public void ForEach(Action <int, int, int, int[]> perVertexLogic) { var metadata = UnbufferedIO.ReadFile <int>(this.filePrefix + "-nodes"); var maxDegree = 0; for (int i = 0; i < metadata.Length; i += 2) { maxDegree = Math.Max(maxDegree, metadata[i + 1]); } var neighbors = new int[2 * maxDegree]; var neighborsOffset = 0; using (var reader = new UnbufferedIO.SequentialReader(this.filePrefix + "-edges")) { reader.Read(neighbors, 0, neighbors.Length); for (int i = 0; i < metadata.Length; i += 2) { var vertex = metadata[i + 0]; var degree = metadata[i + 1]; if (neighborsOffset + degree > neighbors.Length - 1) { Array.Copy(neighbors, neighborsOffset, neighbors, 0, neighbors.Length - neighborsOffset); reader.Read(neighbors, neighbors.Length - neighborsOffset, neighborsOffset); neighborsOffset = 0; } perVertexLogic(vertex, degree, neighborsOffset, neighbors); neighborsOffset += degree; } } }
public static T[] ReadFile <T>(string filename) { using (var reader = new UnbufferedIO.SequentialReader(filename)) { var result = new T[reader.Length / System.Runtime.InteropServices.Marshal.SizeOf(typeof(T))]; // if the thing to read is bigger than 2GB, Buffer.BlockCopy will choke (yay 32 bits) if (((Int64)result.Length) * System.Runtime.InteropServices.Marshal.SizeOf(typeof(T)) > Int32.MaxValue) { var intermediate = new T[1 << 20]; var cursor = 0; while (reader.Read(intermediate, 0, intermediate.Length) > 0) { Array.Copy(intermediate, 0, result, cursor, Math.Min(intermediate.Length, result.Length - cursor)); cursor += intermediate.Length; } } else { reader.Read(result, 0, result.Length); } return(result); } }
public void Scan(Action <uint, uint, int, int, byte[]> perEdgeAction) { var next16Offset = 0; var next08Offset = 0; using (var last08Reader = new UnbufferedIO.SequentialReader(prefix + "-last08")) { for (int i = 0; i < high32Buffer.Length; i += 2) { var high32value = high32Buffer[i]; var high32count = (int)high32Buffer[i + 1]; var readLast08 = last08Reader.Read <byte>(last08Buffer, 0, last08ToRead[i / 2]); if (readLast08 != last08ToRead[i / 2]) { Console.WriteLine("Read error, last08; requested {0}, read {1}", last08ToRead[i / 2], readLast08); } var last08Offset = 0; // do work for all these dudes var xHigh32 = (high32value & 0xFFFF0000) << 0; var yHigh32 = (high32value & 0x0000FFFF) << 16; for (int j = 0; j < high32count; j++) { var xNext16 = xHigh32 + (uint)((next16Buffer[next16Offset + 2 * j] & 0xFF00) << 0); var yNext16 = yHigh32 + (uint)((next16Buffer[next16Offset + 2 * j] & 0x00FF) << 8); var next16count = (int)next16Buffer[next16Offset + 2 * j + 1]; if (next16count == 0) { next16count = ((int)ushort.MaxValue) + 1; } for (int k = 0; k < next16count; k++) { var xNext08 = xNext16 + (uint)((next08Buffer[next08Offset + 2 * k] & 0xF0) << 0); var yNext08 = yNext16 + (uint)((next08Buffer[next08Offset + 2 * k] & 0x0F) << 4); var next08count = (int)next08Buffer[next08Offset + 2 * k + 1]; if (next08count == 0) { next08count = ((int)byte.MaxValue) + 1; } perEdgeAction(xNext08, yNext08, next08count, last08Offset, last08Buffer); last08Offset += next08count; } next08Offset += 2 * next16count; } next16Offset += 2 * high32count; } } }
