public void ScaffoldTest()
{
var chemistry = new ChemistryFileData();
chemistry.OriginalChemName = "XYZ";
var esdatModel = new ESDATModel();
var sample = new SampleFileData();
var mockDb = new Mock <IDbContext>();
var mockDbContext = mockDb.Object;
var duplicateChecker = new ODM2DuplicateChecker(mockDbContext);
var defaultValueProvider = new StaticWQDefaultValueProvider();
var wayToHandleNewData = WayToHandleNewData.ThrowExceptionForNewData;
var results = new List <IResult>();
var mapper = new ChemistryVariableMapper(duplicateChecker, defaultValueProvider, wayToHandleNewData, results);
var variable = mapper.Draft(esdatModel, chemistry);
Assert.AreEqual(defaultValueProvider.DefaultVariableTypeCVChemistry, variable.VariableTypeCV);
Assert.AreEqual(chemistry.ChemCode, variable.VariableCode);
// This is temporarily hard-coded
Assert.AreEqual("1,1,1-Trichloroethane", variable.VariableNameCV);
Assert.AreEqual(chemistry.OriginalChemName, variable.VariableDefinition);
Assert.AreEqual(defaultValueProvider.DefaultVariableSpeciationCV, variable.SpeciationCV);
Assert.AreEqual(defaultValueProvider.DefaultVariableNoDataValue, variable.NoDataValue);
}
public void ScaffoldTest()
{
var esdatModel = new ESDATModel();
var mockDb = new Mock <IDbContext>();
var mockDbContext = mockDb.Object;
var duplicateChecker = new ODM2DuplicateChecker(mockDbContext);
var defaultValueProvider = new StaticWQDefaultValueProvider();
var wayToHandleNewData = WayToHandleNewData.ThrowExceptionForNewData;
var results = new List <IResult>();
var mapper = new RelatedActionMapper(duplicateChecker, defaultValueProvider, wayToHandleNewData, results);
var action1 = new Core.Action();
action1.ActionID = 101;
var action2 = new Core.Action();
action2.ActionID = 102;
mapper.SetRelationship(action1, "relationshipTypeCV", action2);
var relatedAction = mapper.Draft(esdatModel);
Assert.AreEqual(action1.ActionID, relatedAction.ActionID);
Assert.AreEqual("relationshipTypeCV", relatedAction.RelationshipTypeCV);
Assert.AreEqual(action2.ActionID, relatedAction.RelatedActionID);
Assert.AreEqual(action1, relatedAction.Action);
Assert.AreEqual(action2, relatedAction.Action1);
}
public void Scaffold()
{
var esdatModel = new ESDATModel();
var labName = "XYZ Labs";
var sample = new SampleFileData();
sample.LabName = labName;
var chemistry = new ChemistryFileData();
var mockDb = new Mock <IDbContext>();
var mockDbContext = mockDb.Object;
var duplicateChecker = new ODM2DuplicateChecker(mockDbContext);
var defaultValueProvider = new StaticWQDefaultValueProvider();
var wayToHandleNewData = WayToHandleNewData.ThrowExceptionForNewData;
var results = new List <IResult>();
var mapper = new SampleCollectionOrganizationMapper(duplicateChecker, defaultValueProvider, wayToHandleNewData, results);
var organization = mapper.Draft(esdatModel);
Assert.AreEqual(defaultValueProvider.OrganizationTypeCVSampleCollection, organization.OrganizationTypeCV);
Assert.AreEqual(mapper.GetOrganizationCode(defaultValueProvider.OrganizationNameSampleCollection), organization.OrganizationCode);
Assert.AreEqual(defaultValueProvider.OrganizationNameSampleCollection, organization.OrganizationName);
}
protected override IEnumerable <SampleFileData> ResolveCore(Hatfield.EnviroData.Core.Action source)
{
var defaultValueHelper = new StaticWQDefaultValueProvider();
defaultValueHelper.Init();
var versionHelper = new DataVersioningHelper(defaultValueHelper);
var latestVersion = versionHelper.GetLatestVersionActionData(source);
var featureActions = latestVersion.FeatureActions;
var result = new List <SampleFileData> {
};
foreach (var featureAction in featureActions)
{
var samplingActionResults = featureAction.Results;
if (samplingActionResults != null)
{
foreach (var samplingActionResult in samplingActionResults)
{
