public virtual FileMetaInfo NewFileMetaInfo(DataSet ds, String transferSyntaxUID)
{
try {
return new FileMetaInfo().Init(ds.GetString(Tags.SOPClassUniqueId, null),
ds.GetString(Tags.SOPInstanceUniqueId, null), transferSyntaxUID,
Implementation.ClassUID, Implementation.VersionName);
}
catch (DcmValueException ex) {
throw new ArgumentException(ex.Message);
}
}
public override void AddItem(DataSet item)
{
m_list.Add(item);
}
/// <summary>
/// Creates a new instance of ElementImpl
/// </summary>
public SQElement(uint tag, DataSet parent)
: base(tag)
{
this.parent = parent;
}
public FileDataSource(DcmParser parser, DataSet dataSet, byte[] buffer)
{
_parser = parser;
_dataSet = dataSet;
_buffer = buffer;
}
/// <summary>
/// Send C-FIND to find the series for the studies
/// <param name="studiesInstanceUniqueIds">The studies' instance UniqueIds</param>
/// </summary>
public IList<DataSet> CFindSeriesForStudies(IEnumerable<string> studiesInstanceUniqueIds)
{
var dataset = new DataSet();
const string sopClassUniqueId = UIDs.StudyRootQueryRetrieveInformationModelFIND;
dataset.FileMetaInfo = GenerateFileMetaInfo(sopClassUniqueId);
dataset.PutCS(Tags.QueryRetrieveLevel, "SERIES");
dataset.PutCS(Tags.Modality);
dataset.PutUI(Tags.StudyInstanceUniqueId, studiesInstanceUniqueIds.ToArray());
dataset.PutUI(Tags.SeriesInstanceUniqueId);
dataset.PutIS(Tags.SeriesNumber);
dataset.PutDA(Tags.SeriesDate);
dataset.PutTM(Tags.SeriesTime);
dataset.PutLO(Tags.SeriesDescription);
return studiesInstanceUniqueIds != null && studiesInstanceUniqueIds.Any() ? RetrieveDatasetsFromServiceClassProvider(dataset, sopClassUniqueId) : new List<DataSet>();
}
public DataSet(DataSet parentDataSet)
{
this._parentDataSet = parentDataSet;
}
private void CMoveDataSet(DataSet dataset, string applicationEntityDestination)
{
int pcid = _presentationContextIdStart;
_presentationContextIdStart += 2;
IActiveAssociation activeAssociation = null;
try
{
const string sopClassUniqueId = UIDs.StudyRootQueryRetrieveInformationModelMOVE;
_aAssociateRequest.AddPresContext(_associationFactory.NewPresContext(pcid, sopClassUniqueId, DefinedTransferSyntaxes));
activeAssociation = OpenAssociation();
if (activeAssociation != null)
{
IAssociation association = activeAssociation.Association;
if (association.GetAcceptedPresContext(sopClassUniqueId, TransferSyntaxUniqueId) == null)
{
Logger.Error(SOP_CLASS_UNIQUEID_NOT_SUPPORTED);
}
else
{
string message = String.Format("CMove from {0} @ {1} {2}:{3} to {4}", _aAssociateRequest.Name, _aAssociateRequest.ApplicationEntityTitle, _hostName, _port, applicationEntityDestination);
Logger.Info(message);
IDicomCommand dicomCommand = _dcmObjectFactory.NewCommand();
IDicomCommand cMoveRequest = dicomCommand.InitCMoveRQ(association.NextMsgID(), sopClassUniqueId, Priority.HIGH, applicationEntityDestination);
IDimse dimseRequest = _associationFactory.NewDimse(pcid, cMoveRequest, dataset);
FutureDimseResponse dimseResponse = activeAssociation.Invoke(dimseRequest);
while (!dimseResponse.IsReady())
{
Thread.Sleep(0);
}
Logger.Info("Finished CMOVE");
}
}
}
finally
{
if (activeAssociation != null)
{
activeAssociation.Release(false);
}
_aAssociateRequest.RemovePresentationContext(pcid);
}
}
private FileInfo ToFile(DataSet ds)
{
String studyInstanceUniqueId = null;
try {
studyInstanceUniqueId = ds.GetString(Tags.StudyInstanceUniqueId);
if (studyInstanceUniqueId == null) {
throw new DcmServiceException(MISSING_UID, "Missing Study Instance UID");
