private void RefreshPlateList() { VM.PlateList.Clear(); VM.CurrentPlate = null; if (VM.CurrentProject == null) { return; } ObservableCollection <PlateContainer> plateList = null; bool success = m_wgDB.GetAllPlatesForProject(VM.CurrentProject.ProjectID); if (success) { plateList = m_wgDB.m_plateList; } if (plateList == null) { return; } foreach (PlateContainer plate in plateList) { PlateExplorer_ViewModel.PlateListItem pli = new PlateExplorer_ViewModel.PlateListItem(); pli.Description = plate.Barcode.PadRight(15, ' ') + " - " + plate.Description; pli.PlateID = plate.PlateID; VM.PlateList.Add(pli); } }
public bool GetPlateList(int projectID) { bool success = true; if (m_db.GetAllPlatesForProject(projectID)) { m_vm.plates = m_db.m_plateList; } else { success = false; } return(success); }
public bool GetPlateList(int projectID) { #if (SIMULATE) m_vm.plates.Clear(); PlateContainer plate = new PlateContainer(); plate.Barcode = "123456"; plate.BarcodeValid = true; plate.Description = "plate 1"; plate.IsPublic = true; plate.OwnerID = 1; plate.PlateID = 1; plate.PlateIDResetBehavior = PLATE_ID_RESET_BEHAVIOR.CONSTANT; plate.PlateTypeID = 1; plate.ProjectID = 1; m_vm.plates.Add(plate); plate = new PlateContainer(); plate.Barcode = "456123"; plate.BarcodeValid = true; plate.Description = "plate 2"; plate.IsPublic = true; plate.OwnerID = 2; plate.PlateID = 2; plate.PlateIDResetBehavior = PLATE_ID_RESET_BEHAVIOR.CONSTANT; plate.PlateTypeID = 2; plate.ProjectID = 2; m_vm.plates.Add(plate); return(true); #else bool success = true; if (m_db.GetAllPlatesForProject(projectID)) { m_vm.plates = m_db.m_plateList; } else { success = false; } return(success); #endif }
void LoadSimulationConfiguration() { // m_iParams = iParams; // m_project = project; // m_experimentPlate = plate; // m_method = method; // m_mask = mask; // m_plateType = plateType; // m_indicatorList = indicatorList; // m_compoundPlateList = compoundPlateList; // m_controlSubtractionWellList = controlSubtractionWellList; //m_numFoFrames = numFoFrames; //m_dynamicRatioNumerator = dynamicRatioNumerator; //m_dynamicRatioDenominator = dynamicRatioDenominator; //ChartArray.BuildChartArray(mask.Rows, mask.Cols, m_indicatorList); //////////////////////// // set up project m_project = null; bool success = m_wgDB.GetAllProjects(false); foreach (ProjectContainer project in m_wgDB.m_projectList) { if (project.Description.Equals("Debug", StringComparison.OrdinalIgnoreCase)) { m_project = project; break; } } if (m_project == null) // not found in database, so create it { m_project = new ProjectContainer(); m_project.Description = "Debug"; m_project.TimeStamp = DateTime.Now; m_project.Archived = false; success = m_wgDB.InsertProject(ref m_project); } //////////////////////// // set up plateType m_plateType = null; success = m_wgDB.GetAllPlateTypes(); if (m_wgDB.m_plateTypeList.Count() > 0) { m_plateType = m_wgDB.m_plateTypeList.ElementAt(0); } else { // create a new plateType m_plateType = new PlateTypeContainer(); m_plateType.Cols = 24; m_plateType.Description = "Debug"; m_plateType.IsDefault = false; m_plateType.Rows = 16; success = m_wgDB.InsertPlateType(ref m_plateType); } //////////////////////// // set up experiment plate m_experimentPlate = null; success = m_wgDB.GetAllPlatesForProject(m_project.ProjectID); if (m_wgDB.m_plateList.Count() > 0) { m_experimentPlate = m_wgDB.m_plateList.ElementAt(0); } else { // create a new plate m_experimentPlate = new PlateContainer(); m_experimentPlate.Barcode = "12345678"; m_experimentPlate.Description = "Debug"; m_experimentPlate.IsPublic = true; m_experimentPlate.OwnerID = GlobalVars.UserID; m_experimentPlate.PlateTypeID = m_plateType.PlateTypeID; m_experimentPlate.ProjectID = m_project.ProjectID; success = m_wgDB.InsertPlate(ref m_experimentPlate); } //////////////////////// // set up method m_method = null; success = m_wgDB.GetAllMethodsForUser(GlobalVars.UserID); foreach (MethodContainer method in m_wgDB.m_methodList) { if (method.Description.Equals("Debug", StringComparison.OrdinalIgnoreCase)) { m_method = method; break; } } if (m_method == null) { m_method = new MethodContainer(); m_method.BravoMethodFile = ""; m_method.Description = "Debug"; m_method.IsPublic = true; m_method.OwnerID = GlobalVars.UserID; success = m_wgDB.InsertMethod(ref m_method); } success = m_wgDB.GetAllIndicatorsForMethod(m_method.MethodID); if (m_wgDB.m_indicatorList.Count < 1) { // create indicators for this new method IndicatorContainer ind = new IndicatorContainer(); ind.Description = "Debug"; ind.EmissionsFilterPosition = 6; ind.ExcitationFilterPosition = 4; ind.MethodID = m_method.MethodID; ind.SignalType = SIGNAL_TYPE.UP; success = m_wgDB.InsertIndicator(ref ind); } //////////////////////// // set up experiment m_experiment = null; ObservableCollection <ExperimentContainer> expList; success = m_wgDB.GetAllExperimentsForPlate(m_experimentPlate.PlateID, out expList); if (expList.Count() > 0) { m_experiment = expList.ElementAt(0); } else { m_experiment = new ExperimentContainer(); m_experiment.Description = "Debug"; m_experiment.HorzBinning = 1; m_experiment.MethodID = m_method.MethodID; m_experiment.PlateID = m_experimentPlate.PlateID; m_experiment.ROI_Height = GlobalVars.PixelHeight; m_experiment.ROI_Width = GlobalVars.PixelWidth; m_experiment.ROI_Origin_X = 1; m_experiment.ROI_Origin_Y = 1; m_experiment.TimeStamp = DateTime.Now; m_experiment.VertBinning = 1; success = m_wgDB.InsertExperiment(ref m_experiment); } //////////////////////// // set up mask m_mask = null; success = m_wgDB.GetAllMasksForPlateType(m_experimentPlate.PlateTypeID); if (m_wgDB.m_maskList.Count() > 0) { m_mask = m_wgDB.m_maskList.ElementAt(0); } else { // create a new mask m_mask = new MaskContainer(); m_mask.Angle = 0.0; m_mask.Cols = 24; m_mask.Description = "Debug"; m_mask.IsDefault = false; m_mask.NumEllipseVertices = 24; m_mask.PlateTypeID = m_experimentPlate.PlateTypeID; m_mask.ReferenceImageID = 0; m_mask.Rows = 16; m_mask.Shape = 0; m_mask.XOffset = 28; m_mask.XSize = 28; m_mask.XStep = 41.522; m_mask.YOffset = 190; m_mask.YSize = 28; m_mask.YStep = 41.467; success = m_wgDB.InsertMask(ref m_mask); } //////////////////////////////////// // setup test indicator(s) m_indicatorList = new ObservableCollection <ExperimentIndicatorContainer>(); ObservableCollection <ExperimentIndicatorContainer> expIndList; success = m_wgDB.GetAllExperimentIndicatorsForExperiment(m_experiment.ExperimentID, out expIndList); if (expIndList.Count > 0) { foreach (ExperimentIndicatorContainer ex in expIndList) { m_indicatorList.Add(ex); } } else { success = m_wgDB.GetAllIndicatorsForMethod(m_method.MethodID); foreach (IndicatorContainer ind in m_wgDB.m_indicatorList) { ExperimentIndicatorContainer exInd = new ExperimentIndicatorContainer(); exInd.Description = ind.Description; FilterContainer filter; success = m_wgDB.GetExcitationFilterAtPosition(ind.ExcitationFilterPosition, out filter); exInd.ExcitationFilterDesc = filter.Description; success = m_wgDB.GetEmissionFilterAtPosition(ind.EmissionsFilterPosition, out filter); exInd.EmissionFilterDesc = filter.Description; exInd.EmissionFilterPos = ind.EmissionsFilterPosition; exInd.ExcitationFilterPos = ind.ExcitationFilterPosition; exInd.ExperimentID = m_experiment.ExperimentID; exInd.Exposure = 150; exInd.Gain = 5; exInd.MaskID = m_mask.MaskID; exInd.SignalType = SIGNAL_TYPE.UP; exInd.Verified = true; success = m_wgDB.InsertExperimentIndicator(ref exInd); m_indicatorList.Add(exInd); } } //////////////////////////////////// // compound plates m_compoundPlateList = new ObservableCollection <ExperimentCompoundPlateContainer>(); //////////////////////////////////// // control subtraction well list m_controlSubtractionWellList = new ObservableCollection <Tuple <int, int> >(); // all wells in last row = control wells for (int c = 0; c < m_mask.Cols; c++) { m_controlSubtractionWellList.Add(Tuple.Create(m_mask.Rows - 1, c)); } //////////////////////////////////// //m_numFoFrames = numFoFrames; m_numFoFrames = 5; if (m_indicatorList.Count() > 1) { //////////////////////////////////// //m_dynamicRatioNumerator = dynamicRatioNumerator; m_dynamicRatioNumerator = m_indicatorList.ElementAt(0); //////////////////////////////////// //m_dynamicRatioDenominator = dynamicRatioDenominator; m_dynamicRatioDenominator = m_indicatorList.ElementAt(1); } else { m_dynamicRatioNumerator = new ExperimentIndicatorContainer(); m_dynamicRatioNumerator.ExperimentIndicatorID = 0; m_dynamicRatioDenominator = new ExperimentIndicatorContainer(); m_dynamicRatioDenominator.ExperimentIndicatorID = 0; } if (m_iParams == null) { m_iParams = new ImagingParameters(); } m_iParams.maxPixelValue = GlobalVars.MaxPixelValue; m_iParams.imageWidth = GlobalVars.PixelWidth; m_iParams.imageHeight = GlobalVars.PixelHeight; m_iParams.Image_StartCol = 1; m_iParams.Image_EndCol = GlobalVars.PixelWidth; m_iParams.Image_StartRow = 1; m_iParams.Image_EndRow = GlobalVars.PixelHeight; m_iParams.BravoMethodFilename = ""; m_iParams.CameraTemperature = GlobalVars.CameraTargetTemperature; m_iParams.HorzBinning = 1; m_iParams.VertBinning = 1; m_iParams.EmissionFilterChangeSpeed = GlobalVars.FilterChangeSpeed; m_iParams.ExcitationFilterChangeSpeed = GlobalVars.FilterChangeSpeed; m_iParams.LightIntensity = 100; m_iParams.NumImages = 1000000; // artificial limit on number of images m_iParams.NumIndicators = m_indicatorList.Count; m_iParams.SyncExcitationFilterWithImaging = true; m_iParams.CycleTime = new int[m_indicatorList.Count]; m_iParams.EmissionFilter = new byte[m_indicatorList.Count]; m_iParams.ExcitationFilter = new byte[m_indicatorList.Count]; m_iParams.Exposure = new float[m_indicatorList.Count]; m_iParams.Gain = new int[m_indicatorList.Count]; m_iParams.ExperimentIndicatorID = new int[m_indicatorList.Count]; m_iParams.IndicatorName = new string[m_indicatorList.Count]; m_iParams.LampShutterIsOpen = new bool[m_indicatorList.Count]; int i = 0; foreach (ExperimentIndicatorContainer ind in m_indicatorList) { m_iParams.CycleTime[i] = 1000; m_iParams.EmissionFilter[i] = (byte)ind.EmissionFilterPos; m_iParams.ExcitationFilter[i] = (byte)ind.ExcitationFilterPos; m_iParams.Exposure[i] = (float)ind.Exposure / 1000; m_iParams.Gain[i] = ind.Gain; m_iParams.ExperimentIndicatorID[i] = 0; // created by the RunExperiment object when the experiment is run m_iParams.IndicatorName[i] = ind.Description; m_iParams.LampShutterIsOpen[i] = true; m_iParams.ExperimentIndicatorID[i] = ind.ExperimentIndicatorID; i++; } }