public static void TestTransformedAlt(string prefix) { var stopwatch = System.Diagnostics.Stopwatch.StartNew(); var high32MetaData = UnbufferedIO.ReadFile <uint>(prefix + "-high32"); var high32Counts = 0L; for (int i = 0; i < high32MetaData.Length; i += 2) { high32Counts += high32MetaData[i + 1]; } Console.WriteLine("Read {0} high32, expecting {1} next16", high32MetaData.Length / 2, high32Counts); var next16Total = 0L; var next16Count = 0L; var next16Buffer = new ushort[1 << 20]; using (var next16Reader = new UnbufferedIO.SequentialReader(prefix + "-next16")) { for (var read = next16Reader.Read <ushort>(next16Buffer, 0, 1 << 20); read > 0; read = next16Reader.Read <ushort>(next16Buffer, 0, 1 << 20)) { next16Total += read / 2; for (int i = 0; i < read; i += 2) { next16Count += next16Buffer[i + 1]; } } } Console.WriteLine("Read {0} next16, expecting {1} next08", next16Total, next16Count); var next08Total = 0L; var next08Count = 0L; var next08Buffer = new byte[1 << 20]; using (var next08Reader = new UnbufferedIO.SequentialReader(prefix + "-next08")) { for (var read = next08Reader.Read <byte>(next08Buffer, 0, 1 << 20); read > 0; read = next08Reader.Read <byte>(next08Buffer, 0, 1 << 20)) { next08Total += read / 2; for (int i = 0; i < read; i += 2) { next08Count += next08Buffer[i + 1] == 0 ? 256 : (int)next08Buffer[i + 1]; } } } Console.WriteLine("Read {0} next08, expecting {1} last08", next08Total, next08Count); Console.WriteLine(stopwatch.Elapsed); }
public static void ConvertGraph(string filename) { using (var nodeWriter = new BinaryWriter(File.OpenWrite(filename + "-nodes"))) { using (var edgeWriter = new BinaryWriter(File.OpenWrite(filename + "-edges"))) { using (var reader = new UnbufferedIO.SequentialReader(filename)) { var ints = new int[2]; var bytesToRead = reader.Length - 8; // read vertex name and degree reader.Read(ints, 0, 2); var vertex = ints[0]; var degree = ints[1]; while (bytesToRead > 0) { // allocate space if needed if (ints.Length < degree + 2) { ints = new int[degree + 2]; } bytesToRead -= 4 * reader.Read(ints, 0, (degree + 2)); nodeWriter.Write(vertex); nodeWriter.Write(degree); for (int i = 0; i < degree; i++) { edgeWriter.Write(ints[i]); } vertex = ints[degree]; degree = ints[degree + 1]; } } } } }
public static void ScanGraphHilbert(string filename, Action <uint, uint, uint, uint, uint[]> perVertexLogic) { var metadata = UnbufferedIO.ReadFile <uint>(filename + "-upper"); var maxCount = (uint)0; for (int i = 0; i < metadata.Length; i += 3) { maxCount = Math.Max(maxCount, metadata[i + 2]); } var edges = new uint[2 * maxCount]; var edgesOffset = (uint)0; using (var reader = new UnbufferedIO.SequentialReader(filename + "-lower")) { reader.Read(edges, 0, edges.Length); for (int i = 0; i < metadata.Length; i += 3) { var sourceUpper = metadata[i + 0] << 16; var targetUpper = metadata[i + 1] << 16; var count = metadata[i + 2]; if (edgesOffset + count > edges.Length - 1) { Array.Copy(edges, edgesOffset, edges, 0, edges.Length - edgesOffset); reader.Read(edges, (int)(edges.Length - edgesOffset), (int)edgesOffset); edgesOffset = 0; } perVertexLogic(sourceUpper, targetUpper, edgesOffset, count, edges); edgesOffset += count; } } }
