendedControl ControlForTab = CADP.GetOutPut(); ControlForTab.Title = TmpPlate.GetName(); DT.SetInputData(ControlForTab); } DT.Run(); cDisplayToWindow CDW = new cDisplayToWindow(); CDW.SetInputData(DT.GetOutPut());//VG1.GetOutPut()); if (ProcessModeCurrentPlateOnlyToolStripMenuItem.Checked) CDW.Title = "Normal Probability Plot - " + CurrentDesc.GetName() + " - " + ListPlatesToProcess[0].GetName(); else CDW.Title = "Normal Probability Plot - " + CurrentDesc.GetName() + " - " + ListPlatesToProcess.Count + " plates"; CDW.Run(); CDW.Display(); } #endregion //#region entire screening else if (ProcessModeEntireScreeningToolStripMenuItem.Checked) { List<cPlate> ListPlatesToProcess = new List<cPlate>(); foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive) ListPlatesToProcess.Add(TmpPlate); cListWells ListWellsToProcess1 = new cListWells(null); foreach (cPlate TmpPlate in ListPlatesToProcess) { foreach (cWell item in TmpPlate.ListActiveWells) { if (item.GetCurrentClassIdx() != -1) { if (ListClassSelected[0][item.GetCurrentClassIdx()] == 1) ListWellsToProcess1.Add(item); } } } cComputeAndDisplayNormalPlot CADP = new cComputeAndDisplayNormalPlot(); CADP.SetInputData(ListWellsToProcess1); CADP.Run(); cExtendedControl ControlForTab = CADP.GetOutPut(); cDisplayToWindow CDW = new cDisplayToWindow(); CDW.SetInputData(ControlForTab);//VG1.GetOutPut()); CDW.Title = "Normal Probability Plot - " + CurrentDesc.GetName() + " - " + ListPlatesToProcess.Count + " plates"; CDW.Run(); CDW.Display(); } // ComputeAndDisplayMormalProbabilityPlot(false); }
private void PopValueDescItem(object sender, EventArgs e) { cGUI_ListClasses GUI_ListClasses = new cGUI_ListClasses(); GUI_ListClasses.ClassType = eClassType.PHENOTYPE; GUI_ListClasses.IsCheckBoxes = true; if (GUI_ListClasses.Run().IsSucceed == false) return; List<cCellularPhenotype> LCP0 = new List<cCellularPhenotype>(); for (int IdxPheno = 0; IdxPheno < GUI_ListClasses.GetOutPut()[0].Count; IdxPheno++) { if (GUI_ListClasses.GetOutPut()[0][IdxPheno] == 1) LCP0.Add(cGlobalInfo.ListCellularPhenotypes[IdxPheno]); } //if (LCP.Count == 0) return; string description = "Number of elements of:\n"; foreach (var item in LCP0) description += item.Name + "\n"; cDescriptorType NewAverageType = new cDescriptorType("Object_count", true, 1, description); cGlobalInfo.CurrentScreening.ListDescriptors.AddNew(NewAverageType); FormForProgress ProgressWindow = new FormForProgress(); ProgressWindow.Show(); int IdxProgress = 0; int MaxProgress = 0; foreach (cPlate CurrentPlateToProcess in cGlobalInfo.CurrentScreening.ListPlatesAvailable) MaxProgress += (int)CurrentPlateToProcess.ListWells.Count; ProgressWindow.progressBar.Maximum = MaxProgress; foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesAvailable) { foreach (cWell Tmpwell in TmpPlate.ListWells) { TmpPlate.DBConnection = new cDBConnection(TmpPlate, Tmpwell.SQLTableName); List<cDescriptorType> LDT = new List<cDescriptorType>(); LDT.Add(cGlobalInfo.CurrentScreening.ListDescriptors[0]); cExtendedTable CT = TmpPlate.DBConnection.GetWellValues(Tmpwell, LDT, LCP0, 1); double NumObject0 = CT[0].Count; //cExtendedTable CT1 = TmpPlate.DBConnection.GetWellValues(Tmpwell, LDT, LCP1, 1); //double NumObject1 = CT1[0].Count; cListSignature LDesc = new cListSignature(); cSignature NewDesc = new cSignature((double)NumObject0, NewAverageType, cGlobalInfo.CurrentScreening); LDesc.Add(NewDesc); Tmpwell.AddSignatures(LDesc); TmpPlate.DBConnection.CloseConnection(); ProgressWindow.richTextBoxForComment.AppendText(TmpPlate.GetName() + " : " + Tmpwell.GetShortInfo().Remove(Tmpwell.GetShortInfo().Length - 2) + "\n"); ProgressWindow.progressBar.Value = IdxProgress++; ProgressWindow.Refresh(); } } ProgressWindow.Close(); cGlobalInfo.CurrentScreening.ListDescriptors.UpDateDisplay(); cGlobalInfo.CurrentScreening.UpDatePlateListWithFullAvailablePlate(); for (int idxP = 0; idxP < cGlobalInfo.CurrentScreening.ListPlatesActive.Count; idxP++) cGlobalInfo.CurrentScreening.ListPlatesActive[idxP].UpDataMinMax(); }
/// <summary> /// This function displays the evolution of the average value of a certain descriptor through the plates, for a specified class /// </summary> /// <param name="sender"></param> /// <param name="e"></param> private void descriptorEvolutionToolStripMenuItem_Click(object sender, EventArgs e) { // if (CompleteScreening == null) return; #region extract classes of interest cGUI_ListClasses GUI_ListClasses = new cGUI_ListClasses(); GUI_ListClasses.IsCheckBoxes = !