public AimGraphic(IGraphic graphic, aim_dotnet.ImageAnnotation imageAnnotation, int shapeIdentifier)
: base(graphic)
{
_imageAnnotation = imageAnnotation;
_shapeIdentifier = shapeIdentifier;
_graphic = graphic;
}
public AimGraphic(IGraphic graphic, aim_dotnet.ImageAnnotation imageAnnotation, int shapeIdentifier)
: base(graphic)
{
_imageAnnotation = imageAnnotation;
_shapeIdentifier = shapeIdentifier;
_graphic = graphic;
}
private static string GetImageAnnotationHtml(aim_dotnet.ImageAnnotation imageAnnotation)
{
var sb = new StringBuilder();
var htmlFormatter = new AimHtmlFormatter();
var ctrlColor = Color.FromKnownColor(KnownColor.Control);
sb.Append(HtmlDocHeader);
sb.AppendFormat("<body style=\"background-color: #{0}{1}{2};\" onload=\"setupPaths(['{3}', '{4}'])\">",
ctrlColor.R.ToString("X2"), ctrlColor.G.ToString("X2"), ctrlColor.B.ToString("X2"),
MinusImagePathName, PlusImagePathName);
sb.Append("<div id=\"main_content\">");
sb.Append(htmlFormatter.GetAnatomicEntitiesHtml(imageAnnotation.AnatomyEntityCollection));
sb.Append(htmlFormatter.GetImagingObservationHtml(imageAnnotation.ImagingObservationCollection));
sb.Append("</div>");
sb.Append("</body>");
sb.Append("</html>");
return(sb.ToString());
}
private aim_dotnet.ImageStudy AimStudyFromAnnotation(aim_dotnet.Annotation annotation)
{
aim_dotnet.ImageAnnotation imageAnnotation = annotation as aim_dotnet.ImageAnnotation;
if (imageAnnotation == null || imageAnnotation.ImageReferenceCollection.Count == 0)
{
return(null);
}
aim_dotnet.DICOMImageReference dicomImageReference = imageAnnotation.ImageReferenceCollection[0] as aim_dotnet.DICOMImageReference;
if (dicomImageReference == null)
{
return(null);
}
if (dicomImageReference.Study == null || dicomImageReference.Study.Series == null ||
dicomImageReference.Study.Series.ImageCollection == null || dicomImageReference.Study.Series.ImageCollection.Count == 0)
{
return(null);
}
return(dicomImageReference.Study);
}
private static aim_dotnet.ImageAnnotation CreateImageAnnotation(IImageSopProvider imageSop, AimAnnotationCreationContext creationContext)
{
// Create Basic Image Annotation
Platform.CheckTrue(creationContext.SelectedAnnotationKind == aim_dotnet.AnnotationKind.AK_ImageAnnotation, "ImageAnnotationKind");
Platform.CheckForEmptyString(creationContext.AnnotationName, "AnnotationName");
var imgAnnotation = new aim_dotnet.ImageAnnotation();
imgAnnotation.CodeValue = creationContext.AnnotationTypeCode.CodeValue;
imgAnnotation.CodeMeaning = creationContext.AnnotationTypeCode.CodeMeaning;
imgAnnotation.CodingSchemeDesignator = creationContext.AnnotationTypeCode.CodingSchemeDesignator;
imgAnnotation.CodingSchemeVersion = creationContext.AnnotationTypeCode.CodingSchemeVersion;
imgAnnotation.UniqueIdentifier = DicomUid.GenerateUid().UID;
imgAnnotation.Name = creationContext.AnnotationName;
imgAnnotation.DateTime = DateTime.Now;
imgAnnotation.Patient = CreatePatient(imageSop);
imgAnnotation.Equipment = CreateEquipment();
if (creationContext.AnnotationUser != null)
imgAnnotation.User = new aim_dotnet.User(creationContext.AnnotationUser);
if (!string.IsNullOrEmpty(creationContext.AnnotationComment))
imgAnnotation.Comment = creationContext.AnnotationComment;
if (creationContext.SelectedAnatomicEntities != null)
imgAnnotation.AnatomyEntityCollection = new List<aim_dotnet.AnatomicEntity>(creationContext.SelectedAnatomicEntities);
if (creationContext.SelectedImagingObservations != null)
imgAnnotation.ImagingObservationCollection = new List<aim_dotnet.ImagingObservation>(creationContext.SelectedImagingObservations);
if (creationContext.SelectedInferences != null)
imgAnnotation.InferenceCollection = new List<aim_dotnet.Inference>(creationContext.SelectedInferences);
return imgAnnotation;
}
public override void Execute()
{
List <AIMSearchResult> results = new List <AIMSearchResult>();
List <aim_dotnet.Annotation> annotations = null;
try
{
if (_aimQueryParameters.AnnotationType == AnnotationType.ImageAnnotation)
{
AIMTCGAImageAnnotation aimService = new AIMTCGAImageAnnotation();
