public parameters(uint version, string instrument_name, instrument_type instrument_type, string experiment_name, string chemistry) : this(c_csharp_runPINVOKE.new_parameters__SWIG_6(version, instrument_name, (int)instrument_type, experiment_name, chemistry), true)
{
if (c_csharp_runPINVOKE.SWIGPendingException.Pending)
{
throw c_csharp_runPINVOKE.SWIGPendingException.Retrieve();
}
}
public parameters(uint version, string instrument_name, instrument_type instrument_type, string experiment_name, string chemistry, uint control_lane, rfid_metadata flowcell_rfid) : this(c_csharp_runPINVOKE.new_parameters__SWIG_4(version, instrument_name, (int)instrument_type, experiment_name, chemistry, control_lane, rfid_metadata.getCPtr(flowcell_rfid)), true)
{
if (c_csharp_runPINVOKE.SWIGPendingException.Pending)
{
throw c_csharp_runPINVOKE.SWIGPendingException.Retrieve();
}
}
public static void list_summary_metrics_to_load(uchar_vector valid_to_load, instrument_type instrument)
{
c_csharp_run_metricsPINVOKE.list_summary_metrics_to_load__SWIG_1(uchar_vector.getCPtr(valid_to_load), (int)instrument);
if (c_csharp_run_metricsPINVOKE.SWIGPendingException.Pending)
{
throw c_csharp_run_metricsPINVOKE.SWIGPendingException.Retrieve();
}
}
public static void list_summary_metric_groups(metric_group_vector groups, instrument_type instrument)
{
c_csharp_run_metricsPINVOKE.list_summary_metric_groups__SWIG_1(metric_group_vector.getCPtr(groups), (int)instrument);
if (c_csharp_run_metricsPINVOKE.SWIGPendingException.Pending)
{
throw c_csharp_run_metricsPINVOKE.SWIGPendingException.Retrieve();
}
}
public static instrument_type parse_instrument_type(string name)
{
instrument_type ret = (instrument_type)c_csharp_runPINVOKE.parse_instrument_type(name);
if (c_csharp_runPINVOKE.SWIGPendingException.Pending)
{
throw c_csharp_runPINVOKE.SWIGPendingException.Retrieve();
}
return(ret);
}
protected override void SetUp()
{
string xml_file = "<?xml version=\"1.0\"?>\n" +
"<RunParameters xmlns:xsd=\"http://www.w3.org/2001/XMLSchema\" xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\">\n" +
" <EnableCloud>false</EnableCloud>\n" +
" <Barcode>000000000-A12V4</Barcode>\n" +
" <CopyManifests>true</CopyManifests>\n" +
" <FlowcellRFIDTag>\n" +
" <SerialNumber>000000000-A12V4</SerialNumber>\n" +
" <PartNumber>15028382</PartNumber>\n" +
" <ExpirationDate>2012-10-09T00:00:00</ExpirationDate>\n" +
" </FlowcellRFIDTag>\n" +
" <PR2BottleRFIDTag>\n" +
" <SerialNumber>MS2106444-00PR2</SerialNumber>\n" +
" <PartNumber>15023445</PartNumber>\n" +
" <ExpirationDate>2013-06-18T00:00:00</ExpirationDate>\n" +
" </PR2BottleRFIDTag>\n" +
" <ReagentKitRFIDTag>\n" +
" <ExpirationDate>0001-01-01T00:00:00</ExpirationDate>\n" +
" </ReagentKitRFIDTag>\n" +
" <Resumable>true</Resumable>\n" +
" <ManifestFiles />\n" +
" <AfterRunWashMethod>Post-Run Wash</AfterRunWashMethod>\n" +
" <Setup>\n" +
" <SupportMultipleSurfacesInUI>false</SupportMultipleSurfacesInUI>\n" +
" <ApplicationVersion>90.0.1.44</ApplicationVersion>\n" +
" <NumTilesPerSwath>14</NumTilesPerSwath>\n" +
" <NumSwaths>1</NumSwaths>\n" +
" <NumLanes>1</NumLanes>\n" +
" <Read1>0</Read1>\n" +
" <Index1Read>0</Index1Read>\n" +
" <Index2Read>0</Index2Read>\n" +
" <Read2>0</Read2>\n" +
" <ApplicationName>MiSeq Control Software</ApplicationName>\n" +
" </Setup>\n" +
" <RunID>120705_M00903_0009_A000000000-A12V4</RunID>\n" +
" <ScannerID>M00903</ScannerID>\n" +
" <RunNumber>8</RunNumber>\n" +
" <FPGAVersion>9.5.10</FPGAVersion>\n" +
" <CPLD>Not Specified</CPLD>\n" +
" <CameraModel>Not Specified</CameraModel>\n" +
" <CameraDriverVersion>Not Specified</CameraDriverVersion>\n" +
" <CameraFirmwareVersion>Not Specified</CameraFirmwareVersion>\n" +
" <MCSVersion>90.0.1.44</MCSVersion>\n" +
" <RTAVersion>1.16.18</RTAVersion>\n" +
" <PR2BottleBarcode>MS2106444-00PR2</PR2BottleBarcode>\n" +
" <ReagentKitPartNumberEntered />\n" +
" <ReagentKitVersion>Version2</ReagentKitVersion>\n" +
" <ReagentKitBarcode>AA1234567-12345</ReagentKitBarcode>\n" +
" <PreviousPR2BottleBarcode />\n" +
" <PreviousReagentKitBarcode />\n" +