_DescEvolCellByCellItem.Checked; GUI_ListClasses.IsSelectAll = false; if (GUI_ListClasses.Run().IsSucceed == false) return; cExtendedTable ListClassSelected = GUI_ListClasses.GetOutPut(); if (ListClassSelected.Sum() < 1) { MessageBox.Show("At least one classe has to be selected.", "Error !", MessageBoxButtons.OK, MessageBoxIcon.Error); return; } #endregion cDescriptorType DT = cGlobalInfo.CurrentScreening.ListDescriptors.GetActiveDescriptor(); cGUI_ListPlates GUI_ListPlates = new cGUI_ListPlates(); GUI_ListPlates.IsCheckBoxes = true; GUI_ListPlates.ListInitialPlates = cGlobalInfo.CurrentScreening.ListPlatesActive; // GUI_ListClasses.ListInitialPlates = null; cFeedBackMessage FBM = GUI_ListPlates.Run(); richTextBoxConsole.AppendText(FBM.Message); if (!FBM.IsSucceed) return; cListPlates LP = GUI_ListPlates.GetOutPut(); if (_DescEvolCellByCellItem.Checked) { cExtendedTable FinalTable = new cExtendedTable(); foreach (cPlate CurrentPlate in LP) { cExtendedTable TmpFinalTable = new cExtendedTable(); int NumberOfWells = 0; foreach (cWell item in CurrentPlate.ListActiveWells) { if (item.GetCurrentClassIdx() == -1) continue; if (ListClassSelected[0][item.GetCurrentClassIdx()] == 1) { cExtendedTable TmpET = item.GetValuesList(DT); if (TmpFinalTable.Count == 0) { TmpFinalTable = new cExtendedTable(TmpET); } else { cMerge M = new cMerge(); M.IsHorizontal = false; M.SetInputData(TmpFinalTable, TmpET); M.Run(); TmpFinalTable = M.GetOutPut(); } NumberOfWells++; } } if (NumberOfWells == 0) continue; if (FinalTable.Count == 0) { FinalTable = new cExtendedTable(TmpFinalTable); FinalTable[0].Name = CurrentPlate.GetName() + " (" + NumberOfWells + " wells)"; } else { cMerge M = new cMerge(); M.IsHorizontal = true; TmpFinalTable[0].Name = CurrentPlate.GetName() + " (" + NumberOfWells + " wells)"; M.SetInputData(FinalTable, TmpFinalTable); M.Run(); FinalTable = M.GetOutPut(); } } cViewerHistogram VH = new cViewerHistogram(); FinalTable.Name = DT.GetName(); VH.Chart.LabelAxisX = DT.GetName(); VH.Chart.IsArea = true; VH.Chart.IsPoint = false; //VH.Chart.IsBar = false; //VH.Chart.IsShadow = true; VH.Chart.IsXGrid = VH.Chart.IsYGrid = false; VH.Chart.Opacity = 200; VH.Chart.IsLegend = true; VH.SetInputData(FinalTable); VH.Chart.CurrentTitle.Text = cGlobalInfo.CurrentScreening.ListPlatesActive.Count + " plates"; VH.Run(); cDisplayToWindow DTW = new cDisplayToWindow(); DTW.SetInputData(VH.GetOutPut()); DTW.Title = "Cell-by-Cell Descriptor Evolution"; DTW.Run(); DTW.Display(); //cExtendedTable ET = CompleteScreening.GetCurrentDisplayPlate().DBConnection.GetWellValues( // this.AssociatedPlate.DBConnection.GetWellValues(this, // LCDT, // ListCellularPhenotypesToBeSelected); } else { cDisplayDescriptorEvolutions DEV = new cDisplayDescriptorEvolutions(); DEV.ListPlates = LP; DEV.SetInputData(ListClassSelected); DEV.Run(cGlobalInfo.CurrentScreening); } }
private void ToolStripMenuItem_DisplaySingleCellHistogram(object sender, EventArgs e) { cListWells ListWells = new cListWells(); List<cDescriptorType> LCDT = new List<cDescriptorType>(); LCDT.Add(cGlobalInfo.CurrentScreening.ListDescriptors.GetActiveDescriptor()); List<cWellClassType> ListForCurrentClass = new List<cWellClassType>(); ListForCurrentClass.Add(this); cGUI_ListClasses GUIClasses = new cGUI_ListClasses(); GUIClasses.IsCheckBoxes = true; GUIClasses.IsSelectAll = true; GUIClasses.ClassType = eClassType.PHENOTYPE; if (!GUIClasses.Run().IsSucceed) return; cDesignerTab DT = new cDesignerTab(); if (cGlobalInfo.WindowHCSAnalyzer.ProcessModeEntireScreeningToolStripMenuItem.Checked) { foreach (cPlate CurrentPlate in cGlobalInfo.CurrentScreening.ListPlatesActive) { ListWells.AddRange(CurrentPlate.ListWells.Filter(ListForCurrentClass)); } cExtendedTable FinalTable = new cExtendedTable(); FinalTable.Name = "Stacked Histogram: " + ListWells.Count + " wells"; int Idx = 0; foreach (var item in cGlobalInfo.ListCellularPhenotypes) { FinalTable.Add(new cExtendedList()); FinalTable[Idx].Name = item.Name; FinalTable[Idx].Tag = item; Idx++; } foreach (cWell TmpWell in ListWells) { TmpWell.AssociatedPlate.DBConnection = new cDBConnection(TmpWell.AssociatedPlate, TmpWell.SQLTableName); int IDx = 0; foreach (var item in cGlobalInfo.ListCellularPhenotypes) { if (GUIClasses.GetOutPut()[0][IDx] == 0) { IDx++; continue; } List<cCellularPhenotype> ListCellularPhenotypesToBeSelected = new List<cCellularPhenotype>(); ListCellularPhenotypesToBeSelected.Add(item); cExtendedTable TmpET = TmpWell.AssociatedPlate.DBConnection.GetWellValues(TmpWell, LCDT, ListCellularPhenotypesToBeSelected); if (TmpET.Count > 0) FinalTable[IDx].AddRange(TmpET[0]); IDx++; } TmpWell.AssociatedPlate.DBConnection.CloseConnection(); } cViewerStackedHistogram VSH = new cViewerStackedHistogram(); VSH.SetInputData(FinalTable); VSH.Chart.BinNumber = LCDT[0].GetBinNumber(); VSH.Chart.IsShadow = false; VSH.Chart.IsBorder = false; VSH.Chart.IsXGrid = true; VSH.Chart.IsYGrid = true; VSH.Chart.LabelAxisX = LCDT[0].GetName(); VSH.Run(); VSH.Chart.Width = 0; VSH.Chart.Height = 0; VSH.GetOutPut().Title = cGlobalInfo.CurrentScreening.GetName(); DT.SetInputData(VSH.GetOutPut()); } else { cListPlates