public static void MakeMethySpatialDepthCov()
{
try
{
Dictionary <string, List <List <double> > > tdict = Genome.GetAllSingleSpatialDepthCoverages();
UpdateLog("Making Distributions..", true);
MultiBayes mBayes = new MultiBayes(tdict, ModelDisplayType.Line, MultiBayesLayout.Stacked);
PlotModel model = new PlotModel {
Title = "Global spatial distribution of read-depth across element(s)"
};
LinearAxis axX = new LinearAxis(AxisPosition.Bottom, 0, mBayes.GetXPercentLimit(1) + 1, "Normalised division of element");
LinearAxis axY = new LinearAxis(AxisPosition.Left, 0, mBayes.GetYPercentLimit(1), "Odds ratio of read coverage-depth for element vs background");
model.TitlePadding = 10;
axX.AxisTitleDistance = 10;
axY.AxisTitleDistance = 10;
model.Axes.Add(axX);
model.Axes.Add(axY);
mBayes.AddToModel(model);
model.IsLegendVisible = true;
MainWindow.InsertGraph(GraphWindow.Meth, model, mBayes);
UpdateLog("Made a spatial-depth-coverage graph in the Methylation tab.", true);
ProgramState.MadeMethGraph = true;
}
catch (Exception e) {
ShowMessageWindow(e.Message, true);
}
}
public static void MakeMultiBayesRankGraph(Dictionary <string, List <List <double> > > data, GraphWindow grWind,
string xLab, string yLab, string title, RSplitContainer <List <double> > rsc, bool mergeOld)
{
try
{
UpdateLog("Making Odds ratios..", true);
MultiBayes.FlipFullDictionary(data);
MultiBayes mBayes = new MultiBayes(data, ModelDisplayType.Line, MultiBayesLayout.Stacked);
PlotModel model = new PlotModel {
Title = title
};
LinearAxis axX = new LinearAxis(AxisPosition.Bottom, 0, mBayes.GetXPercentLimit(1) + 1, xLab);
LinearAxis axY = new LinearAxis(AxisPosition.Left, 0, mBayes.GetYPercentLimit(1), yLab);
model.TitlePadding = 10;
axX.AxisTitleDistance = 10;
axY.AxisTitleDistance = 10;
model.Axes.Add(axX);
model.Axes.Add(axY);
mBayes.AddToModel(model);
if (mergeOld && RSPToMergeSeries != null)
{
foreach (Series sr in RSPToMergeSeries)
{
model.Series.Add(sr);
}
}
else
{
if (RSPToMergeSeries != null)
{
RSPToMergeSeries.Clear();
}
}
RSPToMergeSeries.AddRange(mBayes.GetNextSeries(title.Split(' ')[0]));
model.IsLegendVisible = true;
MainWindow.InsertGraph(grWind, model, mBayes);
MainWindow.SetRSplitDoubleContainer(rsc);
UpdateLog("Made a Spatial Rank/Split graph...", true);
ProgramState.MadeGlobalGraph = true;
}
catch (Exception e) {
ShowMessageWindow(e.Message, true);
}
}