/// <summary>
///
/// </summary>
/// <param name="aEvent"></param>
/// <returns></returns>
public string getEventID(EventStruct aEvent)
{
if (this.Model.Level == 1)
return "Process:/:" + aEvent.Name;
else if (this.Model.Level == 2)
return "Process:/:" + aEvent.ID;
else
{
string anID = "Process:/:Event" + this.EventNumber;
this.EventNumber = this.EventNumber + 1;
return anID;
}
}
public void TestConstructorOfStructs()
{
//
CompartmentStruct c = new CompartmentStruct(
"ID",
"Name",
0,
0.0,
0.0,
"Unit",
"Parent",
false);
//
EventStruct e = new EventStruct(
"ID",
"Name",
"Trigger",
"delay",
"TimeUnit",
new List<EventAssignmentStruct>());
//
EventAssignmentStruct ea = new EventAssignmentStruct(
"Variable",
"Formula");
//
FunctionDefinitionStruct fd = new FunctionDefinitionStruct(
"ID",
"Name",
"Formula");
//
ParameterStruct p = new ParameterStruct(
"ID",
"Name",
0.0,
"Unit",
false);
//
ReactionStruct r = new ReactionStruct(
"ID",
"Name",
new List<KineticLawStruct>(),
false,
false,
new List<ReactantStruct>(),
new List<ProductStruct>(),
new List<string>());
//
KineticLawStruct k = new KineticLawStruct(
"Formula",
new List<string>(),
"TimeUnit",
"Substance",
new List<ParameterStruct>(),
null);
//
ReactantStruct rs = new ReactantStruct(
"Species",
0,
"Formula",
0);
//
ProductStruct ps = new ProductStruct(
"Species",
0.0,
"Formula",
0);
//
RuleStruct rule = new RuleStruct(
0,
"Formula",
"Variable");
//
SpeciesStruct s = new SpeciesStruct(
"ID",
"Name",
"Parent",
0.0,
0.0,
"Substance",
"Spatial",
"Unit",
false,
false,
0,
false);
//
UnitDefinitionStruct ud = new UnitDefinitionStruct(
"ID",
"Name",
new List<UnitStruct>());
//
UnitStruct u = new UnitStruct(
"Kind",
0,
0,
0.0,
0.0);
//
VariableReferenceStruct v = new VariableReferenceStruct(
"Name",
"Variable",
0);
//
InitialAssignmentStruct i = new InitialAssignmentStruct(
"Name",
0.0);
}
/// <summary>
/// [ EventStruct ]
/// [[ Id , Name , StringTrigger , StringDelay , TimeUnit , [[ VariableAssignment , StringAssignment ]] ]]
/// </summary>
/// <param name="aSBMLmodel"></param>
/// <returns></returns>
public static List<EventStruct> getEvent(Model aSBMLmodel)
{
List<EventStruct> list = new List<EventStruct>();
ListOfEvents events = aSBMLmodel.getListOfEvents();
for (int i = 0; i < events.size(); i++ )
{
Event anEvent = aSBMLmodel.getEvent(i);
string anId_Ev = anEvent.getId();
string aName_Ev = anEvent.getName();
Trigger anASTNode_Ev_Tr = anEvent.getTrigger();
string aString_Ev_Tr = libsbml.libsbml.formulaToString(anASTNode_Ev_Tr.getMath());
Delay anASTNode_Ev_De = anEvent.getDelay();
string aString_Ev_De = libsbml.libsbml.formulaToString(anASTNode_Ev_Tr.getMath());
string aTimeUnit_Ev = anEvent.getTimeUnits();
List<EventAssignmentStruct> listOfEventAssignments = new List<EventAssignmentStruct>();
ListOfEventAssignments assignments = anEvent.getListOfEventAssignments();
for (int j = 0; j < assignments.size(); j++ )
{
EventAssignment anEventAssignment = anEvent.getEventAssignment(j);
string aVariable_Ev_As = anEventAssignment.getVariable();
ASTNode anASTNode_Ev_As = anEventAssignment.getMath();
string aString_Ev_As = libsbml.libsbml.formulaToString(anASTNode_Ev_As);
EventAssignmentStruct listOfEventAssignment = new EventAssignmentStruct(
aVariable_Ev_As,
aString_Ev_As);
listOfEventAssignments.Add(listOfEventAssignment);
}
EventStruct eventStruct = new EventStruct(
anId_Ev,
aName_Ev,
aString_Ev_Tr,
aString_Ev_De,
aTimeUnit_Ev,
listOfEventAssignments);
list.Add(eventStruct);
}
return list;
}
public void TestSBML_Event()
{
SBMLReader reader = new SBMLReader();
SBMLDocument document = reader.readSBML(TestConstant.SBML_Oscillation);
SBML_Model model = new SBML_Model(document.getModel());
SBML_Event e = new SBML_Event(model);
EventStruct es = new EventStruct();
es.ID = "Test1";
string id = e.getEventID(es);
Assert.AreEqual("Process:/:Test1", id, "getEventID returns unexpected value.");
model.Level = 1;
es.Name = "Test2";
id = e.getEventID(es);
Assert.AreEqual("Process:/:Test2", id, "getEventID returns unexpected value.");
model.Level = 0;
id = e.getEventID(es);
Assert.AreEqual("Process:/:Event0", id, "getEventID returns unexpected value.");
}