コード例 #1
0
ファイル: MapRecord.cs プロジェクト: anmayam/GlycoFragwork
 public void ReadInMLNFile(string filename, int _numdatasets)
 {
     // Read in MultiAlign file
     // Note : sep 26, 2011 - This will need to be updated when the new MLN format comes out
     CSVFileHandler CsvFileHandler2 = new CSVFileHandler(filename, CSVFileHandler.READ_ONLY);
     CsvFileHandler2.openFile();
     String[] Attributes2;
     CsvFileHandler2.readLine();
     while ((Attributes2 = CsvFileHandler2.readLine()) != null)
     {
         MultiAlignRecord mrecord = new MultiAlignRecord();
         mrecord.ID = int.Parse(Attributes2[0]);
         mrecord.Size = int.Parse(Attributes2[1]);
         mrecord.Mass = double.Parse(Attributes2[2]);
         mrecord.NET = double.Parse(Attributes2[3]);
         mrecord.AllocateNumberDatasets(_numdatasets);
         int n_dataset = 0;
         for (int i = 4; i < Attributes2.Length; i += 4)
         {
             UMCRecord u = new UMCRecord();
             if (Attributes2[i] != "")
             {
                 u.ScanRep = int.Parse(Attributes2[i]);
                 u.Abundance = double.Parse(Attributes2[i + 1]);
                 u.ScanStart = int.Parse(Attributes2[i + 2]);
                 u.ScanEnd = int.Parse(Attributes2[i + 3]);
             }
             mrecord._AssociatedUMCRecords.Add(u);
             n_dataset++;
         }
         AddRecord(mrecord);
     }
 }
コード例 #2
0
ファイル: MapRecord.cs プロジェクト: anmayam/GlycoFragwork
        public void ReanInMLNV2File(string filename, int _numdatasets)
        {
            // Read in new version of MLN file
            CSVFileHandler CsvFileHandler2 = new CSVFileHandler(filename, CSVFileHandler.READ_ONLY);
            CsvFileHandler2.openFile();
            String[] Attributes2;
            CsvFileHandler2.readLine();
            while ((Attributes2 = CsvFileHandler2.readLine()) != null)
            {
                MultiAlignRecord mrecord = new MultiAlignRecord();
                mrecord.ID = int.Parse(Attributes2[0]);

                mrecord.Mass = double.Parse(Attributes2[1]);
                mrecord.NET = double.Parse(Attributes2[2]);
                int numDatasetsToAllocate = 0;

                if (mrecord.Mass < _MAP_MIN_MASS)
                    _MAP_MIN_MASS = mrecord.Mass;
                if (mrecord.Mass > _MAP_MAX_MASS)
                    _MAP_MAX_MASS = mrecord.Mass;

                if ((Attributes2.Length-5) / 8 != _numdatasets)
                    numDatasetsToAllocate = (Attributes2.Length -5) / 8;
                else
                    numDatasetsToAllocate = _numdatasets;

                mrecord.AllocateNumberDatasets(numDatasetsToAllocate);
                for (int i = 5; i < Attributes2.Length; i += 8)
                {
                    UMCRecord u = new UMCRecord();
                    if (Attributes2[i] != "")
                    {
                        u.ID = int.Parse(Attributes2[i]);
                        u.DatasetID = int.Parse(Attributes2[i + 1]);
                        u.MW = double.Parse(Attributes2[i + 2]);
                        u.Abundance = double.Parse(Attributes2[i + 4]);
                        u.ScanRep = int.Parse(Attributes2[i + 5]);
                        u.ScanStart = int.Parse(Attributes2[i + 6]);
                        u.ScanEnd = int.Parse(Attributes2[i + 7]);
                        mrecord._AssociatedUMCRecords.Add(u);
                    }
                }
                AddRecord(mrecord);
                if (mrecord._AssociatedUMCRecords.Count > 10)
                {
                    bool debig = true;
                }
            }
        }