コード例 #1
0
ファイル: Model.cs プロジェクト: exitmouse/drfcsharp
        public Classification ICMInfer(ImageData test_input)
        {
            Classification curr_classification = LogisticInfer(test_input); //Muahaha better initialization. I don't think this is hacky.
            //for(int x = 0; x < ImageData.x_sites; x++) for(int y = 0; y < ImageData.y_sites; y++) curr_classification[x,y] = Label.OFF;
            bool converged = false;
            int loopcount = 0;
            while(!converged && loopcount < 300)
            {
                loopcount++;
                int changecount = 0;
                converged = true;
                for(int x = 0; x < test_input.XSites; x++) for(int y = 0; y < test_input.YSites; y++)
                {
                    Label old = curr_classification[x,y];
                    //We have prob 1 vs prob 0. Prob n \propto exp(A + sum over neighbors of I calculated at n)
                    //So we can just calculate A + sum over neighbors of I for each labeling of the site, and
                    //assign to the site whichever is higher.
                    var sitefeatures = Transformer.Transform(test_input[x,y]);
                    if(x == 6 && y == 10)
                    {
                        Console.WriteLine("Components of the dot product w*sitefeatures:");
                        for(int i = 0; i < sitefeatures.Count; i++)
                        {
                            Console.WriteLine("{0}th component: {1}", i, W[i]*sitefeatures[i]);
                        }

                    }
                    double on_association = MathWrapper.Log(MathWrapper.Sigma(W.DotProduct(sitefeatures)));
                    double off_association = MathWrapper.Log(MathWrapper.Sigma(-1 * W.DotProduct(sitefeatures)));
                    double on_interaction = 0d;
                    double off_interaction = 0d;

                    foreach(Tuple<int,int> t in test_input.GetNeighbors(x,y))
                    {
                        DenseVector mu;
                        if(ImageData.IsEarlier(x,y,t.Item1,t.Item2))mu = Crosser.Cross(test_input[x,y],test_input[t.Item1,t.Item2]);
                        else mu = Crosser.Cross(test_input[t.Item1,t.Item2], test_input[x,y]);
                        //Console.WriteLine("Magnitude of Interaction: {0}",v.DotProduct(mu));
                        if(curr_classification[t.Item1,t.Item2] == Label.ON)
                        {
                            on_interaction += V.DotProduct(mu);
                            off_interaction -= V.DotProduct(mu);
                        }
                        else
                        {
                            on_interaction -= V.DotProduct(mu);
                            off_interaction += V.DotProduct(mu);
                        }
                    }

                    if(on_association + on_interaction > off_association + off_interaction)
                    {
                        /*Console.WriteLine("On Association: {0}",on_association);
                        Console.WriteLine("Off Association: {0}",off_association);*/
                        curr_classification[x,y] = Label.ON;
                    }
                    else
                    {
                        curr_classification[x,y] = Label.OFF;
                    }
                    if(curr_classification[x,y] != old)
                    {
                        converged = false;
                        changecount += 1;
                    }
                }
                Console.WriteLine("Number of changes in this round of ICM: {0}",changecount);
            }
            return curr_classification;
        }
コード例 #2
0
ファイル: Model.cs プロジェクト: exitmouse/drfcsharp
 public Classification LogisticInfer(ImageData test_input)
 {
     Classification curr_classification = new Classification(new Label[test_input.XSites, test_input.YSites]);
     for(int x = 0; x < test_input.XSites; x++) for(int y = 0; y < test_input.YSites; y++)
     {
         double modeled_prob_of_one = MathWrapper.Sigma(W.DotProduct(Transformer.Transform(test_input[x,y])));
         //double prob_one = ((double)OnsSeen)/((double) SitesSeen);
         //double prob_zero = 1d - prob_one;
         double lambda = MathWrapper.Log(modeled_prob_of_one) - MathWrapper.Log (1 - modeled_prob_of_one)/* + MathWrapper.Log (prob_one/prob_zero)*/;
         if(lambda > 0)
             curr_classification[x,y] = Label.ON;
         else
             curr_classification[x,y] = Label.OFF;
     }
     return curr_classification;
 }
コード例 #3
0
ファイル: Model.cs プロジェクト: exitmouse/drfcsharp
        public Classification MaximumAPosterioriInfer(ImageData test_input)
        {
            Vertex[,] site_nodes = new Vertex[test_input.XSites, test_input.YSites];
            for(int i = 0; i < test_input.XSites; i++) for(int j = 0; j < test_input.YSites; j++)
            {
                site_nodes[i,j] = new Vertex();
            }
            Vertex source = new Vertex();
            Vertex target = new Vertex();

