/// <summary>
/// Performs a SERIES query for the given Study Instance Uid.
/// </summary>
public IList <SeriesIdentifier> SeriesQuery(string studyInstanceUid)
{
Platform.CheckForEmptyString(studyInstanceUid, "studyInstanceUid");
SeriesIdentifier criteria = new SeriesIdentifier();
criteria.StudyInstanceUid = studyInstanceUid;
return(SeriesQuery(criteria));
}
/// <summary>
/// Performs a SERIES level query.
/// </summary>
/// <exception cref="FaultException{DataValidationFault}">Thrown when some part of the data in the request is poorly formatted.</exception>
/// <exception cref="FaultException{QueryFailedFault}">Thrown when the query fails.</exception>
public IList<SeriesIdentifier> SeriesQuery(SeriesIdentifier queryCriteria)
{
var results = _real.SeriesQuery(queryCriteria);
AuditHelper.LogQueryIssued(_remoteServer.AETitle, _remoteServer.ScpParameters.HostName, EventSource.CurrentUser,
EventResult.Success, SopClass.StudyRootQueryRetrieveInformationModelFindUid,
queryCriteria.ToDicomAttributeCollection());
return results;
}
/// <summary>
/// Performs a SERIES level query.
/// </summary>
/// <exception cref="FaultException{DataValidationFault}">Thrown when some part of the data in the request is poorly formatted.</exception>
/// <exception cref="FaultException{QueryFailedFault}">Thrown when the query fails.</exception>
public IList <SeriesIdentifier> SeriesQuery(SeriesIdentifier queryCriteria)
{
IList <SeriesIdentifier> results = _client.SeriesQuery(queryCriteria);
if (_seriesComparer != null)
{
results = CollectionUtils.Sort(results, _seriesComparer.Compare);
}
return(results);
}
public IList<SeriesIdentifier> SeriesQuery(SeriesIdentifier queryCriteria)
{
var request = new SeriesQueryRequest
{
Criteria = queryCriteria,
LocalApplicationEntity = _localAE,
RemoteApplicationEntity = new ApplicationEntity(_remoteAE)
};
var query = new DicomStudyRootQueryApplication();
var result = query.SeriesQuery(request);
return result.Results;
}
public IList <SeriesIdentifier> SeriesQuery(SeriesIdentifier queryCriteria)
{
var request = new SeriesQueryRequest
{
Criteria = queryCriteria,
LocalApplicationEntity = _localAE,
RemoteApplicationEntity = new ApplicationEntity(_remoteAE)
};
var query = new DicomStudyRootQueryApplication();
var result = query.SeriesQuery(request);
return(result.Results);
}
private IEnumerable<Series> GetSeries(SeriesIdentifier criteria)
{
return GetSeries(new SeriesEntry { Series = criteria });
}
public IList<SeriesIdentifier> SeriesQuery(SeriesIdentifier criteria)
{
var entries = GetSeries(criteria);
return entries.Select(e => e.ToStoreEntry().Series).ToList();
}
public IList<SeriesIdentifier> LocateSeriesByStudy(string studyInstanceUid, out LocateFailureInfo[] failures)
{
Platform.CheckForEmptyString(studyInstanceUid, "studyInstanceUid");
var criteria = new SeriesIdentifier {StudyInstanceUid = studyInstanceUid};
var result = LocateSeries(new LocateSeriesRequest {Criteria = criteria});
failures = result.Failures.ToArray();
return result.Series;
}
public System.Collections.Generic.IList<SeriesIdentifier> SeriesQuery(SeriesIdentifier queryCriteria)
{
var criteria = new SeriesEntry {Series = queryCriteria};
var result = Real.GetSeriesEntries(new GetSeriesEntriesRequest { Criteria = criteria });
return result.SeriesEntries.Select(e => e.Series).ToList();
}
public IList <SeriesIdentifier> SeriesQuery(SeriesIdentifier queryCriteria)
{
return(Query <SeriesIdentifier, StudyRootFindScu>(queryCriteria));
}
/// <summary>
/// Performs a SERIES level query.
