/// <summary>
/// base matrix assembly
/// </summary>
/// <typeparam name="T"></typeparam>
/// <param name="OpMatrix"></param>
/// <param name="OpAffine"></param>
/// <param name="RowMapping"></param>
/// <param name="ColMapping"></param>
/// <param name="CurrentState"></param>
/// <param name="ParamsMap"></param>
/// <param name="AgglomeratedCellLengthScales"></param>
/// <param name="time"></param>
public void AssembleMatrix <T>(BlockMsrMatrix OpMatrix, double[] OpAffine,
UnsetteledCoordinateMapping RowMapping, UnsetteledCoordinateMapping ColMapping,
IEnumerable <T> CurrentState, IList <DGField> ParamsMap, Dictionary <SpeciesId, MultidimensionalArray> AgglomeratedCellLengthScales,
double time) where T : DGField
{
// checks
if (ColMapping.BasisS.Count != m_XOp.DomainVar.Count)
{
throw new ArgumentException();
}
if (RowMapping.BasisS.Count != m_XOp.CodomainVar.Count)
{
throw new ArgumentException();
}
if (OpMatrix == null && CurrentState == null)
{
throw new ArgumentException();
}
SpeciesId[] SpcToCompute = AgglomeratedCellLengthScales.Keys.ToArray();
if (OpMatrix != null)
{
XSpatialOperatorMk2.XEvaluatorLinear mtxBuilder = m_XOp.GetMatrixBuilder(LsTrk, ColMapping, ParamsMap, RowMapping, SpcToCompute);
foreach (var kv in AgglomeratedCellLengthScales)
{
mtxBuilder.SpeciesOperatorCoefficients[kv.Key].CellLengthScales = kv.Value;
}
mtxBuilder.time = time;
mtxBuilder.ComputeMatrix(OpMatrix, OpAffine);
}
else
{
XSpatialOperatorMk2.XEvaluatorNonlin eval = m_XOp.GetEvaluatorEx(this.LsTrk,
CurrentState.ToArray(), ParamsMap, RowMapping,
SpcToCompute);
foreach (var kv in AgglomeratedCellLengthScales)
{
eval.SpeciesOperatorCoefficients[kv.Key].CellLengthScales = kv.Value;
}
eval.time = time;
eval.Evaluate(1.0, 1.0, OpAffine);
}
}
private void AssembleMatrix(double MU_A, double MU_B, out BlockMsrMatrix M, out double[] b, out MultiphaseCellAgglomerator agg, out MassMatrixFactory massFact)
{
using (var tr = new FuncTrace()) {
// create operator
// ===============
if (this.Control.SetDefaultDiriBndCnd)
{
this.Control.xLaplaceBCs.g_Diri = ((CommonParamsBnd inp) => 0.0);
this.Control.xLaplaceBCs.IsDirichlet = (inp => true);
}
double D = this.GridData.SpatialDimension;
int p = u.Basis.Degree;
double penalty_base = (p + 1) * (p + D) / D;
double penalty_multiplyer = base.Control.penalty_multiplyer;
XQuadFactoryHelper.MomentFittingVariants momentFittingVariant;
if (D == 3)
{
momentFittingVariant = XQuadFactoryHelper.MomentFittingVariants.Classic;
}
momentFittingVariant = this.Control.CutCellQuadratureType;
int order = this.u.Basis.Degree * 2;
Op = new XSpatialOperatorMk2(1, 1, (A, B, C) => order, this.LsTrk.SpeciesNames, "u", "c1");
var lengthScales = ((BoSSS.Foundation.Grid.Classic.GridData)GridData).Cells.PenaltyLengthScales;
var lap = new XLaplace_Bulk(this.LsTrk, penalty_multiplyer * penalty_base, "u", this.Control.xLaplaceBCs, 1.0, MU_A, MU_B, lengthScales, this.Control.ViscosityMode);
