public static Dictionary <string, List <BarInfo> > GetAllSampleMap(string dir, string[] filePatterns, IParticipantFinder finder)
{
DefaultParticipantFinder dfinder = new DefaultParticipantFinder(finder, string.Empty);
var files = (from filepattern in filePatterns
from subdir in Directory.GetDirectories(dir)
from file in Directory.GetFiles(subdir, filepattern)
where !File.Exists(file + ".bad")
select file).GroupBy(m => Path.GetFileName(m)).ToList().ConvertAll(m => m.Last());
var plist = (from file in files
let barcode = dfinder.FindParticipant(Path.GetFileName(file))
where barcode != string.Empty
orderby barcode
select new BarInfo(barcode, file)).ToList();
return(plist.GroupBy(m => m.BarCode).ToDictionary(m => m.Key, m => m.ToList()));
}
public static Dictionary <string, List <BarInfo> > GetSampleMap(string dir, string[] filePatterns, IParticipantFinder finder, bool paired)
{
DefaultParticipantFinder dfinder = new DefaultParticipantFinder(finder, string.Empty);
var files = new HashSet <string>();
foreach (var filepattern in filePatterns)
{
if (files.Count > 0)
{
break;
}
//some file will be duplicated in multiple directory, so we need to keep only one such file
files = new HashSet <string>((from subdir in Directory.GetDirectories(dir)
from file in Directory.GetFiles(subdir, filepattern)
where !File.Exists(file + ".bad")
select file).GroupBy(m => Path.GetFileName(m)).ToList().ConvertAll(m => m.Last()));
}
var plist = (from file in files
let barcode = dfinder.FindParticipant(Path.GetFileName(file))
where barcode != string.Empty
orderby barcode
select new BarInfo(barcode, file)).ToList();
if (paired)
{
var pgroup = plist.GroupBy(m => m.Paticipant).ToList();
var result = new Dictionary <string, List <BarInfo> >();
foreach (var m in pgroup)
{
if (m.Count() == 1)
{
continue;
}
if ((from mm in m select mm.BarCode).Distinct().Count() == 1)
{
continue;
}
var ml = m.ToList();
for (int i = 0; i < ml.Count; i++)
{
for (int j = i + 1; j < ml.Count; j++)
{
if (ml[j].Sample - ml[i].Sample == 10)
{
result[m.Key] = new List <BarInfo>(new[] { ml[i], ml[j] });
break;
}
}
}
}
return(result);
}
else
{
return(plist.GroupBy(m => m.BarCode).ToDictionary(m => m.Key, m => m.ToList()));
}
}
