public async Task UPTT21()
{
string testName = "UPTT21";
//Arrange
HttpClient client = _factory.CreateClient();
UnpairedTTestAnalysisModel model = new UnpairedTTestAnalysisModel();
model.DatasetID = _factory.SheetNames.Single(x => x.Value == "Unpaired t-test").Key;
model.Response = "PVTestresponse2";
model.ResponseTransformation = "None";
model.Treatment = "PVTestgroup";
model.NormalProbabilityPlotSelected = true;
model.ResidualsVsPredictedPlotSelected = true;
//Act
StatsOutput statsOutput = await Helpers.SubmitAnalysis(client, "UnpairedTTestAnalysis", new FormUrlEncodedContent(model.ToKeyValue()));
Helpers.SaveTestOutput("UnpairedTTestAnalysis", model, testName, statsOutput);
//Assert
string expectedHtml = File.ReadAllText(Path.Combine("ExpectedResults", "UnpairedTTestAnalysis", testName + ".html"));
Assert.Equal(Helpers.RemoveAllImageNodes(expectedHtml), Helpers.RemoveAllImageNodes(statsOutput.HtmlResults));
}
public async Task UPTT13()
{
string testName = "UPTT13";
//Arrange
HttpClient client = _factory.CreateClient();
UnpairedTTestAnalysisModel model = new UnpairedTTestAnalysisModel();
model.DatasetID = _factory.SheetNames.Single(x => x.Value == "Unpaired t-test").Key;
model.Response = "Resp 1";
model.ResponseTransformation = "None";
model.Treatment = "Treat(5";
model.NormalProbabilityPlotSelected = true;
model.ResidualsVsPredictedPlotSelected = true;
//Act
HttpResponseMessage response = await client.PostAsync("Analyses/UnpairedTTestAnalysis", new FormUrlEncodedContent(model.ToKeyValue()));
IEnumerable <string> errors = await Helpers.ExtractErrors(response);
//Assert
Assert.Contains("The treatment (Treat(5) has more than two levels, please analyse using Single Measure Parametric Analysis module.", errors);
Helpers.SaveOutput("UnpairedTTestAnalysis", testName, errors);
}
public async Task UPTT11()
{
string testName = "UPTT11";
//Arrange
HttpClient client = _factory.CreateClient();
UnpairedTTestAnalysisModel model = new UnpairedTTestAnalysisModel();
model.DatasetID = _factory.SheetNames.Single(x => x.Value == "Unpaired t-test").Key;
model.Response = "Resp 7";
model.ResponseTransformation = "ArcSine";
model.Treatment = "Treat1";
model.NormalProbabilityPlotSelected = true;
model.ResidualsVsPredictedPlotSelected = true;
//Act
HttpResponseMessage response = await client.PostAsync("Analyses/UnpairedTTestAnalysis", new FormUrlEncodedContent(model.ToKeyValue()));
IEnumerable <string> warnings = await Helpers.ExtractWarnings(response);
//Assert
Assert.Contains("You have ArcSine transformed the Resp 7 variable. Unfortunately some of the Resp 7 values are <0 or >1. These values have been ignored in the analysis as it is not possible to transform them.", warnings);
Helpers.SaveOutput("UnpairedTTestAnalysis", testName, warnings);
}
public void GetCommandLineArguments_ReturnsCorrectString()
{
//Arrange
System.Threading.Thread.CurrentThread.CurrentCulture = CultureInfo.InvariantCulture;
UnpairedTTestAnalysisModel sut = GetModel(GetDataset());
//Act
string result = sut.GetCommandLineArguments();
//Assert
Assert.Equal("Respivs_sp_ivs1 None Treat1 Y Y N N B 0.05", result);
}
public void ScriptFileName_ReturnsCorrectString()
{
//Arrange
System.Threading.Thread.CurrentThread.CurrentCulture = CultureInfo.InvariantCulture;
UnpairedTTestAnalysisModel sut = new UnpairedTTestAnalysisModel();
//Act
string result = sut.ScriptFileName;
//Assert
Assert.Equal("UnpairedTTestAnalysis", result);
}
public void LoadArguments_ReturnsCorrectArguments()
{
//Arrange
System.Threading.Thread.CurrentThread.CurrentCulture = CultureInfo.InvariantCulture;
UnpairedTTestAnalysisModel sut = new UnpairedTTestAnalysisModel(GetDataset());
List <Argument> arguments = new List <Argument>();
arguments.Add(new Argument {
Name = "Response", Value = "Resp 1"
});
arguments.Add(new Argument {
Name = "Treatment", Value = "Treat1"
});
arguments.Add(new Argument {
Name = "ResponseTransformation", Value = "Log10"
});
arguments.Add(new Argument {