            for(int j = 0; j < test_input.YSites; j++)
            {
                for(int i = 0; i < test_input.XSites; i++)
                {
                    Vertex t = site_nodes[i,j];
                    //Add the edge with capacity lambda_t from the source, or the edge with capacity -lambda_t to the target.
                    //Lambda_t is the log-likelihood ratio: log( p(y | x = 1) / p(y | x = 0) ).
                    //Using Bayes' law, we have
                    //Posterior Odds = P(x = 1 | y)/P(x = 0 | y) = Likelihood Ratio * Prior Odds = (P(y | x = 1) / P(y | x = 0))*(P(x=1)/P(x=0)) = e^(lambda_t)*1
                    //So lambda_t should be log(Posterior Odds) + log(Prior Odds) = log(P(x=1|y))-log(P(x=0|y)) + possibly 0?

                    //Now, P(x=1|y) is modeled as sigma(w^T * h(y)), so this should be
                    //log(sigma(w^T * h(y))) - log(1-sigma(w^T * h(y))).
                    //However, all these calculations were done at roughly 5:50 AM and I hadn't slept yet, so...
                    //I could totally be wrong.
                    //-Jesse Selover
                    double modeled_prob_of_one = MathWrapper.Sigma(W.DotProduct(Transformer.Transform(test_input[i,j])));
                    /*double prob_one = ((double)Ons_seen)/((double) Sites_seen);
                    double prob_zero = 1d - prob_one;
                    double lambda = MathWrapper.Log(modeled_prob_of_one) - MathWrapper.Log (1 - modeled_prob_of_one) + MathWrapper.Log (prob_one/prob_zero);*/
                    Edge.AddEdge(source,t,-MathWrapper.Log(modeled_prob_of_one),0);
                    Edge.AddEdge(t,target,-MathWrapper.Log(1-modeled_prob_of_one),0);
                    Console.WriteLine("Edge to target with strength {0}",-MathWrapper.Log(1-modeled_prob_of_one));
                    //Add an edge from the source with the modeled probability of 1, and an edge to the target with the modeled probability of 0.
                    //Console.WriteLine(ImageData.GetNewConnections(i,j).Count);
                    foreach(Tuple<int,int> other in test_input.GetNewConnections(i,j))
                    {
                        Vertex u = site_nodes[other.Item1,other.Item2];
                        //Add the edge with capacity Beta_{t,u} in both directions between t and u.
                        //DRFS (2006) says that the data dependent smoothing term is max(0,v^T * mu_{i,j}y)
                        DenseVector mu;
                        if(ImageData.IsEarlier(i,j,other.Item1,other.Item2))mu = Crosser.Cross(test_input[i,j],test_input[other.Item1,other.Item2]);
                        else mu = Crosser.Cross(test_input[other.Item1,other.Item2], test_input[i,j]);
                        double capacity = Math.Max(0,V.DotProduct(mu));
                        Console.WriteLine ("\tInternode edge with strength {0}",capacity);
                        Edge.AddEdge(t,u,capacity,capacity);
                    }
                }
            }
            double flow_added = 0;

            while(true)
            {
                flow_added = source.AddFlowTo(new List<Vertex>(), target, 400000000d);
                if(flow_added <= 0.0000001d) break;
            }; //Find the maximum flow
            source.ResidualCapacityConnectedNodes(); //Find the source end of the minimum cut

            Label[,] toReturn = new Label[test_input.XSites, test_input.YSites];
            for(int i = 0; i < test_input.XSites; i++) for(int j = 0; j < test_input.YSites; j++)
            {
                if(site_nodes[i,j].tagged_as_one) toReturn[i,j] = Label.ON;
            }
            return new Classification(toReturn);
        }
コード例 #4
0
ファイル: ImageDataTests.cs プロジェクト: exitmouse/drfcsharp
 public void Init()
 {
     imgd = ResourceManager.UsingTestingBitmap("testgrid1px.png", img => ImageData.FromImage(img));
 }