public void build_for_large_binary()
{
var sw = new Stopwatch();
sw.Restart();
var data = new byte[32768];
var rnd = new Random();
rnd.NextBytes(data);
sw.Stop();
Console.WriteLine($"Data generation took {sw.Elapsed} for 32KB");
sw.Restart();
var subject = new SuffixTree();
subject.Extend(data);
subject.Terminate();
sw.Stop();
Console.WriteLine($"Building suffix tree took {sw.Elapsed}");
sw.Restart();
var positions = subject.FindAll(new[] { (byte)'x' }).OrderBy(n => n).ToList();
var result = string.Join(",", positions);
sw.Stop();
Console.WriteLine($"Querying suffix tree took {sw.Elapsed}");
Console.WriteLine($"\r\n'x' found in these {positions.Count} positions: {result}");
}
public void query_for_all_positions()
{
var subject = new SuffixTree();
subject.Extend(SampleText);
subject.Terminate(); // required to catch the last one
//var desc = subject.TreeDescription();
//Console.WriteLine(desc);
var positions = subject.FindAll("wood").ToList().OrderBy(n => n);
var result = string.Join(",", positions);
Assert.That(result, Is.EqualTo("9,22,44,67"), "positions of 'wood'");
positions = subject.FindAll("chuck").ToList().OrderBy(n => n);
result = string.Join(",", positions);
Assert.That(result, Is.EqualTo("27,33,49,61"), "positions of 'chuck'");
}
public void query_for_all_positions_simple()
{
var subject = new SuffixTree();
subject.Extend("abcabxabcd$");
subject.Terminate(); // required to catch the last one
//var desc = subject.TreeDescription();
//Console.WriteLine(desc);
var positions = subject.FindAll("abc").ToList().OrderBy(n => n);
var result = string.Join(",", positions);
Assert.That(result, Is.EqualTo("0,6"));
positions = subject.FindAll("b").ToList().OrderBy(n => n);
result = string.Join(",", positions);
Assert.That(result, Is.EqualTo("1,4,7"));
}
