protected void RegisterAccept(object sender, EventArgs e)
{
int i = combobox_hyperscanning.Active;
demo[i].set("SubjID", comboboxentry_subjID.ActiveText);
demo[i].set("Investigator", combobox_investigators.ActiveText);
demo[i].set("Study", combobox_studies.ActiveText);
demo[i].set("Gender", demo_gender.ActiveText);
demo[i].set("Group", demo_group.Text);
demo[i].set("Age", demo_age.Text);
demo[i].set("Instrument", MainClass.win.settings.SYSTEM);
demo[i].set("head_circumference", demo_headsize.Text);
demo[i].set("Technician", demo_tecnician.Text);
demo[i].set("comments", demo_comments.Buffer.Text);
// Add channels for Optical Density, HbO2, and HbR
int cnt = probe.ChannelMap.Length;
nirs.ChannelMap[] ChannelMap = new nirs.ChannelMap[cnt * 2 + 2 * cnt / probe.numWavelengths];
for (int ii = 0; ii < cnt; ii++)
{
ChannelMap[ii] = probe.ChannelMap[ii];
}
for (int ii = 0; ii < cnt; ii++)
{
ChannelMap[ii + cnt] = probe.ChannelMap[ii];
ChannelMap[ii + cnt].datasubtype = String.Format("ΔOD {0}nm", ChannelMap[ii].wavelength);
}
for (int ii = 0; ii < cnt / probe.numWavelengths; ii++)
{
ChannelMap[ii + 2 * cnt] = probe.ChannelMap[ii];
ChannelMap[ii + 2 * cnt].datasubtype = "HbO2";
}
for (int ii = cnt / probe.numWavelengths; ii < cnt; ii++)
{
ChannelMap[ii + 2 * cnt] = probe.ChannelMap[ii];
ChannelMap[ii + 2 * cnt].datasubtype = "Hb";
}
probe.ChannelMap = ChannelMap;
for (int dId = 0; dId < MainClass.devices.Length; dId++)
{
nirs.core.Data data = new nirs.core.Data();
data.demographics = demo[dId];
data.demographics.set("Investigator", combobox_investigators.ActiveText);
data.demographics.set("Study", combobox_studies.ActiveText);
data.demographics.set("Instrument", MainClass.win.settings.SYSTEM);
DateTime now = DateTime.Now;
data.demographics.set("scan_date", now.ToString("F"));
data.probe = probe.Clone();
data.probe.measlistAct = new bool[data.probe.ChannelMap.Length];
for (int ii = 0; ii < data.probe.ChannelMap.Length; ii++)
{
data.probe.measlistAct[ii] = true;
}
Gdk.Color[] cmap = new Gdk.Color[data.probe.ChannelMap.Length];
for (int ii = 0; ii < data.probe.numChannels; ii++)
{
cmap[ii] = data.probe.colormap[ii];
cmap[data.probe.numChannels + ii] = data.probe.colormap[ii];
cmap[data.probe.numChannels * 2 + ii] = data.probe.colormap[ii];
}
data.probe.colormap = cmap;
Gtk.ListStore ClearList = new Gtk.ListStore(typeof(string));
MainClass.win._handles.whichdata.Model = ClearList;
List <string> datatypes = new List <string>();
for (int ii = 0; ii < data.probe.ChannelMap.Length; ii++)
{
datatypes.Add(data.probe.ChannelMap[ii].datasubtype);
}
datatypes = datatypes.Distinct().ToList();
foreach (string s in datatypes)
{
MainClass.win._handles.whichdata.AppendText(s);
}
MainClass.win._handles.whichdata.Active = 0;
MainClass.win.nirsdata.Add(data);
}
// Save the tmp file for quick reload
string path = System.IO.Path.GetDirectoryName(Assembly.GetEntryAssembly().Location);
path = System.IO.Path.Combine(path, "LastSettings.xml");
XmlWriterSettings settings = new XmlWriterSettings();
settings.Indent = true;
settings.IndentChars = (" ");
settings.CloseOutput = true;
settings.OmitXmlDeclaration = true;
using (XmlWriter writer = XmlWriter.Create(path, settings))
{
writer.WriteStartElement("settings");
writer.WriteElementString("probefile", probefilename);
writer.WriteElementString("Investigator", (string)demo[i].get("Investigator"));
writer.WriteElementString("Study", (string)demo[i].get("Study"));
writer.WriteEndElement();
writer.Flush();
}
MainClass.win.dataLSL = new LSL.liblsl.StreamOutlet[MainClass.devices.Length];
for (int ii = 0; ii < MainClass.devices.Length; ii++)
{
int fs = MainClass.devices[ii].GetSampleRate();
string name = string.Format("NIRSRecordIRData_{0}", ii + 1);
LSL.liblsl.StreamInfo info = new LSL.liblsl.StreamInfo(name, "NIRS", MainClass.win.nirsdata[ii].probe.numChannels,
(double)fs, LSL.liblsl.channel_format_t.cf_int32);
MainClass.win.dataLSL[ii] = new LSL.liblsl.StreamOutlet(info);
}
MainClass.win.EnableControls(true);
MainClass.win.ShowAll();
MainClass.win._handles.SDGplot.QueueDraw();
Destroy();
}
public nirs.core.Data GetNewData(nirs.core.Data data, double dt = 0)
{
int nsamples = 0;
double fs;
switch (devicetype)
{
case 0:
nsamples = ((NIRSDAQ.Instrument.Devices.Simulator)device).SamplesAvaliable();
fs = ((NIRSDAQ.Instrument.Devices.Simulator)device).getsamplerate();
for (int i = 0; i < nsamples; i++)
{
double[] d = ((NIRSDAQ.Instrument.Devices.Simulator)device).Getdata();
for (int j = 0; j < d.Length; j++)
{
data.data[j].Add(d[j]);
}
double time = data.time.Count / fs + dt;
if (_info.numAux > 0)
{
double[] aux = ((NIRSDAQ.Instrument.Devices.Simulator)device).GetdataAux();
for (int j = 0; j < aux.Length; j++)
{
data.auxillaries[j].data.Add(aux[j]);
data.auxillaries[j].time.Add(time);
}
}
data.time.Add(time);
data.numsamples = data.time.Count;
}
break;
case 1:
nsamples = ((NIRSDAQ.Instrument.Devices.TechEn.BTnirs)device).SamplesAvaliable();
fs = ((NIRSDAQ.Instrument.Devices.TechEn.BTnirs)device).getsamplerate();
for (int i = 0; i < nsamples; i++)
{
if (((NIRSDAQ.Instrument.Devices.TechEn.BTnirs)device).canmeasure())
{
double[] d = ((NIRSDAQ.Instrument.Devices.TechEn.BTnirs)device).Getdata();
for (int j = 0; j < d.Length; j++)
{
data.data[j].Add(d[j]);
}
double time = data.time.Count / fs + dt;
if (_info.numAux > 0)
{
if (((NIRSDAQ.Instrument.Devices.TechEn.BTnirs)device).canmeasureaux())
{
double[] aux = ((NIRSDAQ.Instrument.Devices.TechEn.BTnirs)device).GetdataAux();
for (int j = 0; j < aux.Length; j++)
{
data.auxillaries[j].data.Add(aux[j]);
data.auxillaries[j].time.Add(time);
}
}
}
data.time.Add(time);
data.numsamples = data.time.Count;
}
}
break;
}
return(data);
}
