public void MultipleTests_Examples()
{
// Let's say we would like to compute the definite
// integral of the function f(x) = cos(x) from -1 to 1
Func <double, double> f = (x) => Math.Cos(x);
double a = -1;
double b = +1;
double trapez = TrapezoidalRule.Integrate(f, a, b, steps: 1000); // 1.6829414
double romberg = RombergMethod.Integrate(f, a, b); // 1.6829419
double nagk = NonAdaptiveGaussKronrod.Integrate(f, a, b); // 1.6829419
// Now let's say we would like to compute an improper integral
// from -infinite to +infinite, such as the integral of a Gaussian
// PDF (which should evaluate to 1):
Func <double, double> g = (x) => (1 / Math.Sqrt(2 * Math.PI)) * Math.Exp(-(x * x) / 2);
double iagk = InfiniteAdaptiveGaussKronrod.Integrate(g,
Double.NegativeInfinity, Double.PositiveInfinity); // Output should be 0.99999...
Assert.AreEqual(1.6829414086350976, trapez); // 1.6829414086350976
Assert.AreEqual(1.682941969615797, romberg); // 1.682941969615797
Assert.AreEqual(1.6829419595739716, nagk); // 1.6829419595739716
Assert.AreEqual(0.99999999999999978, iagk); // 0.99999999999999978
}
public void test2()
{
string path = @"C:\Users\Rui Zhang\Downloads\Serum_1_C18_03292019_Ali.raw";
ISpectrumReader reader = new ThermoRawSpectrumReader();
reader.Init(path);
RidgeLineFinder coeffMatrix = new RidgeLineFinder(1.0, 2, 1, 2);
IProcess processer = new PeakPickingCWT(coeffMatrix);
//for (int i = reader.GetFirstScan(); i < reader.GetLastScan(); i++)
int i = 347;
{
if (reader.GetMSnOrder(i) < 2)
{
ISpectrum spectrum = reader.GetSpectrum(i);
List <IPeak> peaks = spectrum.GetPeaks();
spectrum = processer.Process(spectrum);
IAreaCalculator calculator = new TrapezoidalRule();
IBounder bounder = new PerpendicularDrop();
PeakAreaCalculator areaCalculator = new PeakAreaCalculator(calculator, bounder);
areaCalculator.Init(peaks);
foreach (IPeak peak in spectrum.GetPeaks())
{
Console.WriteLine(peak.GetMZ() + " : " + areaCalculator.Area(peak).ToString());
}
}
}
}
private void Defuzzificate()
{
Func <double, double> numeratorSubFunction = (x) => x *JointFunctions.GetValue(x);
Func <double, double> denumeratorSubFunction = (x) => JointFunctions.GetValue(x);
double max = JointFunctions.MaxInputValue;
double min = JointFunctions.MinInputValue;
// Integrate!
double numerator = TrapezoidalRule.Integrate(numeratorSubFunction, min, max, steps: 100);
double denumerator = TrapezoidalRule.Integrate(denumeratorSubFunction, min, max, steps: 100);
Output = numerator / denumerator;
}
public void test1()
{
double[] mz = new double[] { 1, 2, 3, 4, 5 };
double[] intensity = new double[] { 1, 2, 3, 4, 1 };
List <IPeak> peaks = new List <IPeak>();
for (int i = 0; i < mz.Length; i++)
{
peaks.Add(new GeneralPeak(mz[i], intensity[i]));
}
IAreaCalculator calculator = new TrapezoidalRule();
IBounder bounder = new PerpendicularDrop();
PeakAreaCalculator areaCalculator = new PeakAreaCalculator(calculator, bounder);
areaCalculator.Init(peaks);
Console.WriteLine(areaCalculator.Area(new GeneralPeak(4.0, 1)));
}
public void TrapezoidalTest()
{
double actual;
actual = TrapezoidalRule.Integrate(function1, 0, 2, 1);
Assert.AreEqual(4.0486368718741526, actual, 1e-15);
Assert.IsFalse(Double.IsNaN(actual));
actual = TrapezoidalRule.Integrate(function1, 0, 2, 2);
Assert.AreEqual(3.6081715993899337, actual, 1e-15);
Assert.IsFalse(Double.IsNaN(actual));
actual = TrapezoidalRule.Integrate(function1, 0, 2, 4);
Assert.AreEqual(3.4971047822027077, actual, 1e-15);
Assert.IsFalse(Double.IsNaN(actual));
actual = TrapezoidalRule.Integrate(function1, 0, 2, 8);
Assert.AreEqual(3.4692784302833672, actual, 1e-15);
Assert.IsFalse(Double.IsNaN(actual));
actual = TrapezoidalRule.Integrate(function1, 0, 2, 16);
Assert.AreEqual(3.4623181105467689, actual, 1e-15);
Assert.IsFalse(Double.IsNaN(actual));
}