var sampleFileData = MapSampleFileData(featureAction.Action, samplingActionResult);
if (sampleFileData != null)
{
result.Add(sampleFileData);
}
}
}
}
return(result);
}
public void Scaffold()
{
var esdatModel = new ESDATModel();
var mockDb = new Mock <IDbContext>();
var mockDbContext = mockDb.Object;
var duplicateChecker = new ODM2DuplicateChecker(mockDbContext);
var defaultValueProvider = new StaticWQDefaultValueProvider();
var wayToHandleNewData = WayToHandleNewData.ThrowExceptionForNewData;
var results = new List <IResult>();
var mapper = new ProcessingLevelMapper(duplicateChecker, defaultValueProvider, wayToHandleNewData, results);
var processingLevel = mapper.Draft(esdatModel);
Assert.AreEqual(defaultValueProvider.DefaultProcessingLevelCode, processingLevel.ProcessingLevelCode);
}
public void ScaffoldChemistryTest()
{
var esdatModel = new ESDATModel();
var mockDb = new Mock <IDbContext>();
var mockDbContext = mockDb.Object;
var duplicateChecker = new ODM2DuplicateChecker(mockDbContext);
var defaultValueProvider = new StaticWQDefaultValueProvider();
var wayToHandleNewData = WayToHandleNewData.ThrowExceptionForNewData;
var results = new List <IResult>();
var mapper = new DatasetsResultMapper(duplicateChecker, defaultValueProvider, wayToHandleNewData, results);
var datasetsResult = mapper.Draft(esdatModel);
Assert.AreEqual(0, datasetsResult.BridgeID);
Assert.AreEqual(0, datasetsResult.DatasetID);
Assert.AreEqual(0, datasetsResult.ResultID);
}
public void ScaffoldTest()
{
var esdatModel = new ESDATModel();
var mockDb = new Mock <IDbContext>();
var mockDbContext = mockDb.Object;
var duplicateChecker = new ODM2DuplicateChecker(mockDbContext);
var defaultValueProvider = new StaticWQDefaultValueProvider();
var wayToHandleNewData = WayToHandleNewData.ThrowExceptionForNewData;
var results = new List <IResult>();
var mapper = new SampleCollectionFeatureActionMapper(duplicateChecker, defaultValueProvider, wayToHandleNewData, results);
var featureAction = mapper.Draft(esdatModel);
Assert.AreEqual(0, featureAction.FeatureActionID);
Assert.AreEqual(0, featureAction.SamplingFeatureID);
Assert.AreEqual(0, featureAction.ActionID);
}
public void ScaffoldTest()
{
var esdatModel = new ESDATModel();
var mockDb = new Mock <IDbContext>();
var mockDbContext = mockDb.Object;
var duplicateChecker = new ODM2DuplicateChecker(mockDbContext);
var defaultValueProvider = new StaticWQDefaultValueProvider();
var wayToHandleNewData = WayToHandleNewData.ThrowExceptionForNewData;
var results = new List <IResult>();
var mapper = new SampleCollectionSamplingFeatureMapper(duplicateChecker, defaultValueProvider, wayToHandleNewData, results);
var samplingFeature = mapper.Draft(esdatModel);
Assert.AreEqual(defaultValueProvider.DefaultSamplingFeatureTypeCVSampleCollection, samplingFeature.SamplingFeatureTypeCV);
Assert.AreEqual(defaultValueProvider.DefaultSamplingFeatureCodeSampleCollection, samplingFeature.SamplingFeatureCode);
Assert.AreEqual(new Guid(), samplingFeature.SamplingFeatureUUID);
}
public void ScaffoldTest()
{
var esdatModel = new ESDATModel();
var mockDb = new Mock <IDbContext>();
var mockDbContext = mockDb.Object;
var duplicateChecker = new ODM2DuplicateChecker(mockDbContext);
var defaultValueProvider = new StaticWQDefaultValueProvider();
var wayToHandleNewData = WayToHandleNewData.ThrowExceptionForNewData;
var results = new List <IResult>();
var mapper = new SampleCollectionUnitMapper(duplicateChecker, defaultValueProvider, wayToHandleNewData, results);
var unit = mapper.Draft(esdatModel);
Assert.AreEqual(defaultValueProvider.DefaultUnitsTypeCVSampleCollection, unit.UnitsTypeCV);
Assert.AreEqual(mapper.AbbereviateUnit(defaultValueProvider.DefaultUnitsTypeCVSampleCollection), unit.UnitsAbbreviation);
Assert.AreEqual(defaultValueProvider.DefaultUnitsTypeCVSampleCollection, unit.UnitsName);
