/// <summary>
/// Add a taxon to the data identifier list.
/// Data type is needed to distinguish between taxon and host.
/// Default is taxon.
/// </summary>
/// <param name='taxon'>A taxon.</param>
/// <param name='dataType'>
/// Data type is needed to distinguish between taxon and host.
/// Default is taxon.
/// </param>
public void Add(Taxon taxon, DataTypeId dataType)
{
if (taxon.IsNotNull())
{
Add(new DataIdentifier(taxon, dataType));
}
}
/// <summary>
/// Creates a species fact instance with no data from web service.
/// </summary>
/// <param name="taxon">Taxon object of the species fact</param>
/// <param name="individualCategory">Individual category object of the species fact</param>
/// <param name="factor">Factor object of the species fact</param>
/// <param name="host">Host taxon object of the species fact</param>
/// <param name="period">Period object of the species fact</param>
public SpeciesFact(
Taxon taxon,
IndividualCategory individualCategory,
Factor factor,
Taxon host,
Period period)
: base(-1, -1)
{
Int32 fieldIndex;
_fields = null;
_substantialFields = null;
_mainField = null;
_hasId = false;
_identifier = SpeciesFactManager.GetSpeciesFactIdentifier(
taxon,
individualCategory,
factor,
host,
period);
_taxon = taxon;
_individualCategory = individualCategory;
_factor = factor;
_host = host;
_hasHost = _host.IsNotNull();
_period = period;
_hasPeriod = _period.IsNotNull();
_quality = SpeciesFactManager.GetDefaultSpeciesFactQuality();
_oldQuality = _quality;
_reference = null;
_oldReference = null;
_updateUserFullName = null;
_updateDate = DateTime.MinValue;
_hasUpdateDate = false;
if (!_factor.FactorUpdateMode.IsHeader)
{
_fields = new SpeciesFactFieldList();
_substantialFields = new SpeciesFactFieldList();
_fieldArray = new SpeciesFactField[FactorManager.GetFactorFieldMaxCount()];
for (fieldIndex = 0; fieldIndex < FactorManager.GetFactorFieldMaxCount(); fieldIndex++)
{
_fieldArray[fieldIndex] = null;
}
foreach (FactorField factorField in _factor.FactorDataType.Fields)
{
SpeciesFactField field;
field = new SpeciesFactField(this, factorField, false, null);
_fields.Add(field);
_fieldArray[field.Index] = field;
if (factorField.IsSubstantial)
{
_substantialFields.Add(field);
}
if (factorField.IsMain)
{
_mainField = field;
}
}
}
_shouldBeSaved = AllowUpdate;
}
/// <summary>
/// Get string with taxonomic information.
/// </summary>
/// <returns>String with taxonomic information.</returns>
private String GetAutomaticTaxonomicString()
{
StringBuilder text;
if (_taxonomicParagraphSpeciesFact.IsNotNull() &&
(_taxonomicParagraphSpeciesFact.Quality.Id == (Int32)SpeciesFactQualityId.VerryGood) &&
_taxonomicParagraphSpeciesFact.Field5.HasValue)
{
return(_taxonomicParagraphSpeciesFact.Field5.StringValue);
}
text = new StringBuilder();
if (_taxon.IsNotNull())
{
_italicStringsInAutomaticTaxonomicParagraph.Clear();
TaxonSearchCriteria criteria = new TaxonSearchCriteria();
List <Int32> taxonIds = new List <Int32>();
taxonIds.Add(_taxon.Id);
criteria.RestrictSearchToTaxonIds = taxonIds;
criteria.RestrictReturnToScope = WebService.TaxonSearchScope.AllParentTaxa;
TaxonList parentTaxa = TaxonManager.GetTaxaBySearchCriteria(criteria);
TaxonList suitableParents = new TaxonList();
foreach (Taxon parent in parentTaxa)
{
if ((parent.TaxonType.Id == (Int32)(TaxonTypeId.Kingdom)) ||
(parent.TaxonType.Id == (Int32)(TaxonTypeId.Phylum)) ||
(parent.TaxonType.Id == (Int32)(TaxonTypeId.Class)) ||
(parent.TaxonType.Id == (Int32)(TaxonTypeId.Order)) ||
(parent.TaxonType.Id == (Int32)(TaxonTypeId.Family)))
{
if (!(parent.Id == (Int32)TaxonId.Dummy))
{
suitableParents.Add(parent);
}
}
}
Int32 startFromIndex = suitableParents.Count - 3;
if (startFromIndex < 0)
{
startFromIndex = 0;
}
for (Int32 index = startFromIndex; index < suitableParents.Count; index++)
{
if (text.ToString() != String.Empty)
{
text.Append(", ");
}
text.Append(suitableParents[index].TaxonType.Label + " ");
text.Append(suitableParents[index].ScientificName);
//Eventuellt ska denna kodrad tas bort (förslag från Tomas Hallingbäck): Överordnade taxa bör ej vara kursiverade
//Enligt artexperternas diskussion 2010-03-04 ska överordnade vetenskapliga taxonnamn ej kursiveras!
