private void loadNetworkToolStripMenuItem_Click(object sender, EventArgs e)
{
string filename;
OpenFileDialog oDialog = new OpenFileDialog();
oDialog.AddExtension = true;
oDialog.DefaultExt = "xml";
oDialog.Title = "Load Seed Genome";
oDialog.RestoreDirectory = true;
// Show Open Dialog and Respond to OK
if (oDialog.ShowDialog() == DialogResult.OK)
{
filename = oDialog.FileName;
}
else
{
return;
}
NeatGenome.NeatGenome seedGenome = null;
try
{
XmlDocument doc = new XmlDocument();
doc.Load(filename);
seedGenome = XmlNeatGenomeReaderStatic.Read(doc);
}
catch (Exception ex)
{
MessageBox.Show("Problem loading genome. \n" + ex.Message);
return;
}
currentBest = GenomeDecoder.DecodeToFloatFastConcurrentNetwork(seedGenome, null);
}
public void calcFitness(string genomeFile, int type)
{
XmlDocument doc = new XmlDocument();
doc.Load(genomeFile);
NeatGenome genome = XmlNeatGenomeReaderStatic.Read(doc);
INetworkEvaluator eval;
if (type == 0)
{
eval = new CTRNNNetworkEvaluator(4, 12, 12);
}
else if (type == 1)
{
eval = new SUPGNetworkEvaluator(4, 12, 12);
}
else
{
doClune = true;
eval = new CluneNetworkEvaluator(20, 20, 20);
}
var tempNet = genome.Decode(null);
MessageBox.Show(eval.threadSafeEvaluateNetwork(tempNet)[0].ToString());
}
public FieldSubs3LQTable(RLClientBase client, int numTeammates, int myUnum)
: base(client, numTeammates, myUnum, false)
{
if (Program.LoadingGenome)
{
try
{
var doc = new XmlDocument();
doc.Load(Program.LoadedGenomePath);
NeatGenome readCPPN = XmlNeatGenomeReaderStatic.Read(doc);
var substrate = new MultiLayerSandwichSubstrate(Rows, Cols + 2, NeatExpParams.SubstrateLayers,
NeatExpParams.AddBiasToSubstrate, HyperNEATParameters.substrateActivationFunction);
SharpNeatLib.NeatGenome.NeatGenome tempGenome = substrate.GenerateGenome(readCPPN.Decode(HyperNEATParameters.substrateActivationFunction));
m_loadedNetwork = tempGenome.Decode(HyperNEATParameters.substrateActivationFunction);
m_loadingBehaviour = true;
}
catch (Exception ex)
{
Console.WriteLine(ex.ToString());
m_loadingBehaviour = false;
}
}
}
/// <summary>
/// Loads a genome from the specified XML file.
/// </summary>
public void loadGenome(String filename)
{
XmlDocument doc = new XmlDocument();
doc.Load(filename);
genome = XmlNeatGenomeReaderStatic.Read(doc);
bestGenomeSoFar = genome;
}
public void loadGenome(String filename)
{
XmlDocument doc = new XmlDocument();
doc.Load(filename);
genome = XmlNeatGenomeReaderStatic.Read(doc);
bestGenomeSoFar = genome;
genomeFilename = filename;
//TODO maybe include initialize();
}
public void loadSeed(string seedGenomeFile)
{
XmlDocument doc = new XmlDocument();
doc.Load(seedGenomeFile);
officialSeedGenome = XmlNeatGenomeReaderStatic.Read(doc);
//since idgen is still in control of genomeIDs, we have to increment it
//for now... soon win will be in charge. You'll see, things will be different.