}
if (ds.Vm(Tags.SeriesInstanceUniqueId) <= 0) {
throw new DcmServiceException(MISSING_UID, "Missing Series Instance UID");
}
String instanceUniqueId = ds.GetString(Tags.SOPInstanceUniqueId);
if (instanceUniqueId == null) {
throw new DcmServiceException(MISSING_UID, "Missing SOP Instance UID");
}
String classUniqueId = ds.GetString(Tags.SOPClassUniqueId);
if (classUniqueId == null) {
throw new DcmServiceException(MISSING_UID, "Missing SOP Class UID");
}
if (!instanceUniqueId.Equals(ds.FileMetaInfo.MediaStorageSOPInstanceUniqueId)) {
throw new DcmServiceException(MISMATCH_UID,
"SOP Instance UID in DataSet differs from Affected SOP Instance UID");
}
if (!classUniqueId.Equals(ds.FileMetaInfo.MediaStorageSOPClassUniqueId)) {
throw new DcmServiceException(MISMATCH_UID,
"SOP Class UID in DataSet differs from Affected SOP Class UID");
}
}
catch (DcmValueException e) {
throw new DcmServiceException(CANNOT_UNDERSTAND, e);
}
String pn = ToFileID(ds, Tags.PatientName) + "____";
FileInfo dir = _archiveDirectory;
for (int i = 0; i < dirSplitLevel; ++i) {
dir = new FileInfo(dir.FullName + "\\" + pn.Substring(0, (i + 1) - (0)));
}
dir = new FileInfo(dir.FullName + "\\" + studyInstanceUniqueId);
dir = new FileInfo(dir.FullName + "\\" + ToFileID(ds, Tags.SeriesNumber));
var file = new FileInfo(dir.FullName + "\\" + ToFileID(ds, Tags.InstanceNumber) + ".dcm");
return file;
}
/// <summary>
/// Send C-STORE
/// </summary>
/// <param name="dataSet"></param>
public bool CStore(DataSet dataSet)
{
int pcid = _presentationContextIdStart;
_presentationContextIdStart += 2;
IActiveAssociation active = null;
try
{
//
// Prepare association
//
String classUniqueId = dataSet.GetString(Tags.SOPClassUniqueId);
String tsUniqueId = dataSet.GetString(Tags.TransferSyntaxUniqueId);
if (string.IsNullOrEmpty(tsUniqueId) && (dataSet.FileMetaInfo != null))
{
tsUniqueId = dataSet.FileMetaInfo.GetString(Tags.TransferSyntaxUniqueId);
}
if (string.IsNullOrEmpty(tsUniqueId))
{
tsUniqueId = UIDs.ImplicitVRLittleEndian;
}
_aAssociateRequest.AddPresContext(_associationFactory.NewPresContext(pcid, classUniqueId, new[] { tsUniqueId }));
active = OpenAssociation();
if (active != null)
{
bool bResponse = false;
FutureDimseResponse frsp = SendDataset(active, null, dataSet);
if (frsp != null)
{
active.WaitOnResponse();
bResponse = true;
}
return bResponse;
}
}
finally
{
if (active != null)
{
active.Release(true);
}
_aAssociateRequest.RemovePresentationContext(pcid);
}
return false;
}
private static void LogDataSetValues(DataSet seriesDataSets)
{
if (seriesDataSets == null)
{
return;
}
Logger.Info(seriesDataSets.GetElementsAsString());
}
/// <summary>
/// Send C-GET
/// <param name="studyInstanceUniqueId">A study instance UniqueId</param>
/// <param name="seriesInstanceUniqueId">A series instance UniqueId</param>
/// <param name="sopInstanceUniqueId">A sop instance instance UniqueId</param>
/// </summary>
public IList<DataSet> CGet(string studyInstanceUniqueId, string seriesInstanceUniqueId, string sopInstanceUniqueId)
{
if ((studyInstanceUniqueId == null) && (seriesInstanceUniqueId == null) && (sopInstanceUniqueId == null))
{
return null;
}
int pcid = _presentationContextIdStart;
_presentationContextIdStart += 2;
var datasets = new List<DataSet>();
IActiveAssociation active = null;
try
{
string sopClassUniqueId = UIDs.StudyRootQueryRetrieveInformationModelGET;
_aAssociateRequest.AddPresContext(_associationFactory.NewPresContext(pcid, sopClassUniqueId, DefinedTransferSyntaxes));