}
public void ScaffoldTest()
{
var esdatModel = new ESDATModel();
var mockDb = new Mock <IDbContext>();
var mockDbContext = mockDb.Object;
var duplicateChecker = new ODM2DuplicateChecker(mockDbContext);
var defaultValueProvider = new StaticWQDefaultValueProvider();
var wayToHandleNewData = WayToHandleNewData.ThrowExceptionForNewData;
var results = new List <IResult>();
var mapper = new SampleCollectionMethodMapper(duplicateChecker, defaultValueProvider, wayToHandleNewData, results);
var method = mapper.Draft(esdatModel);
Assert.AreEqual(defaultValueProvider.DefaultMethodTypeCVSampleCollection, method.MethodTypeCV);
Assert.AreEqual(string.Empty, method.MethodCode);
Assert.AreEqual(defaultValueProvider.DefaultMethodTypeCVSampleCollection, method.MethodName);
}
public void Scaffold()
{
var esdatModel = new ESDATModel();
var mockDb = new Mock <IDbContext>();
var mockDbContext = mockDb.Object;
var duplicateChecker = new ODM2DuplicateChecker(mockDbContext);
var defaultValueProvider = new StaticWQDefaultValueProvider();
var wayToHandleNewData = WayToHandleNewData.ThrowExceptionForNewData;
var results = new List <IResult>();
var mapper = new PersonMapper(duplicateChecker, defaultValueProvider, wayToHandleNewData, results);
var affiliation = new Affiliation();
var person = mapper.Draft(esdatModel);
Assert.AreEqual(defaultValueProvider.DefaultPersonFirstName, person.PersonFirstName);
Assert.AreEqual(defaultValueProvider.DefaultPersonMiddleName, person.PersonMiddleName);
Assert.AreEqual(defaultValueProvider.DefaultPersonLastName, person.PersonLastName);
}
public void ScaffoldTest()
{
var esdatModel = new ESDATModel();
var mockDb = new Mock <IDbContext>();
var mockDbContext = mockDb.Object;
var duplicateChecker = new ODM2DuplicateChecker(mockDbContext);
var defaultValueProvider = new StaticWQDefaultValueProvider();
var wayToHandleNewData = WayToHandleNewData.ThrowExceptionForNewData;
var results = new List <IResult>();
var mapper = new DatasetMapper(duplicateChecker, defaultValueProvider, wayToHandleNewData, results);
var datasetsResult = new DatasetsResult();
var dataSet = mapper.Draft(esdatModel);
Assert.AreEqual(defaultValueProvider.DefaultDatasetTypeCV, dataSet.DatasetTypeCV);
Assert.AreEqual(esdatModel.LabRequestId.ToString(), dataSet.DatasetCode);
Assert.AreEqual(String.Format("{0}: {1} ({2})", esdatModel.LabName, esdatModel.LabRequestId.ToString(), esdatModel.DateReported), dataSet.DatasetTitle);
Assert.AreEqual(string.Empty, dataSet.DatasetAbstract);
}
public void ScaffoldTest()
{
var chemistry = new ChemistryFileData();
var esdatModel = new ESDATModel();
var sample = new SampleFileData();
var mockDb = new Mock <IDbContext>();
var mockDbContext = mockDb.Object;
var duplicateChecker = new ODM2DuplicateChecker(mockDbContext);
var defaultValueProvider = new StaticWQDefaultValueProvider();
var wayToHandleNewData = WayToHandleNewData.ThrowExceptionForNewData;
var results = new List <IResult>();
var mapper = new ChemistryMeasurementResultMapper(duplicateChecker, defaultValueProvider, wayToHandleNewData, results);
var measurementResult = mapper.Draft(esdatModel, chemistry);
Assert.AreEqual(defaultValueProvider.MeasurementResultCensorCodeCVChemistry, measurementResult.CensorCodeCV);
Assert.AreEqual(defaultValueProvider.MeasurementResultQualityCodeCVChemistry, measurementResult.QualityCodeCV);
Assert.AreEqual(defaultValueProvider.MeasurementResultAggregationStatisticCVChemistry, measurementResult.AggregationStatisticCV);
}
public void ScaffoldTest()
{
var esdatModel = new ESDATModel();
var mockDb = new Mock <IDbContext>();
var mockDbContext = mockDb.Object;
var duplicateChecker = new ODM2DuplicateChecker(mockDbContext);
var defaultValueProvider = new StaticWQDefaultValueProvider();
var wayToHandleNewData = WayToHandleNewData.ThrowExceptionForNewData;