idgen.mostRecentGenomeID(officialSeedGenome.GenomeId);
}
NeatGenome loadGenome(string genomeFileName)
{
//XmlDocument xDoc =
XmlDocument doc = new XmlDocument();
doc.Load(genomeFileName);
//this will read the neatgenome, then we can immediately enter these neurons into the database
return(XmlNeatGenomeReaderStatic.Read(doc));
}
private void adHocAnalysisToolStripMenuItem_Click(object sender, EventArgs e)
{
string filename;
StreamWriter sw;
NeatGenome.NeatGenome seedGenome = null;
Stats currentStats = new Stats();
for (FoodGatherParams.resolution = 8; FoodGatherParams.resolution <= 128; FoodGatherParams.resolution *= 2)
{
FoodGatherParams.fillFood();
FoodGatherParams.fillLookups();
sw = new StreamWriter("logfile" + FoodGatherParams.resolution.ToString() + ".txt");
for (int run = 1; run <= 20; run++)
{
for (int generation = 1; generation <= 500; generation++)
{
filename = "run" + run.ToString() + @"\genome_" + generation.ToString() + ".xml";
try
{
XmlDocument doc = new XmlDocument();
doc.Load("run" + run.ToString() + "\\genome_" + generation.ToString() + ".xml");
seedGenome = XmlNeatGenomeReaderStatic.Read(doc);
}
catch (Exception ex)
{
//MessageBox.Show(generation.ToString());
currentStats.generation = generation;
currentStats.run = run;
writeStats(sw, currentStats);
continue;
//do some output
}
currentStats = FoodGathererNetworkEvaluator.postHocAnalyzer(seedGenome);
currentStats.CPPNconnections = seedGenome.ConnectionGeneList.Count;
currentStats.CPPNneurons = seedGenome.NeuronGeneList.Count;
currentStats.generation = generation;
currentStats.run = run;
writeStats(sw, currentStats);
//break;
}
// sw.Flush();
}
sw.Close();
}
}
private void loadCCEAGenomesToolStripMenuItem_Click(object sender, EventArgs e)
{
using (var dlg = new OpenFileDialog())
{
dlg.Multiselect = true;
dlg.Filter = "*.xml|*.xml";
if (dlg.ShowDialog() != System.Windows.Forms.DialogResult.OK)
{
return;
}
var fileNames = dlg.FileNames;
if (fileNames.Length != 5)
{
MessageBox.Show("You must select 5 files!");
return;
}
Array.Sort(fileNames);
INetwork[] predNetworks = new INetwork[5];
for (int i = 0; i < predNetworks.Length; i++)
{
try
{
XmlDocument doc = new XmlDocument();
doc.Load(fileNames[i]);
var genome = XmlNeatGenomeReaderStatic.Read(doc);
var curSubstrate = new SkirmishSubstrate(5, 3, 5, HyperNEATParameters.substrateActivationFunction);
predNetworks[i] = curSubstrate.GenerateGenome(genome.Decode(null)).Decode(null);
}
catch (Exception ex)
{
MessageBox.Show(ex.ToString());
return;
}
}
this.isMulti = false;
SkirmishNetworkEvaluator.NetworkPerPred = predNetworks;
}
}
private void loadGenomeToolStripMenuItem_Click(object sender, EventArgs e)
{
DialogResult res = openFileDialog1.ShowDialog(this);
if (res == DialogResult.OK || res == DialogResult.Yes)
{
string filename = openFileDialog1.FileName;
try
{
XmlDocument doc = new XmlDocument();
doc.Load(filename);
seedGenome = XmlNeatGenomeReaderStatic.Read(doc);
setupSubstrate();
}
catch (Exception ex)
{
MessageBox.Show(ex.ToString());
}
}
}
private void loadGenomeToolStripMenuItem_Click(object sender, EventArgs e)
{
openFileDialog1.InitialDirectory = Environment.CurrentDirectory;