active = OpenAssociation();
if (active != null)
{
var dataset = new DataSet();
dataset.FileMetaInfo = GenerateFileMetaInfo(sopClassUniqueId);
dataset.PutUI(Tags.StudyInstanceUniqueId, studyInstanceUniqueId);
dataset.PutUI(Tags.SeriesInstanceUniqueId, seriesInstanceUniqueId);
dataset.PutUI(Tags.SOPInstanceUniqueId, sopInstanceUniqueId);
IAssociation association = active.Association;
if ((association.GetAcceptedPresContext(sopClassUniqueId, TransferSyntaxUniqueId)) == null)
{
Logger.Error(SOP_CLASS_UNIQUEID_NOT_SUPPORTED);
return null;
}
DicomCommand cGetDicomCommand = _dcmObjectFactory.NewCommand().InitCGetRQ(association.NextMsgID(), sopClassUniqueId, Priority.HIGH);
IDimse dimseRequest = _associationFactory.NewDimse(pcid, cGetDicomCommand, dataset);
FutureDimseResponse dimseResponse = active.Invoke(dimseRequest);
while (!dimseResponse.IsReady())
{
Thread.Sleep(0);
}
datasets.AddRange(dimseResponse.ListPending().Select(dimse => dimse.DataSet));
_aAssociateRequest.RemovePresentationContext(pcid);
}
}
finally
{
if (active != null)
{
active.Release(true);
}
_aAssociateRequest.RemovePresentationContext(pcid);
}
return datasets;
}
/// <summary>
/// Find all the studies for a specific patient
/// <param name="patientId">The id of the patient</param>
/// <param name="patientName">The name of the patient</param>
/// </summary>
public IList<DataSet> CFindStudy(string patientId, string patientName)
{
string queryKey = _aAssociateRequest.ApplicationEntityTitle + _port + _hostName + patientId + patientName;
if (_cacheManager.ContainsKey(queryKey))
{
return _cacheManager[queryKey];
}
const string sopClassUniqueId = UIDs.StudyRootQueryRetrieveInformationModelFIND;
var dataset = new DataSet();
dataset.FileMetaInfo = GenerateFileMetaInfo(sopClassUniqueId);
dataset.PutDA(Tags.StudyDate);
dataset.PutTM(Tags.StudyTime);
dataset.PutSH(Tags.AccessionNumber);
dataset.PutCS(Tags.QueryRetrieveLevel, "STUDY");
dataset.PutCS(Tags.ModalitiesInStudy);
dataset.PutLO(Tags.InstitutionName);
dataset.PutPN(Tags.PerformingPhysicianName);
dataset.PutPN(Tags.ReferringPhysicianName);
dataset.PutLO(Tags.StudyDescription);
dataset.PutPN(Tags.PatientName, patientName);
dataset.PutLO(Tags.PatientID, patientId);
dataset.PutDA(Tags.PatientBirthDate);
dataset.PutCS(Tags.PatientSex);
dataset.PutAS(Tags.PatientAge);
dataset.PutUI(Tags.StudyInstanceUniqueId);
dataset.PutSH(Tags.StudyID);
List<DataSet> datasets = RetrieveDatasetsFromServiceClassProvider(dataset, sopClassUniqueId);
if (datasets.Any())
{
_cacheManager.Add(queryKey, datasets);
}
return datasets;
}
/// <summary>
/// Find all the studies for the studies Instance UniqueIds
/// <param name="studyInstanceUniqueIds">The studies' instance UniqueIds</param>
/// </summary>
public IList<DataSet> CFindStudies(IEnumerable<string> studyInstanceUniqueIds)
{
const string sopClassUniqueId = UIDs.StudyRootQueryRetrieveInformationModelFIND;
var dataset = new DataSet();
dataset.FileMetaInfo = GenerateFileMetaInfo(sopClassUniqueId);
dataset.PutDA(Tags.StudyDate);
dataset.PutTM(Tags.StudyTime);
dataset.PutSH(Tags.AccessionNumber);
dataset.PutCS(Tags.QueryRetrieveLevel, "STUDY");
dataset.PutCS(Tags.ModalitiesInStudy);
dataset.PutLO(Tags.InstitutionName);
dataset.PutPN(Tags.ReferringPhysicianName);
dataset.PutLO(Tags.StudyDescription);
dataset.PutPN(Tags.PatientName);
dataset.PutLO(Tags.PatientID);
dataset.PutDA(Tags.PatientBirthDate);
dataset.PutCS(Tags.PatientSex);
dataset.PutAS(Tags.PatientAge);