//_italicStringsInAutomaticTaxonomicParagraph.Add(suitableParents[index].ScientificName);
if (suitableParents[index].CommonName.IsNotEmpty())
{
text.Append(" (" + suitableParents[index].CommonName + ")");
}
}
if (text.ToString() != String.Empty)
{
text.Append(", ");
}
text.Append(_taxon.ScientificNameAndAuthor);
_italicStringsInAutomaticTaxonomicParagraph.Add(_taxon.ScientificName);
TaxonNameList Synonyms = new TaxonNameList();
foreach (TaxonName name in _taxon.TaxonNames)
{
if ((name.TaxonNameType.Id == 0) &&
(name.TaxonNameUseType.Id == 0) &&
(!name.IsRecommended) &&
(name.Name != _taxon.ScientificName))
{
_italicStringsInAutomaticTaxonomicParagraph.Add(name.Name);
Synonyms.Add(name);
}
}
if (Synonyms.Count > 0)
{
text.Append(". Syn. ");
for (Int32 itemIndex = 0; itemIndex < Synonyms.Count; itemIndex++)
{
if (itemIndex > 0)
{
if (itemIndex == Synonyms.Count - 1)
{
text.Append(" och ");
}
else
{
text.Append(", ");
}
}
text.Append(Synonyms[itemIndex].Name);
if (Synonyms[itemIndex].Author.IsNotEmpty())
{
text.Append(" " + Synonyms[itemIndex].Author);
}
}
}
if (text.ToString() != String.Empty)
{
text.Append(". ");
}
}
String cleanText = text.ToString().Replace("..", ".");
return(cleanText);
}
/// <summary>
/// Creates a species fact instance with data from web service.
/// </summary>
/// <param name="id">Id of the species fact</param>
/// <param name="sortOrder">Sort order of the species fact</param>
/// <param name="taxonId">Taxon Id of the species fact</param>
/// <param name="individualCategoryId">Individual Category Id of the species fact</param>
/// <param name="factorId">Foctor Id of the species fact</param>
/// <param name="hostId">Taxon Id of the host taxon associated with the species fact</param>
/// <param name="hasHost">Indicates if this species fact has a host.</param>
/// <param name="periodId">Period Id of the species fact</param>
/// <param name="hasPeriod">Indicates if this species fact has a period.</param>
/// <param name="fieldValue1">Field value of field 1 for the species fact</param>
/// <param name="hasFieldValue1">Indicates if field 1 has a value.</param>
/// <param name="fieldValue2">Field value of field 2 for the species fact</param>
/// <param name="hasFieldValue2">Indicates if field 2 has a value.</param>
/// <param name="fieldValue3">Field value of field 3 for the species fact</param>
/// <param name="hasFieldValue3">Indicates if field 3 has a value.</param>
/// <param name="fieldValue4">Field value of field 4 for the species fact</param>
/// <param name="hasFieldValue4">Indicates if field 4 has a value.</param>
/// <param name="fieldValue5">Field value of field 5 for the species fact</param>
/// <param name="hasFieldValue5">Indicates if field 5 has a value.</param>
/// <param name="qualityId">Quality Id of the species fact</param>
/// <param name="referenceId">Reference id of the species fact</param>
/// <param name="updateUserFullName">Full Name of the pdate user of the species fact</param>
/// <param name="updateDate">Update date of the species fact</param>
public SpeciesFact(
Int32 id,
Int32 sortOrder,
Int32 taxonId,
Int32 individualCategoryId,
Int32 factorId,
Int32 hostId,
Boolean hasHost,
Int32 periodId,
Boolean hasPeriod,
Double fieldValue1,
Boolean hasFieldValue1,
Double fieldValue2,
Boolean hasFieldValue2,
Double fieldValue3,
Boolean hasFieldValue3,
String fieldValue4,
Boolean hasFieldValue4,
String fieldValue5,
Boolean hasFieldValue5,
Int32 qualityId,
Int32 referenceId,
String updateUserFullName,
DateTime updateDate)
: base(id, sortOrder)
{
Int32 fieldIndex;
_fields = null;
_substantialFields = null;
_mainField = null;
_hasId = true;
_identifier = SpeciesFactManager.GetSpeciesFactIdentifier(
taxonId,
individualCategoryId,
factorId,
hasHost,
hostId,
hasPeriod,
periodId);
_taxon = TaxonManager.GetTaxon(taxonId, TaxonInformationType.Basic);
_individualCategory = IndividualCategoryManager.GetIndividualCategory(individualCategoryId);
