static int Main(string[] args)
{
int ret;
if((ret = Helper.CheckArguments(args)) != 0) return ret;
base_tile_metrics tile_metric_set = new base_tile_metrics ();
if ((ret = Helper.ReadInterop (args [0], tile_metric_set)) != 0)
return ret;
Dictionary<uint, TileSummary> lane_summary_map = new Dictionary<uint, TileSummary>();
foreach(var metric in tile_metric_set.metrics())
{
if (!lane_summary_map.ContainsKey (metric.lane ()))
lane_summary_map.Add (metric.lane (), new TileSummary ());
lane_summary_map[metric.lane()].cluster_count += metric.clusterCount();
lane_summary_map[metric.lane()].cluster_count_pf += metric.clusterCountPf();
lane_summary_map[metric.lane()].tile_count += 1;
}
foreach (KeyValuePair<uint, TileSummary> pair in lane_summary_map)
{
Console.WriteLine("Lane: {0}", pair.Key);
Console.WriteLine("Tiles: {0}", pair.Value.tile_count);
Console.WriteLine("Cluster PF (%): {0}", pair.Value.cluster_count_pf / pair.Value.cluster_count * 100);
}
return 0;
}
static int Main(string[] args)
{
if (args.Length != 1)
{
if (args.Length < 1)
Console.WriteLine ("No run folder");
else
Console.WriteLine ("Too many arguments");
return 1;
}
base_tile_metrics tile_metric_set = new base_tile_metrics ();
try
{
c_csharp_comm.read_interop (args [0], tile_metric_set);
}
catch(incomplete_file_exception){}
catch(file_not_found_exception ex)
{
Console.WriteLine("File not found: "+args [0]);
Console.WriteLine (ex);
return 1;
}
catch(bad_format_exception ex)
{
Console.WriteLine (ex);
return 1;
}
Console.Write ("Tile metric set contains {0} metrics", tile_metric_set.size());
return 0;
}
public static void summarize_index_metrics(base_index_metrics index_metrics, base_tile_metrics tile_metrics, uint lane_count, index_flowcell_summary summary)
{
c_csharp_summaryPINVOKE.summarize_index_metrics__SWIG_1(base_index_metrics.getCPtr(index_metrics), base_tile_metrics.getCPtr(tile_metrics), lane_count, index_flowcell_summary.getCPtr(summary));
if (c_csharp_summaryPINVOKE.SWIGPendingException.Pending)
{
throw c_csharp_summaryPINVOKE.SWIGPendingException.Retrieve();
}
}
public void set_tile_metric_set(base_tile_metrics metrics)
{
c_csharp_run_metricsPINVOKE.run_metrics_set_tile_metric_set(swigCPtr, base_tile_metrics.getCPtr(metrics));
if (c_csharp_run_metricsPINVOKE.SWIGPendingException.Pending)
{
throw c_csharp_run_metricsPINVOKE.SWIGPendingException.Retrieve();
}
}
public void TestTileMetricsIndexOutOfBoundsException()
{
base_tile_metrics summary = new base_tile_metrics();
try{
System.Console.WriteLine(summary.at(0u));
Assert.Fail("No exception thrown!");
}catch (Illumina.InterOp.Metrics.index_out_of_bounds_exception) {}
}
protected void SetUp()
{
read_metric_vector read1 = new read_metric_vector();
read1.Add(new read_metric(1, 2.61630869f, 0.0797112584f, 0.119908921f));
expected_metrics.Add(new tile_metric(7, 1114, 2355119.25f, 1158081.50f, 6470949, 3181956, read1));
read_metric_vector read2 = new read_metric_vector();
read2.Add(new read_metric(1, 2.62243795f, 0.129267812f, 0.135128692f));