/// </summary>
/// <exception cref="FaultException{DataValidationFault}">Thrown when some part of the data in the request is poorly formatted.</exception>
/// <exception cref="FaultException{QueryFailedFault}">Thrown when the query fails.</exception>
public IList <SeriesIdentifier> SeriesQuery(SeriesIdentifier queryCriteria)
{
return(base.Channel.SeriesQuery(queryCriteria));
}
// Loads annotations from local storage
private List<IAimDocumentInstance> LoadLocalAimDocumentsForStudy(string studyInstanceUid)
{
var seriesIdentifier = new SeriesIdentifier { StudyInstanceUid = studyInstanceUid, Modality = AimManager.AimModality };
var seriesEntryRequest = new GetSeriesEntriesRequest { Criteria = new SeriesEntry { Series = seriesIdentifier } };
IList<SeriesEntry> entries = null;
Platform.GetService<IStudyStoreQuery>(s => entries = s.GetSeriesEntries(seriesEntryRequest).SeriesEntries);
var instanceToAimFileInfoMap = new Dictionary<string, AimFileInfo>();
// Get all unique AE Titles for the study. Can study have more than one?
// We only need to query each AETitle once, or there will be duplicates/errors.
var studyAes = (from seriesEntry in entries where seriesEntry != null select seriesEntry.Series.RetrieveAE).GroupBy(ae => ae.AETitle).Select(ae1 => ae1.First()).OfType<IDicomServiceNode>().ToList();
if (!studyAes.Any())
{
Platform.Log(LogLevel.Debug, "Study ({0}} has no SR (AIM Annotations) objects", studyInstanceUid);
return null;
}
foreach (var studyAe in studyAes)
{
IStudyLoader studyLoader;
try
{
studyLoader = studyAe.GetService<IStudyLoader>();
}
catch (Exception ex)
{
throw new AimManagerException("Cannot get study loader", ex);
}
int numberOfSops = studyLoader.Start(new StudyLoaderArgs(studyInstanceUid, null, new StudyLoaderOptions(true)));
for (int i = 0; i < numberOfSops; i++)
{
using (var sop = studyLoader.LoadNextSop())
{
if (sop != null && sop.Modality == AimManager.AimModality)
{
var localSopDataSource = sop.DataSource as ILocalSopDataSource;
if (localSopDataSource != null)
{
var filePathName = localSopDataSource.Filename;
switch (AimManager.GetAimVersionFromSop(sop))
{
case AimVersion.AimVersion3:
instanceToAimFileInfoMap.Add(filePathName,
new AimFileInfo(AimVersion.AimVersion3, sop.StudyInstanceUid, sop.SeriesInstanceUid, sop.SopInstanceUid));
break;
case AimVersion.AimVersion4:
instanceToAimFileInfoMap.Add(filePathName,
new AimFileInfo(AimVersion.AimVersion4, sop.StudyInstanceUid, sop.SeriesInstanceUid, sop.SopInstanceUid));
break;
}
}
}
}
}
}
if (instanceToAimFileInfoMap.Any())
{
var aimDocumentInstances = new List<IAimDocumentInstance>();
var aim4Instances = instanceToAimFileInfoMap.Where(instance => instance.Value.AimVersion == AimVersion.AimVersion4).ToList();
if (aim4Instances.Any())
{
using (var dcmHelper = new Aim4.Aim4NativeDcmHelper())
{
foreach (var instanceInfo in aim4Instances)
{
var aimDocumentInstance = ReadAimDocumentFromDicomFile(dcmHelper,
instanceInfo.Key, instanceInfo.Value.StudyInstanceUid,
instanceInfo.Value.SeriesInstanceUid, instanceInfo.Value.SopInstanceUid);
if (aimDocumentInstance != null)
aimDocumentInstances.Add(aimDocumentInstance);
}
}
}
return aimDocumentInstances.Any() ? aimDocumentInstances : null;
}
return null;
}
private void LoadNewSeries(List<string> changedStudyInstanceUids)
{
const string segmentationModality = "SEG";
foreach (string studyInstanceUid in changedStudyInstanceUids)
{
Study loadedStudy = ImageViewer.StudyTree.GetStudy(studyInstanceUid);
if (loadedStudy == null)
continue; // the given study is not loaded in this ImageViewer
// Query for new segmentation SOP Instances for the given study
var seriesIdentifier = new SeriesIdentifier
{
StudyInstanceUid = studyInstanceUid,
Modality = segmentationModality
};
var seriesEntryRequest = new GetSeriesEntriesRequest
{Criteria = new SeriesEntry {Series = seriesIdentifier}};
List<SeriesEntry> entries = null;
Platform.GetService<IStudyStoreQuery>(
s =>
entries =
s.GetSeriesEntries(seriesEntryRequest)
.SeriesEntries.Where(
entry =>
loadedStudy.Series.All(series => series.SeriesInstanceUid != entry.Series.SeriesInstanceUid))
.ToList());
// Get all unique AE Titles for the study. Can study have more than one?