ListPlates = new cListPlates(); if (cGlobalInfo.WindowHCSAnalyzer.ProcessModeplateByPlateToolStripMenuItem.Checked) ListPlates = cGlobalInfo.CurrentScreening.ListPlatesActive; else ListPlates.Add(cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate()); foreach (cPlate CurrentPlate in ListPlates) { ListWells = CurrentPlate.ListWells.Filter(ListForCurrentClass); cExtendedTable FinalTable = new cExtendedTable(); FinalTable.Name = "Stacked Histogram: " + ListWells.Count + " wells - " + CurrentPlate.GetName(); int Idx = 0; foreach (var item in cGlobalInfo.ListCellularPhenotypes) { FinalTable.Add(new cExtendedList()); FinalTable[Idx].Name = item.Name; FinalTable[Idx].Tag = item; if (GUIClasses.GetOutPut()[0][Idx] == 0) { Idx++; continue; } Idx++; } foreach (cWell TmpWell in ListWells) { TmpWell.AssociatedPlate.DBConnection = new cDBConnection(TmpWell.AssociatedPlate, TmpWell.SQLTableName); int IDx = 0; foreach (var item in cGlobalInfo.ListCellularPhenotypes) { if (GUIClasses.GetOutPut()[0][IDx] == 0) { IDx++; continue; } List<cCellularPhenotype> ListCellularPhenotypesToBeSelected = new List<cCellularPhenotype>(); ListCellularPhenotypesToBeSelected.Add(item); cExtendedTable TmpET = TmpWell.AssociatedPlate.DBConnection.GetWellValues(TmpWell, LCDT, ListCellularPhenotypesToBeSelected); if (TmpET.Count > 0) FinalTable[IDx].AddRange(TmpET[0]); IDx++; } TmpWell.AssociatedPlate.DBConnection.CloseConnection(); } cViewerStackedHistogram VSH = new cViewerStackedHistogram(); VSH.SetInputData(FinalTable); VSH.Chart.BinNumber = LCDT[0].GetBinNumber(); VSH.Chart.IsShadow = false; VSH.Chart.IsBorder = false; VSH.Chart.IsXGrid = true; VSH.Chart.IsYGrid = true; VSH.Chart.LabelAxisX = LCDT[0].GetName(); VSH.Run(); VSH.Chart.Width = 0; VSH.Chart.Height = 0; VSH.GetOutPut().Title = CurrentPlate.GetName(); DT.SetInputData(VSH.GetOutPut()); } } DT.Run(); cDisplayToWindow DTW = new cDisplayToWindow(); DTW.SetInputData(DT.GetOutPut()); DTW.Title = "Single Cell Histograms"; DTW.Run(); DTW.Display(); }
private void histogramsToolStripMenuItem_Click(object sender, EventArgs e) { cGUI_ListClasses GUIClasses = new cGUI_ListClasses(); GUIClasses.IsCheckBoxes = false; GUIClasses.ClassType = eClassType.PHENOTYPE; if (!GUIClasses.Run().IsSucceed) return; cGUI_ListClasses GUIClassesWells = new cGUI_ListClasses(); GUIClassesWells.IsCheckBoxes = true; GUIClassesWells.ClassType = eClassType.WELL; if (!GUIClassesWells.Run().IsSucceed) return; List<cWellClassType> ListClass = new List<cWellClassType>(); for (int i = 0; i < GUIClassesWells.GetOutPut()[0].Count; i++) { if (GUIClassesWells.GetOutPut()[0][i] == 1) ListClass.Add(cGlobalInfo.ListWellClasses[i]); } cGUI_ListPlates GUIListPlates = new cGUI_ListPlates(); GUIListPlates.IsCheckBoxes = true; if (!GUIListPlates.Run().IsSucceed) return; List<cDescriptorType> LCDT = new List<cDescriptorType>(); LCDT.Add(cGlobalInfo.CurrentScreening.ListDescriptors.GetActiveDescriptor()); cDesignerTab DT = new cDesignerTab(); DT.IsMultiline = false; foreach (var TmpPlate in GUIListPlates.GetOutPut()) { cListWells CurrentPlateListWells = TmpPlate.ListWells.Filter(ListClass); cExtendedTable FinalTable = new cExtendedTable(); FinalTable.Name = TmpPlate.GetName() + " - " + CurrentPlateListWells.Count + " wells"; for (int i = 0; i < GUIClasses.GetOutPut()[0].Count; i++) { if (GUIClasses.GetOutPut()[0][i] == 1) { FinalTable.Add(new cExtendedList()); FinalTable[0].Name = cGlobalInfo.ListCellularPhenotypes[i].Name; FinalTable[0].Tag = cGlobalInfo.ListCellularPhenotypes[i]; } } foreach (cWell TmpWell in CurrentPlateListWells) { TmpWell.AssociatedPlate.DBConnection = new cDBConnection(TmpWell.AssociatedPlate, TmpWell.SQLTableName); for (int i = 0; i < GUIClasses.GetOutPut()[0].Count; i++) { if (GUIClasses.GetOutPut()[0][i] == 1) { List<cCellularPhenotype> ListCellularPhenotypesToBeSelected = new List<cCellularPhenotype>(); ListCellularPhenotypesToBeSelected.Add(cGlobalInfo.ListCellularPhenotypes[i]); cExtendedTable TmpET = TmpWell.AssociatedPlate.DBConnection.GetWellValues(TmpWell, LCDT, ListCellularPhenotypesToBeSelected); if (TmpET.Count > 0) FinalTable[0].AddRange(TmpET[0]); break; } } TmpWell.AssociatedPlate.DBConnection.CloseConnection(); } cViewerHistogram VH = new cViewerHistogram(); //cViewerStackedHistogram VSH = new cViewerStackedHistogram(); VH.SetInputData(FinalTable); //VH.Chart.BinNumber = -1; //VSH.Chart.Is //VH.ListProperties.FindByName("Bin Number").SetNewValue((int)100); //VH.ListProperties.FindByName("Bin Number").IsGUIforValue = true; // VSH.Chart.BinNumber = LCDT[0].GetBinNumber(); VH.Chart.IsShadow = false; VH.Chart.IsBorder = true; VH.Chart.IsXGrid = true; VH.Chart.IsHistoNormalized = true; VH.Chart.IsBar = true; VH.Chart.IsYGrid = true; VH.Chart.LabelAxisX = LCDT[0].GetName(); VH.Title = TmpPlate.GetName(); VH.Run(); VH.Chart.Width = 0; VH.Chart.Height = 0; cDesignerSplitter DS = new cDesignerSplitter(); DS.Orientation = Orientation.Vertical; DS.SetInputData(VH.GetOutPut()); cHistogramBuilder HB = new cHistogramBuilder(); HB.SetInputData(FinalTable); HB.BinNumber = -1; HB.IsNormalized = true; HB.Run(); cViewerTable VT = new cViewerTable(); VT.SetInputData(HB.GetOutPut()); VT.Run(); DS.SetInputData(VT.GetOutPut()); DS.Title = TmpPlate.GetName(); DS.Run(); //DS.SetInputData(HB.Get DT.SetInputData(DS.GetOutPut()); } DT.Run(); cDisplayToWindow DTW = new cDisplayToWindow(); DTW.SetInputData(DT.GetOutPut()); DTW.Title = "Single cell based Histograms"; DTW.Run(); DTW.Display(); }