public static void TestTransformed(string prefix) { var stopwatch = System.Diagnostics.Stopwatch.StartNew(); var high32MetaData = UnbufferedIO.ReadFile <uint>(prefix + "-high32"); var next16Reader = new UnbufferedIO.SequentialReader(prefix + "-next16"); var next08Reader = new UnbufferedIO.SequentialReader(prefix + "-next08"); var last08Reader = new UnbufferedIO.SequentialReader(prefix + "-last08"); var next16Buffer = new ushort[] { }; var next08Buffer = new byte[] { }; var last08Buffer = new byte[] { }; var iDegrees = new uint[106000000]; var oDegrees = new uint[106000000]; var edgeCount = 0L; for (int i = 0; i < high32MetaData.Length; i += 2) { var high32value = high32MetaData[i]; var high32count = (int)high32MetaData[i + 1]; if (next16Buffer.Length < 2 * high32count) { next16Buffer = new ushort[2 * high32count]; } var readNext16 = next16Reader.Read <ushort>(next16Buffer, 0, 2 * high32count); if (readNext16 != 2 * high32count) { Console.WriteLine("Read error, next16; requested {0}, read {1}", 2 * high32count, readNext16); } var next16count = 0; for (int j = 0; j < high32count; j++) { next16count += (int)(next16Buffer[2 * j + 1] == 0 ? ((uint)ushort.MaxValue) + 1 : next16Buffer[2 * j + 1]); } if (next08Buffer.Length < 2 * next16count) { next08Buffer = new byte[2 * next16count]; } var readNext08 = next08Reader.Read <byte>(next08Buffer, 0, 2 * next16count); if (readNext08 != 2 * next16count) { Console.WriteLine("Read error, next08; requested {0}, read {1}", 2 * next16count, readNext08); } var next08count = 0; for (int k = 0; k < next16count; k++) { next08count += (int)(next08Buffer[2 * k + 1] == 0 ? ((uint)byte.MaxValue) + 1 : next08Buffer[2 * k + 1]); } if (last08Buffer.Length < next08count) { last08Buffer = new byte[next08count]; } var readLast08 = last08Reader.Read <byte>(last08Buffer, 0, next08count); if (readLast08 != next08count) { Console.WriteLine("Read error, last08; requested {0}, read {1}", next08count, readLast08); } var next16Offset = 0; var next08Offset = 0; var last08Offset = 0; // do work for all these dudes var xHigh32 = (high32value & 0xFFFF0000) << 0; var yHigh32 = (high32value & 0x0000FFFF) << 16; for (int j = 0; j < high32count; j++) { var xNext16 = xHigh32 + ((next16Buffer[next16Offset + 2 * j] & 0xFF00) << 0); var yNext16 = yHigh32 + ((next16Buffer[next16Offset + 2 * j] & 0x00FF) << 8); next16count = next16Buffer[next16Offset + 2 * j + 1]; if (next16count == 0) { next16count = ((int)ushort.MaxValue) + 1; } for (int k = 0; k < next16count; k++) { var xNext08 = xNext16 + ((next08Buffer[next08Offset + 2 * k] & 0xF0) << 0); var yNext08 = yNext16 + ((next08Buffer[next08Offset + 2 * k] & 0x0F) << 4); next08count = next08Buffer[next08Offset + 2 * k + 1]; if (next08count == 0) { next08count = ((int)byte.MaxValue) + 1; } for (int l = 0; l < next08count; l++) { var x = xNext08 + ((last08Buffer[last08Offset + l] & 0xF0) >> 4); var y = yNext08 + ((last08Buffer[last08Offset + l] & 0x0F) >> 0); iDegrees[y]++; oDegrees[x]++; edgeCount++; } last08Offset += next08count; } next08Offset += 2 * next16count; } } Console.WriteLine("{1}\tProcessed\t{0} edges", edgeCount, stopwatch.Elapsed); next16Reader.Dispose(); next08Reader.Dispose(); last08Reader.Dispose(); var graph = new FileGraphScanner(prefix); graph.ForEach((vertex, degree, offset, neighbors) => { for (int i = 0; i < degree; i++) { iDegrees[neighbors[offset + i]]--; oDegrees[vertex]--; } }); var iErrors = iDegrees.Count(x => x > 0); var oErrors = oDegrees.Count(x => x > 0); Console.WriteLine("iErrors: {0}\toErrors: {1}", iErrors, oErrors); Console.WriteLine("{0}\tCounted {1} edges", stopwatch.Elapsed, edgeCount); }
