public static List <aim_dotnet.Annotation> LoadAimAnnotations(IEnumerable <string> studyInstanceUids)
{
List <aim_dotnet.Annotation> annotationList = new List <aim_dotnet.Annotation>();
using (aim_dotnet.DcmModel dcmModel = new aim_dotnet.DcmModel())
{
foreach (string studyInstanceUID in studyInstanceUids)
{
AimInstanceDictionary aimInstanceDictionary = GetAimInstanceDictionaryForStudy(studyInstanceUID);
List <AimSopInstanceInformation> annotationSopsInfo = aimInstanceDictionary[studyInstanceUID];
if (annotationSopsInfo == null)
{
continue;
}
foreach (AimSopInstanceInformation information in annotationSopsInfo)
{
try
{
annotationList.AddRange(dcmModel.ReadAnnotationsFromFile(information.InstanceFileName));
}
catch (Exception ex)
{
Platform.Log(LogLevel.Error, ex);
}
}
}
}
return(annotationList.Count > 0 ? annotationList : null);
}
// Retrieves an informational dictionary for all available annotations for a given study
public static AimInstanceDictionary GetAimInstanceDictionaryForStudy(string studyInstanceUID)
{
AimInstanceDictionary annotationDictionary = new AimInstanceDictionary();
StudyItemList studyAnnotations = RetrieveAnnotationsInformationForStudy(studyInstanceUID); // TODO - switch to using SR IOD when we have it
if (studyAnnotations == null || studyAnnotations.Count == 0)
{
return(annotationDictionary);
}
using (IDataStoreReader reader = DataAccessLayer.GetIDataStoreReader())
{
foreach (StudyItem studyItem in studyAnnotations)
{
ClearCanvas.Dicom.DataStore.Study study = reader.GetStudy(studyItem.StudyInstanceUid) as ClearCanvas.Dicom.DataStore.Study;
if (study != null)
{
IEnumerable <ISeries> allSeries = study.GetSeries();
foreach (ISeries series in allSeries)
{
if (series != null && series.Modality == "SR")
{
IEnumerable <ISopInstance> sopInstances = series.GetSopInstances();
foreach (ISopInstance sopInstance in sopInstances)
{
if (sopInstance != null)
{
DicomUri fileUri = sopInstance.GetLocationUri();
if (fileUri.IsFile)
{
annotationDictionary.Add(study.StudyInstanceUid, series.SeriesInstanceUid, sopInstance.SopInstanceUid, fileUri.LocalDiskPath);
}
}
}
}
}
}
}
// TODO:
// 1. Find and load all annotations (read-only?)
// LocalDataStoreActivityMonitor.Instance.
}
return(annotationDictionary);
}
public static AimInstanceDictionary GetAimInstanceDictionaryForStudy(string studyInstanceUID)
{
var annotationDictionary = new AimInstanceDictionary();
var studyAnnotations = RetrieveAnnotationsInformationForStudy(studyInstanceUID);
if (studyAnnotations == null || studyAnnotations.Count == 0)
{
return(annotationDictionary);
}
using (var reader = DataAccessLayer.GetIDataStoreReader())
{
foreach (var studyItem in studyAnnotations)
{
var study = reader.GetStudy(studyItem.StudyInstanceUid) as ClearCanvas.Dicom.DataStore.Study;
if (study != null)
{
var allSeries = study.GetSeries();
foreach (var series in allSeries)
{
if (series != null && series.Modality == "SR")
{
var sopInstances = series.GetSopInstances();
foreach (var sopInstance in sopInstances)
{
if (sopInstance != null)
{
var fileUri = sopInstance.GetLocationUri();
if (fileUri.IsFile)
{
annotationDictionary.Add(study.StudyInstanceUid, series.SeriesInstanceUid, sopInstance.SopInstanceUid, fileUri.LocalDiskPath);
}
}
}
}
}
}
}
}
return(annotationDictionary);
}