Name = "NormalProbabilityPlotSelected", Value = "False"
});
arguments.Add(new Argument {
Name = "ResidualsVsPredictedPlotSelected", Value = "True"
});
arguments.Add(new Argument {
Name = "UnequalVarianceCaseSelected", Value = "False"
});
arguments.Add(new Argument {
Name = "EqualVarianceCaseSelected", Value = "True"
});
arguments.Add(new Argument {
Name = "Significance", Value = "0.05"
});
arguments.Add(new Argument {
Name = "ControlGroup", Value = "B"
});
//Act
sut.LoadArguments(arguments);
//Assert
Assert.Equal("Resp 1", sut.Response);
Assert.Equal("Treat1", sut.Treatment);
Assert.Equal("Log10", sut.ResponseTransformation);
Assert.False(sut.NormalProbabilityPlotSelected);
Assert.True(sut.ResidualsVsPredictedPlotSelected);
Assert.False(sut.UnequalVarianceCaseSelected);
Assert.True(sut.EqualVarianceCaseSelected);
Assert.Equal("0.05", sut.Significance);
Assert.Equal("B", sut.ControlGroup);
}
public void SignificancesList_ReturnsCorrectList()
{
//Arrange
System.Threading.Thread.CurrentThread.CurrentCulture = CultureInfo.InvariantCulture;
UnpairedTTestAnalysisModel sut = new UnpairedTTestAnalysisModel();
//Act
IEnumerable <string> result = sut.SignificancesList;
//Assert
Assert.IsAssignableFrom <IEnumerable <string> >(result);
Assert.Equal(new List <string>()
{
"0.1", "0.05", "0.025", "0.01", "0.001"
}, result);
}
public void TransformationsList_ReturnsCorrectList()
{
//Arrange
System.Threading.Thread.CurrentThread.CurrentCulture = CultureInfo.InvariantCulture;
UnpairedTTestAnalysisModel sut = new UnpairedTTestAnalysisModel();
//Act
IEnumerable <string> result = sut.TransformationsList;
//Assert
Assert.IsAssignableFrom <IEnumerable <string> >(result);
Assert.Equal(new List <string>()
{
"None", "Log10", "Loge", "Square Root", "ArcSine", "Rank"
}, result);
}
public void GetArguments_ReturnsCorrectArguments()
{
//Arrange
System.Threading.Thread.CurrentThread.CurrentCulture = CultureInfo.InvariantCulture;
UnpairedTTestAnalysisModel sut = GetModel(GetDataset());
//Act
List <Argument> result = sut.GetArguments().ToList();
//Assert
var response = result.Single(x => x.Name == "Response");
Assert.Equal("Resp 1", response.Value);
var treatment = result.Single(x => x.Name == "Treatment");
Assert.Equal("Treat1", treatment.Value);
var responseTransformation = result.Single(x => x.Name == "ResponseTransformation");
Assert.Equal("None", responseTransformation.Value);
var equalVarianceCaseSelected = result.Single(x => x.Name == "EqualVarianceCaseSelected");
Assert.Equal("True", equalVarianceCaseSelected.Value);
var normalProbabilityPlotSelected = result.Single(x => x.Name == "NormalProbabilityPlotSelected");
Assert.Equal("False", normalProbabilityPlotSelected.Value);
var residualsVsPredictedPlotSelected = result.Single(x => x.Name == "ResidualsVsPredictedPlotSelected");
Assert.Equal("False", residualsVsPredictedPlotSelected.Value);
var unequalVarianceCaseSelected = result.Single(x => x.Name == "UnequalVarianceCaseSelected");
Assert.Equal("True", unequalVarianceCaseSelected.Value);
var significance = result.Single(x => x.Name == "Significance");
Assert.Equal("0.05", significance.Value);
var controlGroup = result.Single(x => x.Name == "ControlGroup");
Assert.Equal("B", controlGroup.Value);
}
private UnpairedTTestAnalysisModel GetModel(IDataset dataset)
{
var model = new UnpairedTTestAnalysisModel(dataset)
{
ControlGroup = "B",
EqualVarianceCaseSelected = true,
NormalProbabilityPlotSelected = false,
ResidualsVsPredictedPlotSelected = false,
Response = "Resp 1",
ResponseTransformation = "None",
Significance = "0.05",
Treatment = "Treat1",
UnequalVarianceCaseSelected = true
};
return(model);
}
public void ExportData_ReturnsCorrectStringArray()
{
//Arrange
System.Threading.Thread.CurrentThread.CurrentCulture = CultureInfo.InvariantCulture;
Mock <IDataset> mockDataset = new Mock <IDataset>();
mockDataset.Setup(x => x.DatasetID).Returns(1);
mockDataset.Setup(x => x.DatasetToDataTable()).Returns(GetTestDataTable());