private void correlationMatrixToolStripMenuItem1_Click(object sender, EventArgs e) { if (checkedListBoxActiveDescriptors.CheckedItems.Count <= 1) { MessageBox.Show("At least two descriptors have to be selected", "Error", MessageBoxButtons.OK, MessageBoxIcon.Error); return; } if (checkedListBoxActiveDescriptors.CheckedItems.Count <= 1) { MessageBox.Show("At least two descriptors have to be selected", "Error", MessageBoxButtons.OK, MessageBoxIcon.Error); return; } cGUI_ListClasses GUI_ListClasses = new cGUI_ListClasses(); GUI_ListClasses.IsCheckBoxes = true; GUI_ListClasses.IsSelectAll = true; if (GUI_ListClasses.Run().IsSucceed == false) return; cExtendedList ListClassSelected = GUI_ListClasses.GetOutPut()[0]; if (ListClassSelected.Sum() < 1) { MessageBox.Show("At least one classe has to be selected.", "Error !", MessageBoxButtons.OK, MessageBoxIcon.Error); return; } cDesignerTab DT = new cDesignerTab(); if (this.ProcessModeplateByPlateToolStripMenuItem.Checked) { foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive) { //ListWellsToProcess.AddRange(TmpPlate.ListActiveWells); cListWells ListWellsToProcess = new cListWells(null); foreach (cWell item in TmpPlate.ListActiveWells) { if ((item.GetCurrentClassIdx() != -1) && (ListClassSelected[item.GetCurrentClassIdx()] == 1)) ListWellsToProcess.Add(item); } cExtendedTable NewTable = new cExtendedTable(ListWellsToProcess, true); cCorrelationMatrix CM = new cCorrelationMatrix(); CM.SetInputData(NewTable); CM.Run(); cExtendedTable CorrelationMatrix = CM.GetOutPut(); weka.core.Instances Insts = CorrelationMatrix.CreateWekaInstances(); weka.clusterers.HierarchicalClusterer ClustererToReturn = new weka.clusterers.HierarchicalClusterer(); // string OptionDistance = " -N " + (int)Parameters.ListDoubleValues.Get("numericUpDownNumClasses").Value; //string DistanceType = (string)Parameters.ListTextValues.Get("comboBoxDistance").Value; //OptionDistance += " -A \"weka.core."; //switch (DistanceType) //{ // case "Euclidean": // OptionDistance += "EuclideanDistance"; // break; // case "Manhattan": // OptionDistance += "ManhattanDistance"; // break; // case "Chebyshev": // OptionDistance += "ChebyshevDistance"; // break; // default: // break; //} //if (!(bool)Parameters.ListCheckValues.Get("checkBoxNormalize").Value) // OptionDistance += " -D"; //OptionDistance += " -R "; //OptionDistance += "first-last\""; //string WekaOption = "-L " + (string)Parameters.ListTextValues.Get("comboBoxLinkType").Value + OptionDistance; ((weka.clusterers.HierarchicalClusterer)ClustererToReturn).setOptions(weka.core.Utils.splitOptions("-N 1 -L SINGLE -P -A \"weka.core.EuclideanDistance -R first-last\" ")); ClustererToReturn.buildClusterer(Insts); //this.NumberOfClusters = ClustererToReturn.numberOfClusters(); cInfoForHierarchical IFH = new cInfoForHierarchical(); IFH.ListInstances = Insts; cDendoGram DENDO = new cDendoGram(((weka.clusterers.HierarchicalClusterer)ClustererToReturn), IFH, GlobalInfo); //cViewerHeatMap VHM = new cViewerHeatMap(); cViewerTable VHM = new cViewerTable(); VHM.SetInputData(CM.GetOutPut()); //VHM.IsDisplayValues = true; VHM.Title = "Correlation - " + TmpPlate.GetName() + " (" + ListWellsToProcess.Count + " wells)"; VHM.Run(); VHM.GetOutPut().Title = TmpPlate.GetName(); DT.SetInputData(VHM.GetOutPut()); } } else if (this.ProcessModeEntireScreeningToolStripMenuItem.Checked) { cListWells ListWellsToProcess = new cListWells(null); foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive) { foreach (cWell item in TmpPlate.ListActiveWells) if ((item.GetCurrentClassIdx() != -1) && (ListClassSelected[item.GetCurrentClassIdx()] == 1)) ListWellsToProcess.Add(item); } cExtendedTable NewTable = new cExtendedTable(ListWellsToProcess, true); cCorrelationMatrix CM = new cCorrelationMatrix(); CM.SetInputData(NewTable); CM.Run(); //cViewerHeatMap VHM = new cViewerHeatMap(); cViewerTable VHM = new cViewerTable(); VHM.SetInputData(CM.GetOutPut()); //VHM.IsDisplayValues = true; VHM.Title = "Correlation - Entire screening (" + ListWellsToProcess.Count + " wells)"; VHM.Run(); DT.SetInputData(VHM.GetOutPut()); } else { cListWells ListWellsToProcess = new