public ZedGraphO18Experimental_ScanPPM(ZedGraphControl zgcGraph, Graphics g)
{
MasterPane myMaster = ZedGraphicExtension.InitMasterPanel(zgcGraph, g, 2, "Experimental Envelopes");
updates.Updates.Add(new ZedGraphO18ExperimentalScan(zgcGraph, myMaster.PaneList[0], ""));
updates.Updates.Add(new ZedGraphO18ExperimentalPPM(zgcGraph, myMaster.PaneList[1], ""));
}
private void lbPeptides_SelectedIndexChanged(object sender, EventArgs e)
{
if (lbPeptides.SelectedItem != null)
{
DigestPeptideInfo dpi = lbPeptides.SelectedItem as DigestPeptideInfo;
lbPrecursor.BeginUpdate();
try
{
lbPrecursor.Items.Clear();
List <SimplePeakChro> peaks = (List <SimplePeakChro>)dpi.Annotations[CHRO_KEY];
var validPeaks = (from p in peaks
where p.Peaks.Count > 0
select p).ToList();
try
{
if (validPeaks.Count == 0)
{
ZedGraphicExtension.InitMasterPanel(zgcScans, CreateGraphics(), 1, "Chromotograph");
zgcScans.MasterPane.PaneList[0].ClearData();
return;
}
var mainPane = ZedGraphicExtension.InitMasterPanel(zgcScans, CreateGraphics(), validPeaks.Count, "Chromotograph");
int index = 0;
foreach (var chro in peaks)
{
lbPrecursor.Items.Add(chro);
if (chro.Peaks.Count > 0)
{
var pplSample = new PointPairList();
foreach (ScanPeak p in chro.Peaks)
{
pplSample.Add(p.Scan, p.Intensity);
}
mainPane.PaneList[index].AddCurve(MyConvert.Format("{0:0.0000},{1}", chro.Mz, chro.Charge), pplSample, Color.Red, SymbolType.None);
//mainPane.PaneList[index].XAxis.Scale.Min = 0;
//mainPane.PaneList[index].XAxis.Scale.Max = chro.MaxRetentionTime;
index++;
}
}
}
finally
{
ZedGraphicExtension.UpdateGraph(zgcScans);
}
}
finally
{
lbPrecursor.EndUpdate();
}
lbIdentified.Items.Clear();
if (ir != null)
{
if (pepMap.ContainsKey(dpi.PeptideSeq))
{
lbIdentified.BeginUpdate();
try
{
var ids = pepMap[dpi.PeptideSeq];
foreach (var id in ids)
{
lbIdentified.Items.Add(MyConvert.Format("[{0}; {1}]", id.Query.FileScan.FirstScan, id.Charge));
}
}
finally
{
lbIdentified.EndUpdate();
}
}
}
}
}
private void lvPeptides_SelectedIndexChanged(object sender, EventArgs e)
{
if (lvPeptides.SelectedItems.Count > 0)
{
var spectrum = lvPeptides.SelectedItems[0].Tag as IIdentifiedSpectrum;
var file = ProteinChromatographProcessor.GetTargetFile(GetOriginFile(), rawFile.FullName, SpectrumToChro(spectrum));
var chro = new SimplePeakChroXmlFormat().ReadFromFile(file);
try
{
zgcScans.ClearData(false);
var mainPane = ZedGraphicExtension.InitMasterPanel(zgcScans, CreateGraphics(), 2, "Chromotograph");
if (chro.Peaks.Count > 0)
{
var pplSample = new PointPairList();
var pplppm = new PointPairList();
var bFirst = true;
foreach (ScanPeak p in chro.Peaks)
{
pplSample.Add(p.RetentionTime, p.Intensity);
pplppm.Add(p.RetentionTime, p.PPMDistance);
//if (p.Intensity > 0)
//{
// pplSample.Add(p.RetentionTime, p.Intensity);
// pplppm.Add(p.RetentionTime, p.PPMDistance);
//}
//else if (pplSample.Count > 0)
//{
// if (bFirst)
// {
// mainPane.PaneList[0].AddCurve(MyConvert.Format("{0:0.0000},{1}", chro.Mz, chro.Charge), pplSample, Color.Red, SymbolType.None);
// mainPane.PaneList[1].AddCurve(MyConvert.Format("{0:0.0000},{1}", chro.Mz, chro.Charge), pplppm, Color.Red, SymbolType.None);
// }
// else
// {
// mainPane.PaneList[0].AddCurve("a", pplSample, Color.Red, SymbolType.None);
// mainPane.PaneList[1].AddCurve("a", pplppm, Color.Red, SymbolType.None);
// }
// pplSample.Clear();
// pplppm.Clear();
// bFirst = false;
//}
}
if (pplSample.Count > 0)
{
if (bFirst)
{
mainPane.PaneList[0].AddCurve(MyConvert.Format("{0:0.0000},{1}", chro.Mz, chro.Charge), pplSample, Color.Red, SymbolType.None);
mainPane.PaneList[1].AddCurve(MyConvert.Format("{0:0.0000},{1}", chro.Mz, chro.Charge), pplppm, Color.Red, SymbolType.None);
}
else
{
mainPane.PaneList[0].AddCurve("a", pplSample, Color.Red, SymbolType.None);
mainPane.PaneList[1].AddCurve("a", pplppm, Color.Red, SymbolType.None);
}
}
}
}
finally
{
ZedGraphicExtension.UpdateGraph(zgcScans);
}
}
}