private static void RegisterMasicEvents(clsMASIC sourceClass)
{
RegisterEvents(sourceClass);
sourceClass.ProgressUpdate += ProgressUpdateHandler;
sourceClass.ProgressResetKeypressAbort += ProgressResetKeypressAbortHandler;
sourceClass.ProgressSubtaskChanged += ProgressSubtaskChangedHandler;
}
public void Setup()
{
mMasic = new clsMASIC();
mMASICPeakFinder = new MASICPeakFinder.clsMASICPeakFinder();
}
public static int Main()
{
var commandLineParser = new clsParseCommandLine();
mInputFilePath = string.Empty;
mOutputDirectoryPath = string.Empty;
mParameterFilePath = string.Empty;
mRecurseDirectories = false;
mMaxLevelsToRecurse = 0;
mQuietMode = false;
mLogMessagesToFile = false;
mLogFilePath = string.Empty;
mLastSubtaskProgressTime = DateTime.UtcNow;
try
{
var proceed = false;
if (commandLineParser.ParseCommandLine())
{
if (SetOptionsUsingCommandLineParameters(commandLineParser))
{
proceed = true;
}
}
if (commandLineParser.ParameterCount + commandLineParser.NonSwitchParameterCount == 0 && !commandLineParser.NeedToShowHelp)
{
#if GUI
ShowGUI();
#else
ShowProgramHelp();
#endif
return(0);
}
if (!proceed || commandLineParser.NeedToShowHelp || mInputFilePath.Length == 0)
{
ShowProgramHelp();
return(-1);
}
mMASIC = new clsMASIC();
RegisterMasicEvents(mMASIC);
mMASIC.Options.DatasetLookupFilePath = mDatasetLookupFilePath;
mMASIC.Options.SICOptions.DatasetID = mDatasetID;
if (!string.IsNullOrEmpty(mMASICStatusFilename))
{
mMASIC.Options.MASICStatusFilename = mMASICStatusFilename;
}
mMASIC.LogMessagesToFile = mLogMessagesToFile;
mMASIC.LogFilePath = mLogFilePath;
mMASIC.LogDirectoryPath = mLogDirectoryPath;
if (!mQuietMode)
{
#if GUI
mProgressForm = new frmProgress();
mProgressForm.InitializeProgressForm("Parsing " + Path.GetFileName(mInputFilePath), 0, 100, false, true);
mProgressForm.InitializeSubtask(string.Empty, 0, 100, false);
mProgressForm.ResetKeyPressAbortProcess();
mProgressForm.Show();
Application.DoEvents();
#else
Console.WriteLine("Parsing " + Path.GetFileName(mInputFilePath));
#endif
}
int returnCode;
if (mRecurseDirectories)
{
if (mMASIC.ProcessFilesAndRecurseDirectories(mInputFilePath, mOutputDirectoryPath,
mOutputDirectoryAlternatePath, mRecreateDirectoryHierarchyInAlternatePath,
mParameterFilePath, mMaxLevelsToRecurse))
{
returnCode = 0;
}
else
{
returnCode = (int)mMASIC.ErrorCode;
}
}
else if (mMASIC.ProcessFilesWildcard(mInputFilePath, mOutputDirectoryPath, mParameterFilePath))
{
returnCode = 0;
}
else
{
returnCode = (int)mMASIC.ErrorCode;
if (returnCode != 0)
{
Console.WriteLine("Error while processing: " + mMASIC.GetErrorMessage());
}
}
if (returnCode != 0)
{
ProgRunner.SleepMilliseconds(1500);
}
return(returnCode);
}
catch (Exception ex)
{
ShowErrorMessage("Error occurred in Program->Main: " + Environment.NewLine + ex.Message);
ProgRunner.SleepMilliseconds(1500);
return(-1);
}
#if GUI
finally
{
if (mProgressForm != null)
{
mProgressForm.HideForm();
mProgressForm = null;
}
}
#endif
}
