/// <summary>
/// Perform migration between two populations.
/// </summary>
///
/// <param name="anotherPopulation">Population to do migration with.</param>
/// <param name="numberOfMigrants">Number of chromosomes from each population to migrate.</param>
/// <param name="migrantsSelector">Selection algorithm used to select chromosomes to migrate.</param>
///
/// <remarks><para>The method performs migration between two populations - current and the
/// <paramref name="anotherPopulation">specified one</paramref>. During migration
/// <paramref name="numberOfMigrants">specified number</paramref> of chromosomes is choosen from
/// each population using <paramref name="migrantsSelector">specified selection algorithms</paramref>
/// and put into another population replacing worst members there.</para></remarks>
///
public void Migrate(Population anotherPopulation, int numberOfMigrants, ISelectionMethod migrantsSelector)
{
int currentSize = this.size;
int anotherSize = anotherPopulation.Size;
// create copy of current population
List<IChromosome> currentCopy = new List<IChromosome>();
for (int i = 0; i < currentSize; i++)
{
currentCopy.Add(population[i].Clone());
}
// create copy of another population
List<IChromosome> anotherCopy = new List<IChromosome>();
for (int i = 0; i < anotherSize; i++)
{
anotherCopy.Add(anotherPopulation.population[i].Clone());
}
// apply selection to both populations' copies - select members to migrate
migrantsSelector.ApplySelection(currentCopy, numberOfMigrants);
migrantsSelector.ApplySelection(anotherCopy, numberOfMigrants);
// sort original populations, so the best chromosomes are in the beginning
population.Sort();
anotherPopulation.population.Sort();
// remove worst chromosomes from both populations to free space for new members
population.RemoveRange(currentSize - numberOfMigrants, numberOfMigrants);
anotherPopulation.population.RemoveRange(anotherSize - numberOfMigrants, numberOfMigrants);
// put migrants to corresponding populations
population.AddRange(anotherCopy);
anotherPopulation.population.AddRange(currentCopy);
// find best chromosomes in each population
FindBestChromosome();
anotherPopulation.FindBestChromosome();
}
// Worker thread
void SearchSolution()
{
// constants
double[] constants = new double[10] { 1, 2, 3, 5, 7, 11, 13, 17, 19, 23 };
// create fitness function
TimeSeriesPredictionFitness fitness = new TimeSeriesPredictionFitness(
data, windowSize, predictionSize, constants);
// create gene function
IGPGene gene = (functionsSet == 0) ?
(IGPGene)new SimpleGeneFunction(windowSize + constants.Length) :
(IGPGene)new ExtendedGeneFunction(windowSize + constants.Length);
// create population
Population population = new Population(populationSize,
(geneticMethod == 0) ?
(IChromosome)new GPTreeChromosome(gene) :
(IChromosome)new GEPChromosome(gene, headLength),
fitness,
(selectionMethod == 0) ? (ISelectionMethod)new EliteSelection() :
(selectionMethod == 1) ? (ISelectionMethod)new RankSelection() :
(ISelectionMethod)new RouletteWheelSelection()
);
// iterations
int i = 1;
// solution array
int solutionSize = data.Length - windowSize;
double[,] solution = new double[solutionSize, 2];
double[] input = new double[windowSize + constants.Length];
// calculate X values to be used with solution function
for (int j = 0; j < solutionSize; j++)
{
solution[j, 0] = j + windowSize;
}
// prepare input
Array.Copy(constants, 0, input, windowSize, constants.Length);
// loop
while (!needToStop)
{
// run one epoch of genetic algorithm
population.RunEpoch();
try
{
// get best solution
string bestFunction = population.BestChromosome.ToString();
// calculate best function and prediction error
double learningError = 0.0;
double predictionError = 0.0;
// go through all the data
for (int j = 0, n = data.Length - windowSize; j < n; j++)
{
// put values from current window as variables
for (int k = 0, b = j + windowSize - 1; k < windowSize; k++)
{
input[k] = data[b - k];
}
// evalue the function