expected_metrics.Add(new tile_metric(7, 1214, 2355119.25f, 1174757.75f, 6470949, 3227776, read2));
read_metric_vector read3 = new read_metric_vector();
read3.Add(new read_metric(1, 2.490309f, 0.11908555f, 0.092706576f));
expected_metrics.Add(new tile_metric(7, 2114, 2355119.25f, 1211592.38f, 6470949, 3328983, read3));
int[] tmp = new int[] { 2, 10
, 7, 0, 90, 4, 100, 0, -67, -66, 15, 74
, 7, 0, 90, 4, 102, 0, 74, 122, -59, 74
, 7, 0, 90, 4, 101, 0, 12, 94, -115, 73
, 7, 0, 90, 4, 103, 0, 16, 54, 66, 74
, 7, 0, 90, 4, -56, 0, 82, -11, 80, 58
, 7, 0, 90, 4, -55, 0, -62, 42, -99, 58
, 7, 0, 90, 4, 44, 1, -102, 113, 39, 64
, 7, 0, -66, 4, 100, 0, -67, -66, 15, 74
, 7, 0, -66, 4, 102, 0, 74, 122, -59, 74
, 7, 0, -66, 4, 101, 0, 46, 103, -113, 73
, 7, 0, -66, 4, 103, 0, 0, 2, 69, 74
, 7, 0, -66, 4, -56, 0, 21, 111, -87, 58
, 7, 0, -66, 4, -55, 0, -86, 29, -79, 58
, 7, 0, -66, 4, 44, 1, 6, -42, 39, 64
, 7, 0, 66, 8, 100, 0, -67, -66, 15, 74
, 7, 0, 66, 8, 102, 0, 74, 122, -59, 74
, 7, 0, 66, 8, 101, 0, 67, -26, -109, 73
, 7, 0, 66, 8, 103, 0, 92, 47, 75, 74
, 7, 0, 66, 8, -56, 0, 123, 22, -100, 58
, 7, 0, 66, 8, -55, 0, 85, 6, 115, 58
, 7, 0, 66, 8, 44, 1, 57, 97, 31, 64 };
expected_binary_data = new byte[tmp.Length];
for (int i = 0; i < expected_binary_data.Length; i++)
{
expected_binary_data[i] = (byte)tmp[i];
}
expected_metric_set = new base_tile_metrics(expected_metrics, Version, new base_metric_header());
c_csharp_comm.read_interop_from_buffer(expected_binary_data, (uint)expected_binary_data.Length, actual_metric_set);
}
protected void SetUp()
{
read_metric_vector read1 = new read_metric_vector();
read1.Add(new read_metric(1, 2.61630869f, 0.0797112584f, 0.119908921f));
expected_metrics.Add(new tile_metric(7, 1114, 2355119.25f,1158081.50f,6470949,3181956, read1));
read_metric_vector read2 = new read_metric_vector();
read2.Add(new read_metric(1, 2.62243795f, 0.129267812f, 0.135128692f));
expected_metrics.Add(new tile_metric(7, 1214, 2355119.25f,1174757.75f,6470949,3227776, read2));
read_metric_vector read3 = new read_metric_vector();
read3.Add(new read_metric(1, 2.490309f, 0.11908555f, 0.092706576f));
expected_metrics.Add(new tile_metric(7, 2114, 2355119.25f,1211592.38f,6470949,3328983, read3));
int[] tmp = new int[]{2,10
,7,0,90,4,100,0,-67,-66,15,74
,7,0,90,4,102,0,74,122,-59,74
,7,0,90,4,101,0,12,94,-115,73
,7,0,90,4,103,0,16,54,66,74
,7,0,90,4,-56,0,82,-11,80,58
,7,0,90,4,-55,0,-62,42,-99,58
,7,0,90,4,44,1,-102,113,39,64
,7,0,-66,4,100,0,-67,-66,15,74
,7,0,-66,4,102,0,74,122,-59,74
,7,0,-66,4,101,0,46,103,-113,73
,7,0,-66,4,103,0,0,2,69,74
,7,0,-66,4,-56,0,21,111,-87,58
,7,0,-66,4,-55,0,-86,29,-79,58
,7,0,-66,4,44,1,6,-42,39,64
,7,0,66,8,100,0,-67,-66,15,74
,7,0,66,8,102,0,74,122,-59,74
,7,0,66,8,101,0,67,-26,-109,73
,7,0,66,8,103,0,92,47,75,74
,7,0,66,8,-56,0,123,22,-100,58
,7,0,66,8,-55,0,85,6,115,58
,7,0,66,8,44,1,57,97,31,64
};
expected_binary_data = new byte[tmp.Length];
for(int i=0;i<expected_binary_data.Length;i++) expected_binary_data[i] = (byte)tmp[i];
