protected override void Import(SBMLModel model)
{
for (long i = 0; i < model.getNumParameters(); i++)
{
_paramList.Add(CreateParameter(model.getParameter(i)));
}
AddToProject();
}
public void DoImport(Model sbmlModel, IMoBiProject moBiProject, SBMLInformation sbmlInformation, ICommandCollector command)
{
_sbmlProject = moBiProject;
_sbmlInformation = sbmlInformation;
_command = command;
try
{
Import(sbmlModel);
}
finally
{
_sbmlProject = null;
_sbmlInformation = null;
_command = null;
}
}
/// <summary>
/// Creates a Parameter Start Values Building Block and adds it to the MoBi Project.
/// </summary>
protected internal void CreateParameterStartValuesBuildingBlock(Model model)
{
var parameterStartValuesCreator = IoC.Resolve <IParameterStartValuesCreator>();
var ss = GetMainSpatialStructure(model);
var mb = GetMainMoleculeBuildingBlock();
if (ss == null || mb == null)
{
return;
}
var psvBb = parameterStartValuesCreator.CreateFrom(GetMainSpatialStructure(model), GetMainMoleculeBuildingBlock())
.WithId(SBMLConstants.SBML_PARAMETERSTARTVALUES_BB)
.WithName(SBMLConstants.SBML_PARAMETERSTARTVALUES_BB);
_command.AddCommand(new AddBuildingBlockCommand <IParameterStartValuesBuildingBlock>(psvBb).Run(_context));
}
/// <summary>
/// Creates a Rule and an Initial Assignment Importer to import SBML Rules and Initital Assignments.
/// </summary>
protected override void Import(Model model)
{
CreateParameterStartValuesBuildingBlock(model);
_initialAssignmentImporter.DoImport(model, _sbmlProject, _sbmlInformation, _command);
_ruleImporter.DoImport(model, _sbmlProject, _sbmlInformation, _command);
}
/// <summary>
/// Gets the MoBi Spatial Structure generated for the SBML Import.
/// </summary>
public IMoBiSpatialStructure GetMainSpatialStructure(Model model)
{
return(_sbmlProject.SpatialStructureCollection.FindByName(SBMLConstants.SBML_MODEL + model.getName()));
}
protected abstract void Import(Model model);