/// <summary>
/// Set TarColEnum
/// </summary>
/// <param name="tarColEnum"></param>
public AssayAttributePosition(TarColEnum tarColEnum)
{
TarColEnum = tarColEnum;
}
/// <summary>
/// Get a primitive value from the in-memory Target Assay Results cache
/// </summary>
/// <param name="dri"></param>
/// <param name="rfld"></param>
/// <returns></returns>
public object GetPrimitiveValueFromTarCache(
int dri,
ResultsField rfld)
{
AssayAttributes taa = null;
BinaryReader br;
long streamLength;
string s;
int rowNum;
GetPrimitiveValueFromTarCacheCalls++;
ushort aid = AssayId[dri];
if (aid == LastAid)
{
taa = LastTaa;
}
else if (TargetAssayDict.AssayIdMap.ContainsKey(aid)) // link to associated target-assay attributes
{
LastAid = aid;
LastTaa = taa = TargetAssayDict.AssayIdMap[aid];
}
int voi = rfld.VoPosition;
if (voi < 0 || voi >= TarFieldPositionMap.VoiToTarColEnum.Length)
{
return(null); // not in range
}
TarColEnum tarCol = TarFieldPositionMap.VoiToTarColEnum[voi];
switch (tarCol)
{
// Assay Attributes - Get from TargetAssayDictionary
case TarColEnum.Id:
if (taa != null)
{
return(taa.Id);
}
else
{
return(null);
}
case TarColEnum.TargetSymbol:
if (taa != null)
{
return(taa.GeneSymbol);
}
else
{
return(null);
}
case TarColEnum.TargetId:
if (taa != null)
{
return(taa.GeneId);
}
else
{
return(null);
}
case TarColEnum.TargetDescription:
if (taa != null)
{
return(taa.GeneDescription);
}
else
{
return(null);
}
case TarColEnum.GeneFamily:
if (taa != null)
{
return(taa.GeneFamily);
}
else
{
return(null);
}
case TarColEnum.GeneFamilyTargetSymbol: // catenation of target family & gene symbol
if (taa != null)
{
return(taa.GeneFamilyTargetSymbol);
}
else
{
return(null);
}
case TarColEnum.AssayDatabase:
if (taa != null)
{
return(taa.AssayDatabase);
}
else
{
return(null);
}
case TarColEnum.AssayMetaTableName: // name of the metatable containing the data
if (taa != null)
{
return(taa.AssayMetaTableName);
}
else
{
return(null);
}
case TarColEnum.AssayName:
if (taa != null)
{
return(taa.AssayName);
}
else
{
return(null);
}
case TarColEnum.AssayNameSx: // contains name & link when deserialized from StringEx
if (taa != null)
{
return(taa.AssayName); // todo: add link
}
else
{
return(null);
}
case TarColEnum.AssayDesc:
if (taa != null)
{
return(taa.AssayDesc);
}
else
{
return(null);
}
case TarColEnum.AssayLocation:
if (taa != null)
{
return(taa.AssaySource);
}
else
{
return(null);
}
case TarColEnum.AssayType:
if (taa != null)
{
return(taa.AssayType);
}
else
{
return(null);
}
case TarColEnum.AssayMode:
if (taa != null)
{
return(taa.AssayMode);
}
else
{
return(null);
}
case TarColEnum.AssayStatus:
if (taa != null)
{
return(taa.AssayStatus);
}
else
{
return(null);
}
case TarColEnum.AssayGeneCount:
if (taa != null)
{
return(taa.GeneCount);
}
else
{
return(null);
}
case TarColEnum.ResultName: // result label
if (taa != null)
{
return(taa.ResultName);
}
else
{
return(null);
}
case TarColEnum.ResultTypeIdTxt: // text form of result type code
if (taa != null)
{
return(taa.ResultTypeIdTxt);
}
else
{
return(null);
}
case TarColEnum.ResultTypeId2: // numeric form of result type code:
if (taa != null)
{
return(taa.ResultTypeId2);
}
else
{
return(null);
}
case TarColEnum.ResultTypeConcType: // SP or CRC
if (taa != null)
{
return(taa.ResultTypeConcType);
}
else
{
return(null);
}
case TarColEnum.TopLevelResult: // Y if this is a CRC or if a SP with no associated CRC
if (taa != null)
{
return(taa.TopLevelResult);
}
else
{
return(null);
}
case TarColEnum.Remapped:
if (taa != null)
{
return(taa.Remapped);
}
else
{
return(null);
}
case TarColEnum.Multiplexed:
if (taa != null)
{
return(taa.Multiplexed);
}
else
{
return(null);
}
case TarColEnum.Reviewed:
if (taa != null)
{
return(taa.Reviewed);
}
else
{
return(null);
}
case TarColEnum.ProfilingAssay:
if (taa != null)
{
return(taa.ProfilingAssay);
}
else
{
return(null);
}
case TarColEnum.CompoundsAssayed:
if (taa != null)
{
return(taa.CompoundsAssayed);
}
else