// Path.Combine(Environment.CurrentDirectory, @"..\..\..\SeedGenomes");
DialogResult res = openFileDialog1.ShowDialog(this);
if (res == DialogResult.OK || res == DialogResult.Yes)
{
string filename = openFileDialog1.FileName;
try
{
XmlDocument doc = new XmlDocument();
doc.Load(filename);
seedGenome = XmlNeatGenomeReaderStatic.Read(doc);
setupSubstrate();
}
catch (Exception ex)
{
MessageBox.Show(ex.ToString());
}
}
}
static void Main(string[] args)
{
NeatGenome seedGenome = null;
string filename = @"seedGenome.xml";
try
{
XmlDocument document = new XmlDocument();
document.Load(filename);
seedGenome = XmlNeatGenomeReaderStatic.Read(document);
}
catch (Exception e)
{
System.Console.WriteLine("Problem loading genome. \n" + e.Message);
}
string experimentName = "_2Pref";
for (int k = 3; k < 10; k++)
{
double maxFitness = 0;
int maxGenerations = 400; //150;
int populationSize = 300; //100;//150;
Thread extraWindowThread;
extraWindowThread = new System.Threading.Thread(delegate()
{
var myForm = new SharpNeatExperiments.Pacman.MyForm1();
System.Windows.Forms.Application.Run(myForm);
});
extraWindowThread.Start();
IExperiment exp = null;
//exp = new SUPGONLYExperiment(4,12,12,5,2);
//exp = new PacmanExperimentSUPG(4, 12, 12, 5, 2);
//exp = new SPMMExperiment(4, 12, 12, 5, 2);
//exp = new SPCExperiment(4, 12, 12, 5, 2);
exp = new SPSUPGExperiment(4, 12, 12, 5, 6);
StreamWriter SW;
SW = File.CreateText("logfile.txt");
//Change this line for different experiments
XmlDocument doc;
FileInfo oFileInfo;
IdGenerator idgen;
EvolutionAlgorithm ea;
if (seedGenome == null)
{
idgen = new IdGenerator();
ea = new EvolutionAlgorithm(new Population(idgen, GenomeFactory.CreateGenomeList(exp.DefaultNeatParameters, idgen, exp.InputNeuronCount, exp.OutputNeuronCount, exp.DefaultNeatParameters.pInitialPopulationInterconnections, populationSize)), exp.PopulationEvaluator, exp.DefaultNeatParameters);
}
else
{
idgen = new IdGeneratorFactory().CreateIdGenerator(seedGenome);
ea = new EvolutionAlgorithm(new Population(idgen, GenomeFactory.CreateGenomeList(seedGenome, exp.DefaultNeatParameters.populationSize, exp.DefaultNeatParameters, idgen)), exp.PopulationEvaluator, exp.DefaultNeatParameters);
}
bool isNSGAiiEnabled = false;
for (int j = 0; j < maxGenerations; j++)
{
DateTime dt = DateTime.Now;
if (isNSGAiiEnabled)
{
ea.PerformOneGenerationNSGAii();
}
else
{
ea.PerformOneGeneration();
}
if (ea.BestGenome.Fitness > maxFitness)
{
maxFitness = ea.BestGenome.Fitness;
Console.WriteLine(maxFitness + "maxFitness");
Console.WriteLine("objectiveFitness" + ea.BestGenome.MultiObjectiveFitness[0] + " " + ea.BestGenome.MultiObjectiveFitness[1]);
doc = new XmlDocument();
XmlGenomeWriterStatic.Write(doc, (NeatGenome)ea.BestGenome);
oFileInfo = new FileInfo("bestGenome" + j.ToString() + ".xml");
doc.Save(oFileInfo.FullName);
//MadsXMLWriter(j, maxFitness);
}
MadsXMLWriter(j, maxFitness, k, experimentName);
Console.WriteLine(ea.Generation.ToString() + " " + (maxFitness).ToString() + " " + (DateTime.Now.Subtract(dt)));
//Do any post-hoc stuff here
SW.WriteLine(ea.Generation.ToString() + " " + (maxFitness).ToString());
}
SW.Close();
//----- Write the genome to an XmlDocument.