var results = new List <IResult>();
var mapper = new ActionByMapper(duplicateChecker, defaultValueProvider, wayToHandleNewData, results);
var action = new Core.Action();
action.ActionID = 101;
var actionBy = mapper.Draft(esdatModel);
Assert.AreEqual(true, actionBy.IsActionLead);
}
//Commment this out so auto-build would not run this unit test
//[Test]
public void DBTest()
{
var dbContext = new ODM2Entities();
var duplicateChecker = new ODM2DuplicateChecker(dbContext);
var esdatModel = extractEsdatModel();
var WQDefaultValueProvider = new StaticWQDefaultValueProvider();
var wayToHandleNewData = WayToHandleNewData.CreateInstanceForNewData;
var results = new List <IResult>();
var sampleCollectionFactory = new ESDATSampleCollectionMapperFactory(duplicateChecker, WQDefaultValueProvider, wayToHandleNewData, results);
var chemistryFactory = new ESDATChemistryMapperFactory(duplicateChecker, WQDefaultValueProvider, wayToHandleNewData, results);
var mapper = new SampleCollectionActionMapper(duplicateChecker, sampleCollectionFactory, WQDefaultValueProvider, chemistryFactory, wayToHandleNewData, results);
var converter = new ESDATConverter(mapper);
var action = converter.Map(esdatModel);
dbContext.Add(action);
dbContext.SaveChanges();
}
public void ScaffoldTest()
{
var esdatModel = new ESDATModel();
esdatModel.DateReported = DateTime.Now;
var mockDb = new Mock <IDbContext>();
var mockDbContext = mockDb.Object;
var duplicateChecker = new ODM2DuplicateChecker(mockDbContext);
var defaultValueProvider = new StaticWQDefaultValueProvider();
var wayToHandleNewData = WayToHandleNewData.ThrowExceptionForNewData;
var results = new List <IResult>();
var SampleCollectionFactory = new ESDATSampleCollectionMapperFactory(duplicateChecker, defaultValueProvider, wayToHandleNewData, results);
var chemistryFactory = new ESDATChemistryMapperFactory(duplicateChecker, defaultValueProvider, wayToHandleNewData, results);
var mapper = new SampleCollectionActionMapper(duplicateChecker, SampleCollectionFactory, defaultValueProvider, chemistryFactory, wayToHandleNewData, results);
var action = mapper.Draft(esdatModel);
Assert.AreEqual(defaultValueProvider.ActionTypeCVSampleCollection, action.ActionTypeCV);
Assert.AreEqual(esdatModel.DateReported, action.BeginDateTime);
}
public void ScaffoldTest()
{
var chemistry = new ChemistryFileData();
var esdatModel = new ESDATModel();
var sample = new SampleFileData();
var mockDb = new Mock <IDbContext>();
var mockDbContext = mockDb.Object;
var duplicateChecker = new ODM2DuplicateChecker(mockDbContext);
var defaultValueProvider = new StaticWQDefaultValueProvider();
var wayToHandleNewData = WayToHandleNewData.ThrowExceptionForNewData;
var results = new List <IResult>();
var mapper = new ChemistryResultMapper(duplicateChecker, defaultValueProvider, wayToHandleNewData, results);
var result = mapper.Draft(esdatModel, chemistry);
Assert.AreEqual(defaultValueProvider.ResultTypeCVChemistry, result.ResultTypeCV);
Assert.AreEqual(chemistry.AnalysedDate, result.ResultDateTime);
Assert.AreEqual(defaultValueProvider.ResultSampledMediumCVChemistry, result.SampledMediumCV);
Assert.AreEqual(1, result.ValueCount);
}
public void ScaffoldTest()
{
var chemistry = new ChemistryFileData();
chemistry.Result = 101;
chemistry.AnalysedDate = DateTime.Now;
var esdatModel = new ESDATModel();
var sample = new SampleFileData();
var mockDb = new Mock <IDbContext>();
var mockDbContext = mockDb.Object;
var duplicateChecker = new ODM2DuplicateChecker(mockDbContext);
var defaultValueProvider = new StaticWQDefaultValueProvider();
var wayToHandleNewData = WayToHandleNewData.ThrowExceptionForNewData;
var results = new List <IResult>();
var mapper = new ChemistryMeasurementResultValueMapper(duplicateChecker, defaultValueProvider, wayToHandleNewData, results);