cListWells(null); foreach (cWell item in cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate().ListActiveWells) if ((item.GetCurrentClassIdx() != -1) && (ListClassSelected[item.GetCurrentClassIdx()] == 1)) ListWellsToProcess.Add(item); cExtendedTable NewTable = new cExtendedTable(ListWellsToProcess, true); cCorrelationMatrix CM = new cCorrelationMatrix(); CM.SetInputData(NewTable); CM.Run(); //cViewerHeatMap VHM = new cViewerHeatMap(); cViewerTable VHM = new cViewerTable(); VHM.SetInputData(CM.GetOutPut()); //VHM.IsDisplayValues = true; VHM.Title = "Correlation - " + cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate().GetName() + " (" + ListWellsToProcess.Count + " wells)"; VHM.Run(); DT.SetInputData(VHM.GetOutPut()); } DT.Run(); // DT.SetInputData(VT.GetOutPut()); //cDesignerColumn DC = new cDesignerColumn(); //DC.SetInputData(VHM.GetOutPut()); //DC.SetInputData(VT.GetOutPut()); //DC.Run(); //cDisplayDesigner DD = new cDisplayDesigner(); // DD.SetInputData(VHM.GetOutPut()); // DD.Run(); cDisplayToWindow vD = new cDisplayToWindow(); vD.SetInputData(DT.GetOutPut()); vD.Title = "Pearson Correlation"; vD.Run(); vD.Display(); //ComputeAndDisplayCorrelationMatrix(false, true, null); }
private void aNOVAToolStripMenuItem1_Click(object sender, EventArgs e) { cGUI_ListClasses GUI_ListClasses = new cGUI_ListClasses(); GUI_ListClasses.IsCheckBoxes = true; GUI_ListClasses.IsSelectAll = true; if (GUI_ListClasses.Run().IsSucceed == false) return; cExtendedTable ListClassSelected = GUI_ListClasses.GetOutPut(); string SubTitle = "ANOVA (One-Way)"; #region single plate and plate by plate cDesignerTab DT = new cDesignerTab(); if ((ProcessModeCurrentPlateOnlyToolStripMenuItem.Checked) || (ProcessModeplateByPlateToolStripMenuItem.Checked)/*||(ProcessModeEntireScreeningToolStripMenuItem.Checked)*/) { List<cPlate> ListPlatesToProcess = new List<cPlate>(); if ((ProcessModeplateByPlateToolStripMenuItem.Checked)/*||(ProcessModeEntireScreeningToolStripMenuItem.Checked)*/) { foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive) ListPlatesToProcess.Add(TmpPlate); } else ListPlatesToProcess.Add(cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate()); foreach (cPlate TmpPlate in ListPlatesToProcess) { cExtendedTable NewTable1 = new cExtendedTable(); List<cListWells> ListListWells = new List<cListWells>(); int NumWells = 0; for (int IdxClassWell = 0; IdxClassWell < ListClassSelected[0].Count; IdxClassWell++) { if (ListClassSelected[0][IdxClassWell] >= 1) { List<cWellClassType> LCT = new List<cWellClassType>(); LCT.Add(cGlobalInfo.ListWellClasses[IdxClassWell]); cListWells TmpList = TmpPlate.ListWells.Filter(LCT); if (TmpList.Count >= 3) { ListListWells.Add(TmpList); NumWells += TmpList.Count; } } } if (ListListWells.Count <= 1) { if (ProcessModeCurrentPlateOnlyToolStripMenuItem.Checked) { MessageBox.Show("Insufficient number of control wells", "Error", MessageBoxButtons.OK, MessageBoxIcon.Error); return; } else continue; } cExtendedTable CompleteReport = null; cExtendedList ListZ = new cExtendedList(); List<cDescriptorType> ListDescForZFactor = new List<cDescriptorType>(); List<string> ListNames = new List<string>(); int RealIdx = 0; for (int IDxDesc = 0; IDxDesc < cGlobalInfo.CurrentScreening.ListDescriptors.Count; IDxDesc++) { if (!cGlobalInfo.CurrentScreening.ListDescriptors[IDxDesc].IsActive()) continue; cExtendedTable TableForZ = new cExtendedTable(); foreach (var item in ListListWells) { List<cDescriptorType> LType = new List<cDescriptorType>(); LType.Add(cGlobalInfo.CurrentScreening.ListDescriptors[IDxDesc]); cExtendedTable TTable = item.GetAverageDescriptorValues(LType, false, false); TableForZ.Add(TTable[0]); } RealIdx++; cANOVA ZF = new cANOVA(); ZF.SetInputData(TableForZ); ZF.Run(); ListZ.Add(ZF.GetOutPut()[0][0]); ZF.GetOutPut()[0].Name = cGlobalInfo.CurrentScreening.ListDescriptors[IDxDesc].GetName(); if (CompleteReport == null) CompleteReport = new cExtendedTable(ZF.GetOutPut()); else { cMerge M = new cMerge(); M.IsHorizontal = true; M.SetInputData(CompleteReport, ZF.GetOutPut()); M.Run(); CompleteReport = M.GetOutPut(); } ListDescForZFactor.Add(cGlobalInfo.CurrentScreening.ListDescriptors[IDxDesc]); } cExtendedTable ET = new cExtendedTable(new cExtendedTable(ListZ)); ET[0].ListTags = new List<object>(); ET[0].ListTags.AddRange(ListDescForZFactor); ET.Name = TmpPlate.GetName() + "\n" + SubTitle + " - " + NumWells + " wells";// +" - " +cGlobalInfo.ListWellClasses[IdxClassNeg].Name + " (" + NewTable1[0].Count + " wells) vs. " +cGlobalInfo.ListWellClasses[IdxClassPos].Name + " (" + NewTable2[0].Count + " wells)"; ET[0].Name = ET.Name; cSort S = new cSort(); S.SetInputData(ET); S.IsAscending = false; S.ColumnIndexForSorting = 0; S.Run(); //ZFactorList.Sort(delegate(cSimpleSignature p1, cSimpleSignature p2) { return