UnpairedTTestAnalysisModel sut = GetModel(mockDataset.Object);
//Act
string[] result = sut.ExportData();
//Assert
Assert.Equal("Respivs_sp_ivs1,Treat1", result[0]);
Assert.Equal(13, result.Count()); //as blank reponses are removed
Assert.StartsWith("234,B", result[12]);
}
public async Task UPTT6()
{
string testName = "UPTT6";
//Arrange
HttpClient client = _factory.CreateClient();
UnpairedTTestAnalysisModel model = new UnpairedTTestAnalysisModel();
model.DatasetID = _factory.SheetNames.Single(x => x.Value == "Unpaired t-test").Key;
model.Response = "Resp 5";
model.Treatment = "Treat1";
model.NormalProbabilityPlotSelected = true;
model.ResidualsVsPredictedPlotSelected = true;
//Act
HttpResponseMessage response = await client.PostAsync("Analyses/UnpairedTTestAnalysis", new FormUrlEncodedContent(model.ToKeyValue()));
IEnumerable <string> warnings = await Helpers.ExtractWarnings(response);
//Assert
Assert.Contains("The Response (Resp 5) contains missing data. Any rows of the dataset that contain missing responses will be excluded prior to the analysis.", warnings);
Helpers.SaveOutput("UnpairedTTestAnalysis", testName, warnings);
}
public async Task UPTT3()
{
string testName = "UPTT3";
//Arrange
HttpClient client = _factory.CreateClient();
UnpairedTTestAnalysisModel model = new UnpairedTTestAnalysisModel();
model.DatasetID = _factory.SheetNames.Single(x => x.Value == "Unpaired t-test").Key;
model.Response = "Resp 3";
model.Treatment = "Treat1";
model.NormalProbabilityPlotSelected = true;
model.ResidualsVsPredictedPlotSelected = true;
//Act
HttpResponseMessage response = await client.PostAsync("Analyses/UnpairedTTestAnalysis", new FormUrlEncodedContent(model.ToKeyValue()));
IEnumerable <string> errors = await Helpers.ExtractErrors(response);
//Assert
Assert.Contains("There are no observations recorded on the levels of the Treatment factor (Treat1). Please amend the dataset prior to running the analysis.", errors);
Helpers.SaveOutput("UnpairedTTestAnalysis", testName, errors);
}
public async Task UPTT1()
{
string testName = "UPTT1";
//Arrange
HttpClient client = _factory.CreateClient();
UnpairedTTestAnalysisModel model = new UnpairedTTestAnalysisModel();
model.DatasetID = _factory.SheetNames.Single(x => x.Value == "Unpaired t-test").Key;
model.Response = "Resp 1";
model.Treatment = null;
model.NormalProbabilityPlotSelected = true;
model.ResidualsVsPredictedPlotSelected = true;
//Act
HttpResponseMessage response = await client.PostAsync("Analyses/UnpairedTTestAnalysis", new FormUrlEncodedContent(model.ToKeyValue()));
IEnumerable <string> errors = await Helpers.ExtractErrors(response);
//Assert
Assert.Contains("The Treatment factor field is required.", errors);
Helpers.SaveOutput("UnpairedTTestAnalysis", testName, errors);
}
public async Task UPTT4()
{
string testName = "UPTT4";
//Arrange
HttpClient client = _factory.CreateClient();
UnpairedTTestAnalysisModel model = new UnpairedTTestAnalysisModel();
model.DatasetID = _factory.SheetNames.Single(x => x.Value == "Unpaired t-test").Key;
model.Response = "Resp 1";
model.Treatment = "Treat2";
model.NormalProbabilityPlotSelected = true;
model.ResidualsVsPredictedPlotSelected = true;
//Act
HttpResponseMessage response = await client.PostAsync("Analyses/UnpairedTTestAnalysis", new FormUrlEncodedContent(model.ToKeyValue()));
IEnumerable <string> errors = await Helpers.ExtractErrors(response);
//Assert
Assert.Contains("The Treatment factor (Treat2) contains missing data where there are observations present in the Response. Please check the input data and make sure the data was entered correctly.", errors);
Helpers.SaveOutput("UnpairedTTestAnalysis", testName, errors);
}
public async Task <IActionResult> UnpairedTTestAnalysis(UnpairedTTestAnalysisModel model, bool ignoreWarnings)
{
return(await RunAnalysis(model, ignoreWarnings));
}
public UnpairedTTestAnalysisValidator(UnpairedTTestAnalysisModel uptt)
: base(uptt.DataTable)
{
upttVariables = uptt;
}