dataset.PutUI(Tags.StudyInstanceUniqueId, studyInstanceUniqueIds.ToArray());
dataset.PutSH(Tags.StudyID);
return studyInstanceUniqueIds.Any() ? RetrieveDatasetsFromServiceClassProvider(dataset, sopClassUniqueId) : new List<DataSet>();
}
public override DataSet AddNewItem()
{
var item = new DataSet(parent);
m_list.Add(item);
return item;
}
private List<DataSet> ExecuteCFindDicomCommand(IActiveAssociation active, DataSet dataSet, int pcid)
{
IAssociation association = active.Association;
if (association.GetAcceptedPresContext(UIDs.StudyRootQueryRetrieveInformationModelFIND, TransferSyntaxUniqueId) == null)
{
Logger.Error(SOP_CLASS_UNIQUEID_NOT_SUPPORTED);
return null;
}
IDicomCommand cFindDicomCommand = _dcmObjectFactory.NewCommand().InitCFindRQ(association.NextMsgID(), UIDs.StudyRootQueryRetrieveInformationModelFIND, Priority.HIGH);
IDimse dimseRequest = _associationFactory.NewDimse(pcid, cFindDicomCommand, dataSet);
string message = string.Format("{0} sending CFind request to {1} @ {2}:{3}", _aAssociateRequest.Name, _aAssociateRequest.ApplicationEntityTitle, _hostName, _port);
Logger.Info(message);
FutureDimseResponse dimseResponse = active.Invoke(dimseRequest);
while (!dimseResponse.IsReady())
{
Thread.Sleep(0);
}
return dimseResponse.ListPending().Select(dimse => dimse.DataSet).ToList();
}
private void StoreToFile(DcmParser parser, DataSet ds, FileInfo file, DcmEncodeParam encParam)
{
Stream outputStream = OpenOutputStream(file);
try {
ds.WriteFile(outputStream, encParam);
if (parser.ReadTag == Tags.PixelData) {
ds.WriteHeader(outputStream, encParam, parser.ReadTag, parser.ReadVR, parser.ReadLength);
Copy(parser.InputStream, outputStream);
}
}
finally {
try {
outputStream.Close();
}
catch (IOException ignore)
{
Logger.Error(ignore);
}
}
}
private void MoveSeries(string studyInstanceUniqueId, IEnumerable<string> seriesInstanceUniqueIds, string applicationEntityDestination)
{
DataSet seriesCMoveDataset = new DataSet();
seriesCMoveDataset.FileMetaInfo = GenerateFileMetaInfo(UIDs.StudyRootQueryRetrieveInformationModelMOVE);
seriesCMoveDataset.PutCS(Tags.QueryRetrieveLevel, "SERIES");
seriesCMoveDataset.PutUI(Tags.StudyInstanceUniqueId, studyInstanceUniqueId);
seriesCMoveDataset.PutUI(Tags.SeriesInstanceUniqueId, seriesInstanceUniqueIds.Distinct().ToArray());
LogDataSetValues(seriesCMoveDataset);
CMoveDataSet(seriesCMoveDataset, applicationEntityDestination);
}
private String ToFileID(DataSet ds, uint tag)
{
try {
String s = ds.GetString(tag);
if (string.IsNullOrEmpty(s)) {
return "__NULL__";
}
char[] ins = s.ToUpper().ToCharArray();
var outs = new char[Math.Min(8, ins.Length)];
for (int i = 0; i < outs.Length; ++i) {
outs[i] = ins[i] >= '0' && ins[i] <= '9' || ins[i] >= 'A' && ins[i] <= 'Z' ? ins[i] : '_';
}
return new String(outs);
}
catch (DcmValueException dcmValueException) {
Logger.Error(dcmValueException);
return "__ERR__";
}
}
private List<DataSet> RetrieveDatasetsFromServiceClassProvider(DataSet dataSet, string sopClassUniqueId)
{
int pcid = _presentationContextIdStart;
_presentationContextIdStart += 2;
var datasets = new List<DataSet>();
IActiveAssociation activeAssociation = null;
try
{
_aAssociateRequest.AddPresContext(_associationFactory.NewPresContext(pcid, sopClassUniqueId, DefinedTransferSyntaxes));
activeAssociation = OpenAssociation();
if (activeAssociation != null)
{
datasets = ExecuteCFindDicomCommand(activeAssociation, dataSet, pcid);
}
}
finally
{
if (activeAssociation != null)