annotations = aimService.getImageAnnotationInfoList(_aimQueryParameters);
}
else if (_aimQueryParameters.AnnotationType == AnnotationType.AnnotationOfAnnotation)
{
AIMTCGAAnnotationOfAnnotation aimService = new AIMTCGAAnnotationOfAnnotation();
annotations = aimService.getAnnotationOfAnnotationInfoList(_aimQueryParameters);
}
}
catch (GridServicerException ex)
{
SetError(string.Format("{0}. Contact your system administrator", ex.Message));
}
if (annotations != null)
{
foreach (aim_dotnet.Annotation annotation in annotations)
{
AIMSearchResult result = new AIMSearchResult();
result.RetrievedAnnotation = annotation;
if (annotation.AnatomyEntityCollection != null)
{
foreach (aim_dotnet.AnatomicEntity anatomicEntity in annotation.AnatomyEntityCollection)
{
AnatomicEntity ae = new AnatomicEntity();
ae.CodeValue = anatomicEntity.CodeValue;
ae.CodeMeaning = anatomicEntity.CodeMeaning;
ae.CodingSchemeDesignator = anatomicEntity.CodingSchemeDesignator;
result.AnatomicEntities.Add(ae);
if (anatomicEntity.AnatomicEntityCharacteristicCollection != null)
{
foreach (aim_dotnet.AnatomicEntityCharacteristic characteristic in anatomicEntity.AnatomicEntityCharacteristicCollection)
{
AnatomicEntityCharacteristic aec = new AnatomicEntityCharacteristic();
aec.CodeValue = characteristic.CodeValue;
aec.CodeMeaning = characteristic.CodeMeaning;
aec.CodingSchemeDesignator = characteristic.CodingSchemeDesignator;
result.AnatomicEntityCharacteristics.Add(aec);
}
}
}
}
if (annotation.ImagingObservationCollection != null)
{
foreach (aim_dotnet.ImagingObservation imagingObservation in annotation.ImagingObservationCollection)
{
ImagingObservation io = new ImagingObservation();
io.CodeValue = imagingObservation.CodeValue;
io.CodeMeaning = imagingObservation.CodeMeaning;
io.CodingSchemeDesignator = imagingObservation.CodingSchemeDesignator;
result.ImagingObservations.Add(io);
if (imagingObservation.ImagingObservationCharacteristicCollection != null)
{
foreach (aim_dotnet.ImagingObservationCharacteristic characteristic in imagingObservation.ImagingObservationCharacteristicCollection)
{
ImagingObservationCharacteristic ioc = new ImagingObservationCharacteristic();
ioc.CodeValue = characteristic.CodeValue;
ioc.CodeMeaning = characteristic.CodeMeaning;
ioc.CodingSchemeDesignator = characteristic.CodingSchemeDesignator;
ioc.Comment = characteristic.Comment;
result.ImagingObservationCharacteristics.Add(ioc);
}
}
}
}
if (annotation.User != null)
{
User user = new User();
user.Name = annotation.User.Name;
user.LoginName = annotation.User.LoginName;
user.RoleInTrial = annotation.User.RoleInTrial;
user.NumberWithinRoleInClinicalTrial = annotation.User.NumberWithinRoleOfClinicalTrial;
result.User = user;
}
if (annotation is aim_dotnet.ImageAnnotation)
{
aim_dotnet.ImageAnnotation imageAnnotation = (aim_dotnet.ImageAnnotation)annotation;
// Study Instance UID
if (imageAnnotation.ImageReferenceCollection != null && imageAnnotation.ImageReferenceCollection.Count > 0)
{
aim_dotnet.DICOMImageReference dicomImageReference =
imageAnnotation.ImageReferenceCollection[0] as aim_dotnet.DICOMImageReference;
if (dicomImageReference != null)
{
result.Study.StudyInstanceUid = dicomImageReference.Study.InstanceUID;
}
}
if (imageAnnotation.Patient != null)
{
result.Patient.PatientId = imageAnnotation.Patient.Id.ToString();
result.Patient.PatientsName = imageAnnotation.Patient.Name;
result.Patient.PatientsSex = imageAnnotation.Patient.Sex;
result.Patient.PatientBirthDate = imageAnnotation.Patient.BirthDate;
}
foreach (aim_dotnet.ImageReference imageReference in imageAnnotation.ImageReferenceCollection)
{
if (imageReference is aim_dotnet.DICOMImageReference)
{
aim_dotnet.DICOMImageReference dicomImageReference = (aim_dotnet.DICOMImageReference)imageReference;
result.Series.SeriesInstanceUid = ((dicomImageReference.Study ?? new aim_dotnet.ImageStudy()).Series ?? new aim_dotnet.ImageSeries()).InstanceUID;
}
}
}
results.Add(result);
}
}
AddResultsToTable(results);
OnCommandExecuted();
}