Op.EquationComponents["c1"].Add(lap); // Bulk form
Op.EquationComponents["c1"].Add(new XLaplace_Interface(this.LsTrk, MU_A, MU_B, penalty_base * 2, this.Control.ViscosityMode)); // coupling form
Op.Commit();
// create agglomeration
// ====================
var map = new UnsetteledCoordinateMapping(u.Basis);
//agg = new MultiphaseCellAgglomerator(
// new CutCellMetrics(momentFittingVariant,
// QuadOrderFunc.SumOfMaxDegrees(RoundUp: true)(map.BasisS.Select(bs => bs.Degree).ToArray(), new int[0], map.BasisS.Select(bs => bs.Degree).ToArray()),
// //this.HMFDegree,
// LsTrk, this.LsTrk.SpeciesIdS.ToArray()),
// this.Control.AgglomerationThreshold, false);
agg = LsTrk.GetAgglomerator(this.LsTrk.SpeciesIdS.ToArray(), order, this.Control.AgglomerationThreshold);
// compute matrix
// =============
using (new BlockTrace("XdgMatrixAssembly", tr)) {
M = new BlockMsrMatrix(map, map);
b = new double[M.RowPartitioning.LocalLength];
//Op.ComputeMatrixEx(LsTrk,
// map, null, map,
// M, b, false, 0.0, true,
// agg.CellLengthScales, null, null, //out massFact,
// this.LsTrk.SpeciesIdS.ToArray());
XSpatialOperatorMk2.XEvaluatorLinear mtxBuilder = Op.GetMatrixBuilder(this.LsTrk, map, null, map);
mtxBuilder.CellLengthScales.AddRange(agg.CellLengthScales);
mtxBuilder.time = 0.0;
mtxBuilder.MPITtransceive = true;
mtxBuilder.ComputeMatrix(M, b);
}
// compare with linear evaluation
// ==============================
DGField[] testDomainFieldS = map.BasisS.Select(bb => new XDGField(bb as XDGBasis)).ToArray();
CoordinateVector test = new CoordinateVector(testDomainFieldS);
DGField[] errFieldS = map.BasisS.Select(bb => new XDGField(bb as XDGBasis)).ToArray();
CoordinateVector Err = new CoordinateVector(errFieldS);
var eval = Op.GetEvaluatorEx(LsTrk,
testDomainFieldS, null, map);
eval.CellLengthScales.AddRange(agg.CellLengthScales);
eval.time = 0.0;
int L = test.Count;
Random r = new Random();
for (int i = 0; i < L; i++)
{
test[i] = r.NextDouble();
}
double[] R1 = new double[L];
double[] R2 = new double[L];
eval.Evaluate(1.0, 1.0, R1);
R2.AccV(1.0, b);
M.SpMV(1.0, test, 1.0, R2);
Err.AccV(+1.0, R1);
Err.AccV(-1.0, R2);
double ErrDist = GenericBlas.L2DistPow2(R1, R2).MPISum().Sqrt();
double Ref = test.L2NormPow2().MPISum().Sqrt();
Assert.LessOrEqual(ErrDist, Ref * 1.0e-5, "Mismatch between explicit evaluation of XDG operator and matrix.");
// agglomeration wahnsinn
// ======================
agg.ManipulateMatrixAndRHS(M, b, map, map);
foreach (var S in this.LsTrk.SpeciesNames)
{
Console.WriteLine(" Species {0}: no of agglomerated cells: {1}",
S, agg.GetAgglomerator(this.LsTrk.GetSpeciesId(S)).AggInfo.SourceCells.NoOfItemsLocally);
}
// mass matrix factory
// ===================
Basis maxB = map.BasisS.ElementAtMax(bss => bss.Degree);
//massFact = new MassMatrixFactory(maxB, agg);
massFact = LsTrk.GetXDGSpaceMetrics(this.LsTrk.SpeciesIdS.ToArray(), order).MassMatrixFactory;
}
}