{
activeAssociation.Release(true);
}
_aAssociateRequest.RemovePresentationContext(pcid);
}
return datasets;
}
public virtual IDimse NewDimse(int presentationContextId, IDicomCommand dicomCommand, DataSet dataSet)
{
return new Dimse(presentationContextId, dicomCommand, dataSet, null);
}
private FutureDimseResponse SendDataset(IActiveAssociation activeAssociation, DcmParser parser, DataSet dataSet)
{
String sopInstUniqueId = dataSet.GetString(Tags.SOPInstanceUniqueId);
if (string.IsNullOrEmpty(sopInstUniqueId))
{
Logger.Error("SOP instance UniqueId is null or empty");
return null;
}
String sopClassUniqueId = dataSet.GetString(Tags.SOPClassUniqueId);
if (string.IsNullOrEmpty(sopClassUniqueId))
{
Logger.Error("SOP class UniqueId is null or empty");
return null;
}
PresentationContext pc = null;
IAssociation association = activeAssociation.Association;
if (parser != null)
{
if (parser.DcmDecodeParam.encapsulated)
{
String tsUniqueId = dataSet.FileMetaInfo.TransferSyntaxUniqueId;
if ((pc = association.GetAcceptedPresContext(sopClassUniqueId, tsUniqueId)) == null)
{
Logger.Error(SOP_CLASS_UNIQUEID_NOT_SUPPORTED);
return null;
}
}
else if (IsSopClassUniqueIdNotSupported(association, sopClassUniqueId, out pc))
{
Logger.Error(SOP_CLASS_UNIQUEID_NOT_SUPPORTED);
return null;
}
DicomCommand cStoreRequest = _dcmObjectFactory.NewCommand().InitCStoreRQ(association.NextMsgID(), sopClassUniqueId, sopInstUniqueId, Priority.HIGH);
return activeAssociation.Invoke(_associationFactory.NewDimse(pc.pcid(), cStoreRequest, new FileDataSource(parser, dataSet, new byte[2048])));
}
if ((dataSet.FileMetaInfo != null) && (dataSet.FileMetaInfo.TransferSyntaxUniqueId != null))
{
String tsUniqueId = dataSet.FileMetaInfo.TransferSyntaxUniqueId;
if ((pc = association.GetAcceptedPresContext(sopClassUniqueId, tsUniqueId)) == null)
{
Logger.Error(SOP_CLASS_UNIQUEID_NOT_SUPPORTED);
return null;
}
}
else if (IsSopClassUniqueIdNotSupported(association, sopClassUniqueId, out pc))
{
Logger.Error(SOP_CLASS_UNIQUEID_NOT_SUPPORTED);
return null;
}
DicomCommand cStoreRq = _dcmObjectFactory.NewCommand().InitCStoreRQ(association.NextMsgID(), sopClassUniqueId, sopInstUniqueId, Priority.HIGH);
IDimse dimse = _associationFactory.NewDimse(pc.pcid(), cStoreRq, dataSet);
return activeAssociation.Invoke(dimse);
}
public virtual void AddItem(DataSet item)
{
throw new NotSupportedException(ToString());
}
/// <summary>
/// Send C-FIND for instance
/// <param name="studyInstanceUniqueIds">The studies' instance UniqueIds</param>
/// <param name="seriesInstanceUniqueIds">The series' instance UniqueIds</param>
/// </summary>
public IList<DataSet> CFindInstance(IEnumerable<string> studyInstanceUniqueIds, IEnumerable<string> seriesInstanceUniqueIds)
{
const string sopClassUniqueId = UIDs.StudyRootQueryRetrieveInformationModelFIND;
var datasets = new List<DataSet>();
List<string> seriesNotCached = RetrieveItemsFromTheCache(seriesInstanceUniqueIds, datasets);
List<string> studiesNotCached = RetrieveItemsFromTheCache(studyInstanceUniqueIds, datasets);
var dataset = new DataSet();
dataset.FileMetaInfo = GenerateFileMetaInfo(sopClassUniqueId);
dataset.PutUI(Tags.SOPInstanceUniqueId);
dataset.PutCS(Tags.QueryRetrieveLevel, "IMAGE");
dataset.PutUI(Tags.SeriesInstanceUniqueId, seriesNotCached.ToArray());
dataset.PutUI(Tags.StudyInstanceUniqueId, studiesNotCached.ToArray());
datasets.AddRange(RetrieveDatasetsFromServiceClassProvider(dataset, sopClassUniqueId));
return datasets;
}