solution[j, 1] = PolishExpression.Evaluate(bestFunction, input);
// calculate prediction error
if (j >= n - predictionSize)
{
predictionError += Math.Abs(solution[j, 1] - data[windowSize + j]);
}
else
{
learningError += Math.Abs(solution[j, 1] - data[windowSize + j]);
}
}
// update solution on the chart
chart.UpdateDataSeries("solution", solution);
// set current iteration's info
SetText(currentIterationBox, i.ToString());
SetText(currentLearningErrorBox, learningError.ToString("F3"));
SetText(currentPredictionErrorBox, predictionError.ToString("F3"));
}
catch
{
// remove any solutions from chart in case of any errors
chart.UpdateDataSeries("solution", null);
}
// increase current iteration
i++;
//
if ((iterations != 0) && (i > iterations))
break;
}
// show solution
SetText(solutionBox, population.BestChromosome.ToString());
for (int j = windowSize, k = 0, n = data.Length; j < n; j++, k++)
{
AddSubItem(dataList, j, solution[k, 1].ToString());
}
// enable settings controls
EnableControls(true);
}
// Worker thread
void SearchSolution()
{
// create fitness function
TSPFitnessFunction fitnessFunction = new TSPFitnessFunction(map);
// create population
Population population = new Population(populationSize,
(greedyCrossover) ? new TSPChromosome(map) : new PermutationChromosome(citiesCount),
fitnessFunction,
(selectionMethod == 0) ? (ISelectionMethod)new EliteSelection() :
(selectionMethod == 1) ? (ISelectionMethod)new RankSelection() :
(ISelectionMethod)new RouletteWheelSelection()
);
// iterations
int i = 1;
// path
double[,] path = new double[citiesCount + 1, 2];
// loop
while (!needToStop)
{
// run one epoch of genetic algorithm
population.RunEpoch();
// display current path
ushort[] bestValue = ((PermutationChromosome)population.BestChromosome).Value;
for (int j = 0; j < citiesCount; j++)
{
path[j, 0] = map[bestValue[j], 0];
path[j, 1] = map[bestValue[j], 1];
}
path[citiesCount, 0] = map[bestValue[0], 0];
path[citiesCount, 1] = map[bestValue[0], 1];
mapControl.UpdateDataSeries("path", path);
// set current iteration's info
SetText(currentIterationBox, i.ToString());
SetText(pathLengthBox, fitnessFunction.PathLength(population.BestChromosome).ToString());
// increase current iteration
i++;
//
if ((iterations != 0) && (i > iterations))
break;
}
// enable settings controls
EnableControls(true);
}
// Worker thread
void SearchSolution()
{
// create population
Population population = new Population(populationSize,
new BinaryChromosome(chromosomeLength),
userFunction,
(selectionMethod == 0) ? (ISelectionMethod)new EliteSelection() :
(selectionMethod == 1) ? (ISelectionMethod)new RankSelection() :
(ISelectionMethod)new RouletteWheelSelection()
);
// set optimization mode
userFunction.Mode = (optimizationMode == 0) ?
OptimizationFunction1D.Modes.Maximization :
OptimizationFunction1D.Modes.Minimization;
// iterations
int i = 1;
// solution
double[,] data = new double[(showOnlyBest) ? 1 : populationSize, 2];
// loop
while (!needToStop)
{
// run one epoch of genetic algorithm
population.RunEpoch();
// show current solution
if (showOnlyBest)
{
data[0, 0] = userFunction.Translate(population.BestChromosome);
data[0, 1] = userFunction.OptimizationFunction(data[0, 0]);
}
else
{
for (int j = 0; j < populationSize; j++)
{
data[j, 0] = userFunction.Translate(population[j]);
data[j, 1] = userFunction.OptimizationFunction(data[j, 0]);
}
}
chart.UpdateDataSeries("solution", data);
// set current iteration's info
SetText(currentIterationBox, i.ToString());
SetText(currentValueBox, userFunction.Translate(population.BestChromosome).ToString("F3"));
// increase current iteration
i++;
//
if ((iterations != 0) && (i > iterations))
break;
}
// enable settings controls
EnableControls(true);
}
// Worker thread
void SearchSolution()
{
// create fitness function
SymbolicRegressionFitness fitness = new SymbolicRegressionFitness(data, new double[] { 1, 2, 3, 5, 7 });
// create gene function
IGPGene gene = (functionsSet == 0) ?