doc = new XmlDocument();
XmlGenomeWriterStatic.Write(doc, (NeatGenome)ea.BestGenome, ActivationFunctionFactory.GetActivationFunction("NullFn"));
oFileInfo = new FileInfo("bestGenome" + experimentName + "_" + k + ".xml");
doc.Save(oFileInfo.FullName);
}
}
static void Main(string[] args)
{
string folder = "";
NeatGenome seedGenome = null;
string filename = null;
string shape = "triangle";
bool isMulti = false;
for (int j = 0; j < args.Length; j++)
{
if (j <= args.Length - 2)
{
switch (args[j])
{
case "-seed": filename = args[++j];
Console.WriteLine("Attempting to use seed from file " + filename);
break;
case "-folder": folder = args[++j];
Console.WriteLine("Attempting to output to folder " + folder);
break;
case "-shape": shape = args[++j];
Console.WriteLine("Attempting to do experiment with shape " + shape);
break;
case "-multi": isMulti = Boolean.Parse(args[++j]);
Console.WriteLine("Experiment is heterogeneous? " + isMulti);
break;
}
}
}
if (filename != null)
{
try
{
XmlDocument document = new XmlDocument();
document.Load(filename);
seedGenome = XmlNeatGenomeReaderStatic.Read(document);
}
catch (Exception e)
{
System.Console.WriteLine("Problem loading genome. \n" + e.Message);
}
}
double maxFitness = 0;
int maxGenerations = 1000;
int populationSize = 150;
int inputs = 4;
IExperiment exp = new SkirmishExperiment(inputs, 1, isMulti, shape);
StreamWriter SW;
SW = File.CreateText(folder + "logfile.txt");
XmlDocument doc;
FileInfo oFileInfo;
IdGenerator idgen;
EvolutionAlgorithm ea;
if (seedGenome == null)
{
idgen = new IdGenerator();
ea = new EvolutionAlgorithm(new Population(idgen, GenomeFactory.CreateGenomeList(exp.DefaultNeatParameters, idgen, exp.InputNeuronCount, exp.OutputNeuronCount, exp.DefaultNeatParameters.pInitialPopulationInterconnections, populationSize)), exp.PopulationEvaluator, exp.DefaultNeatParameters);
}
else
{
idgen = new IdGeneratorFactory().CreateIdGenerator(seedGenome);
ea = new EvolutionAlgorithm(new Population(idgen, GenomeFactory.CreateGenomeList(seedGenome, populationSize, exp.DefaultNeatParameters, idgen)), exp.PopulationEvaluator, exp.DefaultNeatParameters);
}
for (int j = 0; j < maxGenerations; j++)
{
DateTime dt = DateTime.Now;
ea.PerformOneGeneration();
if (ea.BestGenome.Fitness > maxFitness)
{
maxFitness = ea.BestGenome.Fitness;
doc = new XmlDocument();
XmlGenomeWriterStatic.Write(doc, (NeatGenome)ea.BestGenome);
oFileInfo = new FileInfo(folder + "bestGenome" + j.ToString() + ".xml");
doc.Save(oFileInfo.FullName);
// This will output the substrate, uncomment if you want that
/* doc = new XmlDocument();
* XmlGenomeWriterStatic.Write(doc, (NeatGenome) SkirmishNetworkEvaluator.substrate.generateMultiGenomeModulus(ea.BestGenome.Decode(null),5));
* oFileInfo = new FileInfo(folder + "bestNetwork" + j.ToString() + ".xml");
* doc.Save(oFileInfo.FullName);
*/
}
Console.WriteLine(ea.Generation.ToString() + " " + ea.BestGenome.Fitness + " " + (DateTime.Now.Subtract(dt)));
//Do any post-hoc stuff here
SW.WriteLine(ea.Generation.ToString() + " " + (maxFitness).ToString());
}
SW.Close();
doc = new XmlDocument();
XmlGenomeWriterStatic.Write(doc, (NeatGenome)ea.BestGenome, ActivationFunctionFactory.GetActivationFunction("NullFn"));
oFileInfo = new FileInfo(folder + "bestGenome.xml");
doc.Save(oFileInfo.FullName);
}
public void showMovie(string genomeFile, int type)
{
if (true) // set to false to use hardcoded output values from a file
{
XmlDocument doc = new XmlDocument();
doc.Load(genomeFile);
NeatGenome genome = XmlNeatGenomeReaderStatic.Read(doc);