public static void Scan(this string prefix, Action <uint, uint, int, int, byte[]> perEdgeAction) { var high32MetaData = UnbufferedIO.ReadFile <uint>(prefix + "-high32"); var next16Reader = new UnbufferedIO.SequentialReader(prefix + "-next16"); var next08Reader = new UnbufferedIO.SequentialReader(prefix + "-next08"); var last08Reader = new UnbufferedIO.SequentialReader(prefix + "-last08"); var next16Buffer = new ushort[] { }; var next08Buffer = new byte[] { }; var last08Buffer = new byte[] { }; for (int i = 0; i < high32MetaData.Length; i += 2) { var high32value = high32MetaData[i]; var high32count = (int)high32MetaData[i + 1]; if (next16Buffer.Length < 2 * high32count) { next16Buffer = new ushort[2 * high32count]; } var readNext16 = next16Reader.Read <ushort>(next16Buffer, 0, 2 * high32count); if (readNext16 != 2 * high32count) { Console.WriteLine("Read error, next16; requested {0}, read {1}", 2 * high32count, readNext16); } var next16count = 0; for (int j = 0; j < high32count; j++) { next16count += (int)(next16Buffer[2 * j + 1] == 0 ? ((uint)ushort.MaxValue) + 1 : next16Buffer[2 * j + 1]); } if (next08Buffer.Length < 2 * next16count) { next08Buffer = new byte[2 * next16count]; } var readNext08 = next08Reader.Read <byte>(next08Buffer, 0, 2 * next16count); if (readNext08 != 2 * next16count) { Console.WriteLine("Read error, next08; requested {0}, read {1}", 2 * next16count, readNext08); } var next08count = 0; for (int k = 0; k < next16count; k++) { next08count += (int)(next08Buffer[2 * k + 1] == 0 ? ((uint)byte.MaxValue) + 1 : next08Buffer[2 * k + 1]); } if (last08Buffer.Length < next08count) { last08Buffer = new byte[next08count]; } var readLast08 = last08Reader.Read <byte>(last08Buffer, 0, next08count); if (readLast08 != next08count) { Console.WriteLine("Read error, last08; requested {0}, read {1}", next08count, readLast08); } var next16Offset = 0; var next08Offset = 0; var last08Offset = 0; // do work for all these dudes var xHigh32 = (high32value & 0xFFFF0000) << 0; var yHigh32 = (high32value & 0x0000FFFF) << 16; for (int j = 0; j < high32count; j++) { var xNext16 = xHigh32 + (uint)((next16Buffer[next16Offset + 2 * j] & 0xFF00) << 0); var yNext16 = yHigh32 + (uint)((next16Buffer[next16Offset + 2 * j] & 0x00FF) << 8); next16count = next16Buffer[next16Offset + 2 * j + 1]; if (next16count == 0) { next16count = ((int)ushort.MaxValue) + 1; } for (int k = 0; k < next16count; k++) { var xNext08 = xNext16 + (uint)((next08Buffer[next08Offset + 2 * k] & 0xF0) << 0); var yNext08 = yNext16 + (uint)((next08Buffer[next08Offset + 2 * k] & 0x0F) << 4); next08count = next08Buffer[next08Offset + 2 * k + 1]; if (next08count == 0) { next08count = ((int)byte.MaxValue) + 1; } perEdgeAction(xNext08, yNext08, next08count, last08Offset, last08Buffer); last08Offset += next08count; } next08Offset += 2 * next16count; } } next16Reader.Dispose(); next08Reader.Dispose(); last08Reader.Dispose(); }