p1.AverageValue.CompareTo(p2.AverageValue); }); cViewerGraph1D VG1 = new cViewerGraph1D(); VG1.SetInputData(S.GetOutPut()); VG1.Chart.LabelAxisY = SubTitle; VG1.Chart.LabelAxisX = "Descriptor"; VG1.Chart.IsZoomableX = true; VG1.Chart.IsBar = true; VG1.Chart.IsBorder = true; VG1.Chart.IsDisplayValues = true; VG1.Chart.IsShadow = true; VG1.Chart.MarkerSize = 4; //VG1.Chart.Max VG1.Title = TmpPlate.GetName(); // Classes.Base_Classes.General.cLineHorizontalForGraph VLZ05 = new Classes.Base_Classes.General.cLineHorizontalForGraph(.05); // VLZ05.IsAllowMoving = true; // VG1.Chart.ListHorizontalLines.Add(VLZ05); VG1.Run(); cDesignerSplitter DS = new cDesignerSplitter(); DS.Orientation = Orientation.Vertical; DS.SetInputData(VG1.GetOutPut()); cTranspose T = new cTranspose(); T.SetInputData(CompleteReport); T.Run(); CompleteReport = T.GetOutPut(); CompleteReport[0].Name = "P-Value"; CompleteReport[1].Name = "Is significant ?"; cSort S1 = new cSort(); S1.SetInputData(CompleteReport); S1.ColumnIndexForSorting = 0; S1.IsAscending = true; S1.Run(); cViewerTable VT = new cViewerTable(); VT.SetInputData(S1.GetOutPut()); VT.DigitNumber = -1; VT.Run(); DS.SetInputData(VT.GetOutPut()); DS.Title = TmpPlate.GetName(); DS.Run(); DT.SetInputData(DS.GetOutPut()); } DT.Run(); cDisplayToWindow CDW = new cDisplayToWindow(); CDW.SetInputData(DT.GetOutPut());//VG1.GetOutPut()); if (ProcessModeCurrentPlateOnlyToolStripMenuItem.Checked) CDW.Title = SubTitle + " - " + ListPlatesToProcess[0].GetName(); else CDW.Title = SubTitle + " - " + ListPlatesToProcess.Count + " plates"; CDW.Run(); CDW.Display(); } #endregion #region entire screening else if (ProcessModeEntireScreeningToolStripMenuItem.Checked) { List<cPlate> ListPlatesToProcess = new List<cPlate>(); foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive) ListPlatesToProcess.Add(TmpPlate); cExtendedList ListZ = new cExtendedList(); List<cPlate> ListPlatesForZFactor = new List<cPlate>(); foreach (cPlate TmpPlate in ListPlatesToProcess) { cListWells ListWellsToProcess1 = new cListWells(null); cListWells ListWellsToProcess2 = new cListWells(null); foreach (cWell item in TmpPlate.ListActiveWells) { if (item.GetCurrentClassIdx() != -1) { if (ListClassSelected[0][item.GetCurrentClassIdx()] == 1) ListWellsToProcess1.Add(item); if (ListClassSelected[1][item.GetCurrentClassIdx()] == 1) ListWellsToProcess2.Add(item); } } cExtendedTable NewTable1 = new cExtendedTable(ListWellsToProcess1, cGlobalInfo.CurrentScreening.ListDescriptors.GetDescriptorIndex(cGlobalInfo.CurrentScreening.ListDescriptors.GetActiveDescriptor())); cExtendedTable NewTable2 = new cExtendedTable(ListWellsToProcess2, cGlobalInfo.CurrentScreening.ListDescriptors.GetDescriptorIndex(cGlobalInfo.CurrentScreening.ListDescriptors.GetActiveDescriptor())); //cExtendedTable NewTable2 = new cExtendedTable(ListWellsToProcess2, false); if ((NewTable1.Count == 0) || (NewTable1[0].Count < 2) || (NewTable2.Count == 0) || (NewTable2[0].Count < 2)) { if (ProcessModeCurrentPlateOnlyToolStripMenuItem.Checked) { MessageBox.Show("Insufficient number of control wells", "Error", MessageBoxButtons.OK, MessageBoxIcon.Error); return; } else continue; } cExtendedTable TableForZ = new cExtendedTable(); TableForZ.Add(NewTable1[0]); TableForZ.Add(NewTable2[0]); cStudent_tTest ZF = new cStudent_tTest(); ZF.SetInputData(TableForZ); ZF.Run(); double Zfactor = ZF.GetOutPut()[0][1]; ListZ.Add(Zfactor); // update plate quality //TmpPlate.ListProperties.UpdateValueByName("Quality", Math.Exp(Zfactor - 1)); //cProperty Prop = TmpPlate.ListProperties.FindByName("Quality"); //Prop.Info = ZF.GetInfo(); ListPlatesForZFactor.Add(TmpPlate); } cExtendedTable ET = new cExtendedTable(new cExtendedTable(ListZ)); ET[0].ListTags = new List<object>(); ET[0].ListTags.AddRange(ListPlatesForZFactor); ET.Name = SubTitle + " - " + cGlobalInfo.CurrentScreening.ListDescriptors[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetName();// +" - " +cGlobalInfo.ListWellClasses[IdxClassNeg].Name + /*" (" + NewTable1[0].Count + " wells)*/ " vs. " +cGlobalInfo.ListWellClasses[IdxClassPos].Name;// +" (" + NewTable2[0].Count + " wells)"; ET[0].Name = ET.Name; cViewerGraph1D VG1 = new cViewerGraph1D(); VG1.SetInputData(ET); VG1.Chart.LabelAxisY = SubTitle; VG1.Chart.LabelAxisX = "Plate"; VG1.Chart.IsZoomableX = true; VG1.Chart.IsBar = true; VG1.Chart.IsBorder = true; VG1.Chart.IsDisplayValues = true; VG1.Chart.IsShadow = true; VG1.Chart.MarkerSize = 4; VG1.Title = cGlobalInfo.CurrentScreening.ListDescriptors[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetName(); VG1.Run(); cDisplayToWindow CDW = new cDisplayToWindow(); CDW.SetInputData(VG1.GetOutPut()); CDW.Title = SubTitle + " - " + ListPlatesToProcess.Count + " plates"; CDW.Run(); CDW.Display(); #endregion } }