" <ExperimentName />\n" +
" <Chemistry>Default</Chemistry>\n" +
" <Username>XXXXX</Username>\n" +
" <SelectedTiles>\n" +
" <int>0</int>\n" +
" </SelectedTiles>\n" +
" <Workflow>\n" +
" <Analysis>Metagenomics</Analysis>\n" +
" </Workflow>\n" +
" <EnableAnalysis>false</EnableAnalysis>\n" +
" <Reads>\n" +
" <RunInfoRead Number=\"1\" NumCycles=\"251\" IsIndexedRead=\"N\" />\n" +
" <RunInfoRead Number=\"2\" NumCycles=\"12\" IsIndexedRead=\"Y\" />\n" +
" <RunInfoRead Number=\"3\" NumCycles=\"251\" IsIndexedRead=\"N\" />\n" +
" </Reads>\n" +
" <TempFolder>D:\\Illumina\\MiSeqTemp\\120705_M00903_0009_A000000000-A12V4</TempFolder>\n" +
" <AnalysisFolder>D:\\Illumina\\MiSeqAnalysis\\120705_M00903_0009_A000000000-A12V4</AnalysisFolder>\n" +
" <RunStartDate>120705</RunStartDate>\n" +
" <MostRecentWashType>PostRun</MostRecentWashType>\n" +
" <RecipeFolder>D:\\Illumina\\MiSeq Control Software\\CustomRecipe</RecipeFolder>\n" +
" <ILMNOnlyRecipeFolder>C:\\Illumina\\MiSeq Control Software\\Recipe</ILMNOnlyRecipeFolder>\n" +
" <SampleSheetName>SampleSheet_Miseq</SampleSheetName>\n" +
" <SampleSheetFolder>C:\\Illumina\\MiSeq Control Software\\SampleSheets</SampleSheetFolder>\n" +
" <ManifestFolder>D:\\Illumina\\MiSeq Control Software\\Manifests</ManifestFolder>\n" +
" <OutputFolder>Z:\\120705_M00903_0009_A000000000-A12V4</OutputFolder>\n" +
" <FlowcellName>A</FlowcellName>\n" +
" <FocusMethod>AutoFocus</FocusMethod>\n" +
" <SurfaceToScan>Both</SurfaceToScan>\n" +
" <SaveFocusImages>true</SaveFocusImages>\n" +
" <SaveScanImages>true</SaveScanImages>\n" +
" <CloudUsername />\n" +
" <CloudRunId>398407</CloudRunId>\n" +
" <SendInstrumentHealthToILMN>true</SendInstrumentHealthToILMN>\n" +
" <AmpliconWorkflowType />\n" +
"</RunParameters>";
uint Version = 0;
instrument_type ApplicationName_and_SupportMultipleSurfacesInUI = instrument_type.MiSeq;
expected_param = new parameters(Version,
ApplicationName_and_SupportMultipleSurfacesInUI);
actual_param.parse(xml_file);
}
public static void populate_legacy_q_score_bins(q_score_bin_vector q_score_bins, instrument_type instrument, uint count)
{
c_csharp_run_metricsPINVOKE.populate_legacy_q_score_bins__SWIG_0(q_score_bin_vector.getCPtr(q_score_bins), (int)instrument, count);
if (c_csharp_run_metricsPINVOKE.SWIGPendingException.Pending)
{
throw c_csharp_run_metricsPINVOKE.SWIGPendingException.Retrieve();
}
}
public static void list_metrics_to_load(string metric_name, uchar_vector valid_to_load, instrument_type instrument, bool is_iuo)
{
c_csharp_run_metricsPINVOKE.list_metrics_to_load__SWIG_4(metric_name, uchar_vector.getCPtr(valid_to_load), (int)instrument, is_iuo);
if (c_csharp_run_metricsPINVOKE.SWIGPendingException.Pending)
{
throw c_csharp_run_metricsPINVOKE.SWIGPendingException.Retrieve();
}
}
public static void create_q_metrics_by_lane(base_q_metrics metric_set, base_q_by_lane_metrics bylane, instrument_type instrument)
{
c_csharp_run_metricsPINVOKE.create_q_metrics_by_lane(base_q_metrics.getCPtr(metric_set), base_q_by_lane_metrics.getCPtr(bylane), (int)instrument);
if (c_csharp_run_metricsPINVOKE.SWIGPendingException.Pending)
{
throw c_csharp_run_metricsPINVOKE.SWIGPendingException.Retrieve();
}
}
public static void populate_legacy_q_score_bins(base_q_by_lane_metrics q_metric_set, q_score_bin_vector q_score_bins, instrument_type instrument)
{
c_csharp_run_metricsPINVOKE.populate_legacy_q_score_bins__SWIG_2(base_q_by_lane_metrics.getCPtr(q_metric_set), q_score_bin_vector.getCPtr(q_score_bins), (int)instrument);
if (c_csharp_run_metricsPINVOKE.SWIGPendingException.Pending)
{
throw c_csharp_run_metricsPINVOKE.SWIGPendingException.Retrieve();
}
}
public void legacy_channel_update(instrument_type type)
{
c_csharp_run_metricsPINVOKE.run_metrics_legacy_channel_update(swigCPtr, (int)type);
}
public static string to_string(instrument_type value)
{
string ret = c_csharp_runPINVOKE.to_string__SWIG_6((int)value);
return(ret);
}
public instrument_type instrument_type()
{
instrument_type ret = (instrument_type)c_csharp_runPINVOKE.parameters_instrument_type(swigCPtr);
return(ret);
}