expected_metric_set = new base_tile_metrics(expected_metrics, Version, new base_metric_header());
c_csharp_comm.read_interop_from_buffer(expected_binary_data, (uint)expected_binary_data.Length, actual_metric_set);
actual_metrics = actual_metric_set.metrics();
}
public static int ReadInterop(string filename, base_tile_metrics tile_metric_set)
{
try
{
c_csharp_comm.read_interop(filename, tile_metric_set);
}
catch (incomplete_file_exception) {}
catch (file_not_found_exception ex)
{
Console.WriteLine("File not found: " + filename);
Console.WriteLine(ex);
return(1);
}
catch (bad_format_exception ex)
{
Console.WriteLine(ex);
return(1);
}
return(0);
}
public static int ReadInterop(string filename, base_tile_metrics tile_metric_set)
{
try
{
c_csharp_comm.read_interop (filename, tile_metric_set);
}
catch(incomplete_file_exception){}
catch(file_not_found_exception ex)
{
Console.WriteLine("File not found: "+filename);
Console.WriteLine (ex);
return 1;
}
catch(bad_format_exception ex)
{
Console.WriteLine (ex);
return 1;
}
return 0;
}
static int Main(string[] args)
{
if (args.Length != 1)
{
if (args.Length < 1)
{
Console.WriteLine("No run folder");
}
else
{
Console.WriteLine("Too many arguments");
}
return(1);
}
base_tile_metrics tile_metric_set = new base_tile_metrics();
try
{
c_csharp_comm.read_interop(args [0], tile_metric_set);
}
catch (incomplete_file_exception) {}
catch (file_not_found_exception ex)
{
Console.WriteLine("File not found: " + args [0]);
Console.WriteLine(ex);
return(1);
}
catch (bad_format_exception ex)
{
Console.WriteLine(ex);
return(1);
}
Console.Write("Tile metric set contains {0} metrics", tile_metric_set.size());
return(0);
}
static int Main(string[] args)
{
int ret;
if ((ret = Helper.CheckArguments(args)) != 0)
{
return(ret);
}
base_tile_metrics tile_metric_set = new base_tile_metrics();
if ((ret = Helper.ReadInterop(args [0], tile_metric_set)) != 0)
{
return(ret);
}
Dictionary <uint, TileSummary> lane_summary_map = new Dictionary <uint, TileSummary>();
foreach (var metric in tile_metric_set.metrics())
{
if (!lane_summary_map.ContainsKey(metric.lane()))
{
lane_summary_map.Add(metric.lane(), new TileSummary());
}
lane_summary_map[metric.lane()].cluster_count += metric.clusterCount();
lane_summary_map[metric.lane()].cluster_count_pf += metric.clusterCountPf();
lane_summary_map[metric.lane()].tile_count += 1;
}
foreach (KeyValuePair <uint, TileSummary> pair in lane_summary_map)
{
Console.WriteLine("Lane: {0}", pair.Key);
Console.WriteLine("Tiles: {0}", pair.Value.tile_count);
Console.WriteLine("Cluster PF (%): {0}", pair.Value.cluster_count_pf / pair.Value.cluster_count * 100);
}
return(0);
}
public void TestTileMetricsIndexOutOfBoundsException()
{
base_tile_metrics summary = new base_tile_metrics();
System.Console.WriteLine(summary.at(0u));
}
public base_tile_metrics tile_metric_set()
{
base_tile_metrics ret = new base_tile_metrics(c_csharp_run_metricsPINVOKE.run_metrics_tile_metric_set(swigCPtr), false);
return(ret);
}