{
return(null);
}
case TarColEnum.ResultCount:
if (taa != null)
{
return(taa.ResultCount);
}
else
{
return(null);
}
case TarColEnum.AssayUpdateDate: // date of most recent assay result
if (taa != null)
{
return(taa.AssayUpdateDate);
}
else
{
return(null);
}
case TarColEnum.AssociationSource: // ASSAY2EG
if (taa != null)
{
return(taa.AssociationSource);
}
else
{
return(null);
}
case TarColEnum.AssociationConflict: // conflicting source & it's assignment
if (taa != null)
{
return(taa.AssociationConflict);
}
else
{
return(null);
}
case TarColEnum.TargetMapX:
if (taa != null)
{
return(taa.TargetMapX);
}
else
{
return(null);
}
case TarColEnum.TargetMapY:
if (taa != null)
{
return(taa.TargetMapY);
}
else
{
return(null);
}
case TarColEnum.TargetMapZ:
if (taa != null)
{
return(taa.TargetMapZ);
}
else
{
return(null);
}
// Results - Get from in-memory arrays, one per table column
case TarColEnum.CompoundId:
if (CompoundId == null)
{
CompoundId = ReadIntArray("CompoundId.bin");
}
return(CompoundId[dri]);
case TarColEnum.AssayId2: // numeric form of assay/table identifier
return((int)AssayId[dri]); // should already have data AssayId array
case TarColEnum.AssayIdTxt: // text form of assay/table identifier
return(AssayId.ToString());
//case TarColEnum.ResultTypeIdTxt: // text form of result type code
// if (ResultTypeId == null)
// ResultTypeId = ReadUShortArray("ResultTypeId.bin");
// return ResultTypeId[dri].ToString(); // get from results data array
//case TarColEnum.ResultTypeIdNbr: // numeric form of result type identifier
// if (ResultTypeId == null)
// ResultTypeId = ReadUShortArray("ResultTypeId.bin");
// return (int)ResultTypeId[dri]; // get from results data array
case TarColEnum.ActivityBin:
if (ActivityBin == null)
{
ActivityBin = ReadByteArray("ActivityBin.bin");
}
return((int)ActivityBin[dri]);
case TarColEnum.ResultValue: // just return numeric value
if (ResultNumericValue == null)
{
ResultNumericValue = ReadSingleArray("ResultNumericValue.bin");
}
return(ResultNumericValue[dri]);
case TarColEnum.ResultQualifier:
if (ResultQualifier == null)
{
ResultQualifier = ReadByteArray("ResultQualifier.bin");
}
if (ResultQualifier[dri] != ' ')
{
return(ResultQualifier[dri].ToString());
}
else
{
return("");
}
case TarColEnum.ResultNumericValue:
if (ResultNumericValue == null)
{
ResultNumericValue = ReadSingleArray("ResultNumericValue.bin");
}
return(ResultNumericValue[dri]);
case TarColEnum.ResultTextValue:
if (ResultTextValue == null)
{
ResultTextValue = new Dictionary <int, string>();
br = OpenBinaryReader("ResultTextValue.bin");
streamLength = br.BaseStream.Length;
while (true)
{
if (br.BaseStream.Position >= streamLength - 1)
{
break;
}
rowNum = br.ReadInt32();
s = br.ReadString();
ResultTextValue[rowNum] = s;
}
br.Close();
}
if (ResultTextValue.ContainsKey(dri))
{
return(ResultTextValue[dri]);
}
else
{
return("");
}
case TarColEnum.NValue:
return(0);
case TarColEnum.NValueTested:
return(0);
case TarColEnum.StdDev:
return(0);
case TarColEnum.Units:
if (Units == null)
{
Units = new Dictionary <int, string>();
br = OpenBinaryReader("Units.bin");
streamLength = br.BaseStream.Length;
while (true)
{
if (br.BaseStream.Position >= streamLength - 1)
{
break;
}
rowNum = br.ReadInt32();
s = br.ReadString();
Units[rowNum] = s;
}
br.Close();
}
if (ResultTextValue.ContainsKey(dri))
{
return(ResultTextValue[dri]);
}
else
{
return("");
}
case TarColEnum.Conc:
if (Conc == null)
{
ReadConcData();
}
if (Conc.ContainsKey(dri))
{
return(Conc[dri]);
}
else
{
return(0);
}
case TarColEnum.ConcUnits:
if (ConcUnits == null)
{
ReadConcData();
}
if (ConcUnits.ContainsKey(dri))
{
return(ConcUnits[dri]);
}
else
{
return("");
}
case TarColEnum.RunDate:
if (RunDate == null)
{
RunDate = ReadUShortArray("RunDate.bin");
}
ushort days = RunDate[dri];
DateTime dt = BaseDate.AddDays(days);
return(dt);
case TarColEnum.ResultDetail:
return("");
default:
throw new Exception("Unexpected TarColEnum: " + tarCol);
}
}