var measurementResultValue = mapper.Draft(esdatModel, chemistry);
Assert.AreEqual(chemistry.Result, measurementResultValue.DataValue);
Assert.AreEqual(chemistry.AnalysedDate, measurementResultValue.ValueDateTime);
}
public void ScaffoldTest()
{
var chemistry = new ChemistryFileData();
chemistry.AnalysedDate = DateTime.Now;
var esdatModel = new ESDATModel();
var mockDb = new Mock <IDbContext>();
var mockDbContext = mockDb.Object;
var duplicateChecker = new ODM2DuplicateChecker(mockDbContext);
var defaultValueProvider = new StaticWQDefaultValueProvider();
var wayToHandleNewData = WayToHandleNewData.ThrowExceptionForNewData;
var results = new List <IResult>();
var factory = new ESDATChemistryMapperFactory(duplicateChecker, defaultValueProvider, wayToHandleNewData, results);
var mapper = new ChemistryActionMapper(duplicateChecker, factory, defaultValueProvider, wayToHandleNewData, results);
var action = mapper.Draft(esdatModel, chemistry);
Assert.AreEqual(defaultValueProvider.ActionTypeCVChemistry, action.ActionTypeCV);
Assert.AreEqual(chemistry.ExtractionDate, action.BeginDateTime);
Assert.AreEqual(chemistry.AnalysedDate, action.EndDateTime);
}
public void ScaffoldTest()
{
var esdatModel = new ESDATModel();
esdatModel.DateReported = DateTime.Now;
var mockDb = new Mock <IDbContext>();
var mockDbContext = mockDb.Object;
var duplicateChecker = new ODM2DuplicateChecker(mockDbContext);
var defaultValueProvider = new StaticWQDefaultValueProvider();
var wayToHandleNewData = WayToHandleNewData.ThrowExceptionForNewData;
var results = new List <IResult>();
var mapper = new SampleCollectionVariableMapper(duplicateChecker, defaultValueProvider, wayToHandleNewData, results);
var variable = mapper.Draft(esdatModel);
Assert.AreEqual(defaultValueProvider.DefaultVariableTypeCVSampleCollection, variable.VariableTypeCV);
Assert.AreEqual(defaultValueProvider.DefaultVariableCode, variable.VariableCode);
Assert.AreEqual(defaultValueProvider.DefaultVariableNameCV, variable.VariableNameCV);
Assert.AreEqual(defaultValueProvider.DefaultVariableSpeciationCV, variable.SpeciationCV);
Assert.AreEqual(defaultValueProvider.DefaultVariableNoDataValue, variable.NoDataValue);
}
//Commment this out so auto-build would not run this unit test
//[Test]
//[TestCase(WayToHandleNewData.CreateInstanceForNewData)]
//[TestCase(WayToHandleNewData.WarningForNewData)]
public void ResultsTest(WayToHandleNewData wayToHandleNewData)
{
var dbContext = new Mock <IDbContext>().Object;
var duplicateChecker = new ODM2DuplicateChecker(dbContext);
var esdatModel = extractEsdatModel();
var WQDefaultValueProvider = new StaticWQDefaultValueProvider();
var results = new List <IResult>();
var sampleCollectionFactory = new ESDATSampleCollectionMapperFactory(duplicateChecker, WQDefaultValueProvider, wayToHandleNewData, results);
var chemistryFactory = new ESDATChemistryMapperFactory(duplicateChecker, WQDefaultValueProvider, wayToHandleNewData, results);
var mapper = new SampleCollectionActionMapper(duplicateChecker, sampleCollectionFactory, WQDefaultValueProvider, chemistryFactory, wayToHandleNewData, results);
var converter = new ESDATConverter(mapper);
var resultsList = converter.Convert(esdatModel);
var errorCount = 0;
var warningCount = 0;
foreach (IResult result in resultsList)
{
Console.WriteLine(result.Level + ": " + result.Message);
if (result.Level.Equals(ResultLevel.ERROR) || result.Level.Equals(ResultLevel.FATAL))
{
errorCount++;
}
else if (result.Level.Equals(ResultLevel.WARN))
{
warningCount++;
}
}
Console.WriteLine(String.Format("{0} error(s), and {1} warning(s) found.", errorCount, warningCount));
Assert.AreEqual(0, errorCount, String.Format("{0} error(s) found.", errorCount));
Assert.AreEqual(0, warningCount, String.Format("{0} warning(s) found", warningCount));
}