private void stackedHistogramsToolStripMenuItem_Click(object sender, EventArgs e) { cGUI_ListClasses GUI_ListClasses = new cGUI_ListClasses(); GUI_ListClasses.IsCheckBoxes = true; GUI_ListClasses.IsSelectAll = true; if (GUI_ListClasses.Run().IsSucceed == false) return; cExtendedList ListClassSelected = GUI_ListClasses.GetOutPut()[0]; if (ListClassSelected.Sum() < 1) { MessageBox.Show("At least one classe has to be selected.", "Error !", MessageBoxButtons.OK, MessageBoxIcon.Error); return; } cDisplayToWindow CDW1 = new cDisplayToWindow(); if ((ProcessModeCurrentPlateOnlyToolStripMenuItem.Checked) || (ProcessModeEntireScreeningToolStripMenuItem.Checked)) { cListWells ListWellsToProcess = new cListWells(null); List<cPlate> PlateList = new List<cPlate>(); if (ProcessModeCurrentPlateOnlyToolStripMenuItem.Checked) PlateList.Add(cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate()); else { foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive) PlateList.Add(TmpPlate); } foreach (cPlate TmpPlate in PlateList) foreach (cWell item in TmpPlate.ListActiveWells) if ((item.GetCurrentClassIdx() != -1) && (ListClassSelected[item.GetCurrentClassIdx()] == 1)) ListWellsToProcess.Add(item); if (ProcessModeCurrentPlateOnlyToolStripMenuItem.Checked) CDW1.Title = cGlobalInfo.CurrentScreening.ListDescriptors[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetName() + " - Stacked Histogram (" + PlateList[0].GetName() + ")"; else CDW1.Title = cGlobalInfo.CurrentScreening.ListDescriptors[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetName() + " - Stacked Histogram - " + PlateList.Count + " plates"; cExtendedTable NewTable = ListWellsToProcess.GetAverageDescriptorValues(cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx); NewTable.Name = CDW1.Title; cViewerStackedHistogram CV1 = new cViewerStackedHistogram(); CV1.SetInputData(NewTable); CV1.Chart.LabelAxisX = cGlobalInfo.CurrentScreening.ListDescriptors[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetName(); CV1.Run(); CDW1.SetInputData(CV1.GetOutPut()); } else if (ProcessModeplateByPlateToolStripMenuItem.Checked) { cDesignerTab CDT = new cDesignerTab(); foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive) { cListWells ListWellsToProcess = new cListWells(null); foreach (cWell item in TmpPlate.ListActiveWells) if ((item.GetCurrentClassIdx() != -1) && (ListClassSelected[item.GetCurrentClassIdx()] == 1)) ListWellsToProcess.Add(item); cExtendedTable NewTable = ListWellsToProcess.GetAverageDescriptorValues(cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx); NewTable.Name = cGlobalInfo.CurrentScreening.ListDescriptors[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetName() + " - " + TmpPlate.GetName(); cViewerStackedHistogram CV1 = new cViewerStackedHistogram(); CV1.SetInputData(NewTable); CV1.Chart.LabelAxisX = cGlobalInfo.CurrentScreening.ListDescriptors[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetName(); CV1.Title = TmpPlate.GetName(); CV1.Run(); CDT.SetInputData(CV1.GetOutPut()); } CDT.Run(); CDW1.SetInputData(CDT.GetOutPut()); CDW1.Title = "Stacked Histogram - " + cGlobalInfo.CurrentScreening.ListPlatesActive.Count + " plates"; } CDW1.Run(); CDW1.Display(); }
private void dToolStripMenuItem1_Click(object sender, EventArgs e) { cFeedBackMessage MessageReturned; cViewer2DScatterPoint V1D = new cViewer2DScatterPoint(); V1D.Chart.IsSelectable = true; //V1D.Chart.LabelAxisX = "Well Index"; //V1D.Chart.LabelAxisY = CompleteScreening.ListDescriptors[CompleteScreening.ListDescriptors.CurrentSelectedDescriptor].GetName(); //V1D.Chart.BackgroundColor = Color.LightYellow; //V1D.Chart.IsXAxis = true; cGUI_ListClasses GUI_ListClasses = new cGUI_ListClasses(); GUI_ListClasses.IsCheckBoxes = true; GUI_ListClasses.IsSelectAll = true; if (GUI_ListClasses.Run().IsSucceed == false) return; cExtendedList ListClassSelected = GUI_ListClasses.GetOutPut()[0]; if (ListClassSelected.Sum() < 1) { MessageBox.Show("At least one classe has to be selected.", "Error !", MessageBoxButtons.OK, MessageBoxIcon.Error); return; } //cDisplayToWindow CDW1 = new cDisplayToWindow(); // cListWell ListWellsToProcess = new cListWell(); if (ProcessModeCurrentPlateOnlyToolStripMenuItem.Checked) { //cExtendedTable DataFromPlate = new cExtendedTable(CompleteScreening.GetCurrentDisplayPlate().ListActiveWells, // CompleteScreening.ListDescriptors.CurrentSelectedDescriptor); cListWells ListWellsToProcess = new cListWells(null); //foreach (cPlate TmpPlate in CompleteScreening.ListPlatesActive) foreach (cWell item in cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate().ListActiveWells) if (item.GetCurrentClassIdx() != -1) if (ListClassSelected[item.GetCurrentClassIdx()] == 1) ListWellsToProcess.Add(item); cExtendedTable DataFromPlate = new cExtendedTable(ListWellsToProcess, true); DataFromPlate.Name = cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate().GetName(); V1D.Chart.IsShadow = true; V1D.Chart.IsBorder = true; V1D.Chart.IsSelectable = true; V1D.Chart.CurrentTitle.Tag = cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate(); V1D.SetInputData(DataFromPlate); MessageReturned = V1D.Run(); if (MessageReturned.IsSucceed == false) { MessageBox.Show(MessageReturned.Message, "Error", MessageBoxButtons.OK, MessageBoxIcon.Error); return; } cDesignerSinglePanel Designer0 = new cDesignerSinglePanel(); Designer0.SetInputData(V1D.GetOutPut()); Designer0.Run(); cDisplayToWindow Disp0 = new cDisplayToWindow(); Disp0.SetInputData(Designer0.GetOutPut()); Disp0.Title = "2D Scatter points graph - " + DataFromPlate[0].Count + " wells."; if (!Disp0.Run().IsSucceed) return; Disp0.Display(); } else if (ProcessModeEntireScreeningToolStripMenuItem.Checked) { V1D.Chart.MarkerSize = 5; V1D.Chart.IsBorder = false; //List<cWell> ListWell = new List<cWell>(); //foreach (cPlate TmpPlate in CompleteScreening.ListPlatesActive) // foreach (cWell TmpWell in TmpPlate.ListActiveWells) // ListWell.Add(TmpWell); //cExtendedTable DataFromPlate = new cExtendedTable(ListWell, // CompleteScreening.ListDescriptors.CurrentSelectedDescriptor); cListWells ListWellsToProcess = new cListWells(null); foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive) foreach (cWell item in TmpPlate.ListActiveWells) if (item.GetCurrentClassIdx() != -1) if (ListClassSelected[item.GetCurrentClassIdx()] == 1) ListWellsToProcess.Add(item); cExtendedTable DataFromPlate = new cExtendedTable(ListWellsToProcess, true); DataFromPlate.Name = cGlobalInfo.CurrentScreening.GetName() + " - " + cGlobalInfo.CurrentScreening.ListPlatesActive.Count + " plates"; V1D.SetInputData(DataFromPlate); V1D.Run(); cDesignerSinglePanel Designer0 = new cDesignerSinglePanel(); Designer0.SetInputData(V1D.GetOutPut()); Designer0.Run(); cDisplayToWindow Disp0 = new cDisplayToWindow(); Disp0.SetInputData(Designer0.GetOutPut()); Disp0.Title = "2D Scatter points graph - " + DataFromPlate[0].Count + " wells."; if (!Disp0.Run().IsSucceed) return; Disp0.Display(); //dislin.metafl("xwin"); //dislin.disini(); //dislin.name("X-axis", "X"); //dislin.name("Y-axis", "Y"); //dislin.title(); //dislin.axslen(1000, 1000); ////dislin.graf(0.0, 1.0, 0.0, 0.1, 0.0, 1.0, 0.0, 0.1); ////dislin.crvmat(func, n, n, 1, 1); //dislin.disfin(); } else if (ProcessModeplateByPlateToolStripMenuItem.Checked) { cDesignerTab CDT = new cDesignerTab(); foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive) { //cExtendedTable DataFromPlate = new cExtendedTable(TmpPlate.ListActiveWells, // CompleteScreening.ListDescriptors.CurrentSelectedDescriptor); cListWells ListWellsToProcess = new cListWells(null); foreach (cWell item in TmpPlate.ListActiveWells) if (item.GetCurrentClassIdx() != -1) if (ListClassSelected[item.GetCurrentClassIdx()] == 1) ListWellsToProcess.Add(item); cExtendedTable DataFromPlate = new cExtendedTable(ListWellsToProcess, true); DataFromPlate.Name = TmpPlate.GetName(); V1D = new cViewer2DScatterPoint(); V1D.Chart.IsSelectable = true; V1D.Chart.LabelAxisX = "Well Index"; V1D.Chart.LabelAxisY = cGlobalInfo.CurrentScreening.ListDescriptors[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetName(); V1D.Chart.BackgroundColor = Color.LightYellow; V1D.Chart.IsXGrid = true; V1D.Chart.CurrentTitle.Tag = TmpPlate; V1D.SetInputData(DataFromPlate); V1D.Title = TmpPlate.GetName(); V1D.Run(); CDT.SetInputData(V1D.GetOutPut()); } CDT.Run(); cDisplayToWindow Disp0 = new cDisplayToWindow(); Disp0.SetInputData(CDT.GetOutPut()); Disp0.Title = "2D Scatter points graphs"; if (!Disp0.Run().IsSucceed) return; Disp0.Display(); } //if (CompleteScreening == null) return; //SimpleFormForXY FormToDisplayXY = new SimpleFormForXY(false); //FormToDisplayXY.CompleteScreening = CompleteScreening; //for (int i = 0; i < (int)CompleteScreening.ListDescriptors.Count; i++) //{ // FormToDisplayXY.comboBoxDescriptorX.Items.Add(CompleteScreening.ListDescriptors[i].GetName()); // FormToDisplayXY.comboBoxDescriptorY.Items.Add(CompleteScreening.ListDescriptors[i].GetName()); //} //FormToDisplayXY.comboBoxDescriptorX.SelectedIndex = 0; //FormToDisplayXY.comboBoxDescriptorY.SelectedIndex = 0; //FormToDisplayXY.DisplayXY(); //FormToDisplayXY.ShowDialog(); //return; }
private void ToolStripMenuItem_CopyWellsToList(object sender, EventArgs e) { cGUI_ListClasses GUIListClasses = new cGUI_ListClasses(); GUIListClasses.IsCheckBoxes = true; if (GUIListClasses.Run().IsSucceed == false) return; cExtendedTable ListClassSelected = GUIListClasses.GetOutPut(); foreach (cWell TmpWell in this.ListActiveWells) { if ((TmpWell.GetCurrentClassIdx() < 0) || (TmpWell.GetCurrentClassIdx() >= cGlobalInfo.ListWellClasses.Count)) continue; if ((int)ListClassSelected[0][TmpWell.GetCurrentClassIdx()] == 1) { TmpWell.AddToListWellsGUI(); } } }