_factor = FactorManager.GetFactor(factorId);
if (hasHost)
{
_host = TaxonManager.GetTaxon(hostId, TaxonInformationType.Basic);
_hasHost = hasHost;
}
else
{
if (_factor.IsTaxonomic)
{
_host = TaxonManager.GetTaxon(0, TaxonInformationType.Basic);;
}
else
{
_host = null;
}
_hasHost = _host.IsNotNull();
}
if (hasPeriod)
{
_period = PeriodManager.GetPeriod(periodId);
}
else
{
_period = null;
}
_hasPeriod = hasPeriod;
_quality = SpeciesFactManager.GetSpeciesFactQuality(qualityId);
_oldQuality = _quality;
_reference = ReferenceManager.GetReference(referenceId);
_oldReference = _reference;
_updateUserFullName = updateUserFullName;
_updateDate = updateDate;
_hasUpdateDate = true;
if (!_factor.FactorUpdateMode.IsHeader)
{
_fields = new SpeciesFactFieldList();
_substantialFields = new SpeciesFactFieldList();
_fieldArray = new SpeciesFactField[FactorManager.GetFactorFieldMaxCount()];
for (fieldIndex = 0; fieldIndex < FactorManager.GetFactorFieldMaxCount(); fieldIndex++)
{
_fieldArray[fieldIndex] = null;
}
foreach (FactorField factorField in _factor.FactorDataType.Fields)
{
Boolean hasFieldValue;
SpeciesFactField field;
Object fieldValue;
switch (factorField.Index)
{
case 0:
fieldValue = fieldValue1;
hasFieldValue = hasFieldValue1;
break;
case 1:
fieldValue = fieldValue2;
hasFieldValue = hasFieldValue2;
break;
case 2:
fieldValue = fieldValue3;
hasFieldValue = hasFieldValue3;
break;
case 3:
fieldValue = fieldValue4;
hasFieldValue = hasFieldValue4;
break;
case 4:
fieldValue = fieldValue5;
hasFieldValue = hasFieldValue5;
break;
default:
throw new Exception("Unknown data field!");
}
field = new SpeciesFactField(this, factorField, hasFieldValue, fieldValue);
_fields.Add(field);
_fieldArray[field.Index] = field;
if (factorField.IsSubstantial)
{
_substantialFields.Add(field);
}
if (factorField.IsMain)
{
_mainField = field;
}
}
}
_shouldBeSaved = AllowUpdate;
}
/// <summary>
/// Get string with taxonomic information.
/// </summary>
/// <returns>String with taxonomic information.</returns>
private String GetAutomaticTaxonomicString()
{
StringBuilder text;
if (_taxonomicParagraphSpeciesFact.IsNotNull() &&
(_taxonomicParagraphSpeciesFact.Quality.Id == (Int32)SpeciesFactQualityId.VerryGood) &&
_taxonomicParagraphSpeciesFact.Field5.HasValue)
{
return(_taxonomicParagraphSpeciesFact.Field5.StringValue);
}
text = new StringBuilder();
if (_taxon.IsNotNull())
{
_italicStringsInAutomaticTaxonomicParagraph.Clear();
Int32 startFromIndex = ParentTaxa.Count - 3;
if (startFromIndex < 0)
{
startFromIndex = 0;
}
for (Int32 index = startFromIndex; index < ParentTaxa.Count; index++)
{
if (text.ToString() != String.Empty)
{
text.Append(", ");
}
text.Append(ParentTaxa[index].TaxonType.Label + " ");
text.Append(ParentTaxa[index].ScientificName);
//Eventuellt ska denna kodrad tas bort (förslag från Tomas Hallingbäck): Överordnade taxa bör ej vara kursiverade
//Enligt artexperternas diskussion 2010-03-04 ska överordnade vetenskapliga taxonnamn ej kursiveras!
//_italicStringsInAutomaticTaxonomicParagraph.Add(suitableParents[index].ScientificName);
if (ParentTaxa[index].CommonName.IsNotEmpty())
{
text.Append(" (" + ParentTaxa[index].CommonName + ")");
}
}
if (text.ToString() != String.Empty)
{
text.Append(", ");
}
text.Append(_taxon.ScientificNameAndAuthor);
_italicStringsInAutomaticTaxonomicParagraph.Add(_taxon.ScientificName);
if (Synonyms.Count > 0)
{
text.Append(". Syn. ");
for (Int32 itemIndex = 0; itemIndex < Synonyms.Count; itemIndex++)
{
if (itemIndex > 0)
{
if (itemIndex == Synonyms.Count - 1)
{
text.Append(" och ");
}
else
{
text.Append(", ");
}
}
text.Append(Synonyms[itemIndex].Name);
if (Synonyms[itemIndex].Author.IsNotEmpty())
{
text.Append(" " + Synonyms[itemIndex].Author);
}
}
}
if (text.ToString() != String.Empty)
{
text.Append(". ");
}
}
String cleanText = text.ToString().Replace("..", ".");
return(cleanText);
}