(IGPGene)new SimpleGeneFunction(6) :
(IGPGene)new ExtendedGeneFunction(6);
// create population
Population population = new Population(populationSize,
(geneticMethod == 0) ?
(IChromosome)new GPTreeChromosome(gene) :
(IChromosome)new GEPChromosome(gene, 15),
fitness,
(selectionMethod == 0) ? (ISelectionMethod)new EliteSelection() :
(selectionMethod == 1) ? (ISelectionMethod)new RankSelection() :
(ISelectionMethod)new RouletteWheelSelection()
);
// iterations
int i = 1;
// solution array
double[,] solution = new double[50, 2];
double[] input = new double[6] { 0, 1, 2, 3, 5, 7 };
// calculate X values to be used with solution function
for (int j = 0; j < 50; j++)
{
solution[j, 0] = chart.RangeX.Min + (double)j * chart.RangeX.Length / 49;
}
// loop
while (!needToStop)
{
// run one epoch of genetic algorithm
population.RunEpoch();
try
{
// get best solution
string bestFunction = population.BestChromosome.ToString();
// calculate best function
for (int j = 0; j < 50; j++)
{
input[0] = solution[j, 0];
solution[j, 1] = PolishExpression.Evaluate(bestFunction, input);
}
chart.UpdateDataSeries("solution", solution);
// calculate error
double error = 0.0;
for (int j = 0, k = data.GetLength(0); j < k; j++)
{
input[0] = data[j, 0];
error += Math.Abs(data[j, 1] - PolishExpression.Evaluate(bestFunction, input));
}
// set current iteration's info
SetText(currentIterationBox, i.ToString());
SetText(currentErrorBox, error.ToString("F3"));
}
catch
{
// remove any solutions from chart in case of any errors
chart.UpdateDataSeries("solution", null);
}
// increase current iteration
i++;
//
if ((iterations != 0) && (i > iterations))
break;
}
// show solution
SetText(solutionBox, population.BestChromosome.ToString());
// enable settings controls
EnableControls(true);
}
/// <summary>
/// Runs learning epoch.
/// </summary>
///
/// <param name="input">Array of input vectors.</param>
/// <param name="output">Array of output vectors.</param>
///
/// <returns>Returns summary squared learning error for the entire epoch.</returns>
///
/// <remarks><para><note>While running the neural network's learning process, it is required to
/// pass the same <paramref name="input"/> and <paramref name="output"/> values for each
/// epoch. On the very first run of the method it will initialize evolutionary fitness
/// function with the given input/output. So, changing input/output in middle of the learning
/// process, will break it.</note></para></remarks>
///
public double RunEpoch(double[][] input, double[][] output)
{
Debug.Assert(input.Length > 0);
Debug.Assert(output.Length > 0);
Debug.Assert(input.Length == output.Length);
Debug.Assert(network.InputsCount == input.Length);
// check if it is a first run and create population if so
if (population == null)
{
// sample chromosome
DoubleArrayChromosome chromosomeExample = new DoubleArrayChromosome(
chromosomeGenerator, mutationMultiplierGenerator, mutationAdditionGenerator,
numberOfNetworksWeights);
// create population ...
population = new Population(populationSize, chromosomeExample,
new EvolutionaryFitness(network, input, output), selectionMethod);
// ... and configure it
population.CrossoverRate = crossOverRate;
population.MutationRate = mutationRate;
population.RandomSelectionPortion = randomSelectionRate;
}
// run genetic epoch
population.RunEpoch();
// get best chromosome of the population
DoubleArrayChromosome chromosome = (DoubleArrayChromosome)population.BestChromosome;
double[] chromosomeGenes = chromosome.Value;
// put best chromosome's value into neural network's weights
int v = 0;
for (int i = 0; i < network.Layers.Length; i++)
{
Layer layer = network.Layers[i];
for (int j = 0; j < layer.Neurons.Length; j++)
{
ActivationNeuron neuron = layer.Neurons[j] as ActivationNeuron;
for (int k = 0; k < neuron.Weights.Length; k++)
{
neuron.Weights[k] = chromosomeGenes[v++];
}
neuron.Threshold = chromosomeGenes[v++];
}
}
Debug.Assert(v == numberOfNetworksWeights);
return 1.0 / chromosome.Fitness;
}