INetwork tempNet = null;
INetwork cppn = null;
NeatGenome tempGenome = null;
Substrate substrate;
if (type == 0)
{
substrate = new CTRNNSubstrate(4, 12, 8, HyperNEATParameters.substrateActivationFunction);
}
else if (type == 1)
{
substrate = new SUPGSubstrate(4, 12, 12, HyperNEATParameters.substrateActivationFunction);
}
else
{
doClune = true;
substrate = new CluneSubstrate(20, 20, 20, HyperNEATParameters.substrateActivationFunction);
}
cppn = genome.Decode(null);
tempGenome = substrate.generateGenome(cppn);
tempNet = tempGenome.Decode(null);
Controller controller;
if (type == 0)
{
controller = new Controller(tempNet);
}
else if (type == 1)
{
controller = new Controller(tempNet, true, tempGenome, cppn, ((SUPGSubstrate)substrate).getSUPGMap());
}
else
{
controller = new Controller(tempNet);
}
using (var domain = new Domain())
{
domain.Initialize(controller);
domain.RunDraw();
}
}
else
{
using (var domain = new Domain())
{
domain.Initialize();
domain.RunDraw();
}
}
}
private void startEvolutionToolStripMenuItem_Click(object sender, EventArgs e)
{
NeatGenome seedGenome = null;
if (EvoSeedFileName != null)
{
try
{
XmlDocument document = new XmlDocument();
document.Load(EvoSeedFileName);
seedGenome = XmlNeatGenomeReaderStatic.Read(document);
}
catch (Exception ex)
{
System.Console.WriteLine("Problem loading genome. \n" + ex.Message);
}
}
double maxFitness = 0;
int maxGenerations = 1000;
int populationSize = 150;
int inputs = 4;
IExperiment exp = new SkirmishExperiment(inputs, 1, EvoIsMulti, EvoShape);
w = SkirmishNetworkEvaluator.lWorldVar(network, 125);
timer = 0;
StreamWriter SW;
SW = File.CreateText(EvoOutputLogFolder + "logfile.txt");
XmlDocument doc;
FileInfo oFileInfo;
IdGenerator idgen;
EvolutionAlgorithm ea;
if (seedGenome == null)
{
idgen = new IdGenerator();
ea = new EvolutionAlgorithm(
new Population(idgen,
GenomeFactory.CreateGenomeList(
exp.DefaultNeatParameters, idgen,
exp.InputNeuronCount, exp.OutputNeuronCount,
exp.DefaultNeatParameters.pInitialPopulationInterconnections,
populationSize)),
exp.PopulationEvaluator, exp.DefaultNeatParameters);
}
else
{
idgen = new IdGeneratorFactory().CreateIdGenerator(seedGenome);
ea = new EvolutionAlgorithm(new Population(idgen, GenomeFactory.CreateGenomeList(seedGenome, populationSize, exp.DefaultNeatParameters, idgen)), exp.PopulationEvaluator, exp.DefaultNeatParameters);
}
for (int j = 0; j < maxGenerations; j++)
{
DateTime dt = DateTime.Now;
ea.PerformOneGeneration();
if (ea.BestGenome.Fitness > maxFitness)
{
maxFitness = ea.BestGenome.Fitness;
doc = new XmlDocument();
XmlGenomeWriterStatic.Write(doc, (NeatGenome)ea.BestGenome);
oFileInfo = new FileInfo(EvoOutputLogFolder + "bestGenome" + j.ToString() + ".xml");
doc.Save(oFileInfo.FullName);
// This will output the substrate, uncomment if you want that
/* doc = new XmlDocument();
* XmlGenomeWriterStatic.Write(doc, (NeatGenome) SkirmishNetworkEvaluator.substrate.generateMultiGenomeModulus(ea.BestGenome.Decode(null),5));
* oFileInfo = new FileInfo(folder + "bestNetwork" + j.ToString() + ".xml");
* doc.Save(oFileInfo.FullName);
*/
}
Console.WriteLine(ea.Generation.ToString() + " " + ea.BestGenome.Fitness + " " + (DateTime.Now.Subtract(dt)));
//Do any post-hoc stuff here
SW.WriteLine(ea.Generation.ToString() + " " + (maxFitness).ToString());
}
SW.Close();
doc = new XmlDocument();
XmlGenomeWriterStatic.Write(doc, (NeatGenome)ea.BestGenome, ActivationFunctionFactory.GetActivationFunction("NullFn"));
oFileInfo = new FileInfo(EvoOutputLogFolder + "bestGenome.xml");
doc.Save(oFileInfo.FullName);
}