// We only need to query each AETitle once, or there will be duplicates/errors.
List<IDicomServiceNode> studyAes =
(from seriesEntry in entries where seriesEntry != null select seriesEntry.Series.RetrieveAE).GroupBy
(
ae => ae.AETitle).Select(ae1 => ae1.First()).OfType<IDicomServiceNode>().ToList();
if (!studyAes.Any())
continue;
var reallyUpdatedStudies = new HashSet<string>();
foreach (IDicomServiceNode studyAe in studyAes)
{
IStudyLoader studyLoader;
try
{
studyLoader = studyAe.GetService<IStudyLoader>();
}
catch (Exception ex)
{
//Platform.Log(LogLevel.Error, ex, "Cannot get study loader", studyAe);
throw new Exception("Cannot get study loader", ex);
}
int numberOfSops =
studyLoader.Start(new StudyLoaderArgs(studyInstanceUid, null, new StudyLoaderOptions(true)));
// Load new segmentation SOP Instances
if (numberOfSops > 0)
{
for (int i = 0; i < numberOfSops; i++)
{
Sop sop = studyLoader.LoadNextSop();
if (sop != null && sop.Modality == segmentationModality)
{
try
{
if (ImageViewer.StudyTree.AddSop(sop))
{
SegmentationDocument segmentationDocument =
new SegmentationDeserializer(sop).DeserializeSegmenationDocument();
if (segmentationDocument != null)
{
foreach (Seg seg in segmentationDocument.Segs)
{
IPresentationImage segPresentationImage = null;
if (seg.ImageSeriesUid == null)
{
if (seg.SegmentImageData != null &&
seg.SegmentImageData.SegmentFrameData != null &&
seg.SegmentImageData.SegmentFrameData.Count > 0)
{
foreach (
IImageBox imageBox in
ImageViewer.PhysicalWorkspace.ImageBoxes.Where(
imageBox => imageBox != null))
{
if (imageBox.DisplaySet != null)
{
segPresentationImage = SegmentationGraphicsHelpers.
PresentationImageFromPositionOrientation(
seg.SegmentImageData.SegmentFrameData[0].
ImagePositionPatient,
seg.SegmentImageData.SegmentFrameData[0].
ImageOrientationPatient,
imageBox.DisplaySet,
seg.SegmentImageData.FrameOfReferenceUid);
}
if (segPresentationImage != null)
break;
}
}
}
else
{
segPresentationImage =
GetFirstPresentationImageForSeries(sop.StudyInstanceUid,
seg.ImageSeriesUid);
}
if (segPresentationImage == null)
{
Platform.Log(LogLevel.Info,
"Failed to find a series and image to display a segmentation frame on (SOP Instance UID={0}, Label = {1}) (New)",
segmentationDocument.SopInstanceUid, seg.Label);
}
else
{
SegmentationGraphicsHelpers.CreateSeriesGraphicsForSeg(
segPresentationImage, seg, segmentationDocument,
sop.DataSource as IDicomMessageSopDataSource);
reallyUpdatedStudies.Add(studyInstanceUid);
}
var sopProvider = segPresentationImage as ISopProvider;
if (sopProvider != null)
AddSegmentationMenuInfo(segmentationDocument, seg, sopProvider.Sop);
}
}
}
else
{
sop.Dispose();
}
}
catch (SopValidationException ex)
{
Platform.Log(LogLevel.Error, ex,
"Failed to add newly loaded Segmentation SOP to the StudyTree (studyInstanceUid={0}; SOPInstaceUID={1})",
sop.StudyInstanceUid, sop.SopInstanceUid);
sop.Dispose();
}
}
else
{
sop.Dispose();
}
}
}
}
// Update component, if present
if (reallyUpdatedStudies.Count > 0)
UpdateSegmentationTreeInComponent();
}
}
