public void test_Reaction_parent_NULL() { SBMLDocument d = new SBMLDocument(); Model m = d.createModel(); Reaction c = m.createReaction(); SpeciesReference sr = c.createReactant(); KineticLaw kl = c.createKineticLaw(); assertTrue(c.getAncestorOfType(libsbml.SBML_MODEL) == m); assertEquals(c.getSBMLDocument(), d); assertTrue(sr.getAncestorOfType(libsbml.SBML_REACTION) == c); assertTrue(kl.getAncestorOfType(libsbml.SBML_REACTION) == c); Reaction c1 = c.clone(); d = null; assertTrue(c1.getAncestorOfType(libsbml.SBML_MODEL) == null); assertTrue(c1.getParentSBMLObject() == null); assertEquals(c1.getSBMLDocument(), null); SpeciesReference sr1 = c1.getReactant(0); assertTrue(sr1.getAncestorOfType(libsbml.SBML_MODEL) == null); assertTrue(sr1.getAncestorOfType(libsbml.SBML_REACTION) == c1); assertEquals(sr1.getSBMLDocument(), null); assertTrue(c1.getKineticLaw().getAncestorOfType(libsbml.SBML_MODEL) == null); assertTrue(c1.getKineticLaw().getAncestorOfType(libsbml.SBML_REACTION) == c1); assertEquals(c1.getKineticLaw().getSBMLDocument(), null); c1 = null; }
public void test_SpeciesReference_Reactant_ancestor_add() { SpeciesReference sr = new SpeciesReference(2, 4); Reaction r = new Reaction(2, 4); sr.setSpecies("s"); r.addReactant(sr); sr = null; ListOf lo = r.getListOfReactants(); SpeciesReference obj = r.getReactant(0); assertTrue(obj.getAncestorOfType(libsbml.SBML_REACTION) == r); assertTrue(obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo); assertTrue(obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null); assertTrue(obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == null); }
public void test_SpeciesReference_Reactant_ancestor_create() { Reaction r = new Reaction(2, 4); SpeciesReference sr = r.createReactant(); ListOf lo = r.getListOfReactants(); assertTrue(sr.getAncestorOfType(libsbml.SBML_REACTION) == r); assertTrue(sr.getAncestorOfType(libsbml.SBML_LIST_OF) == lo); assertTrue(sr.getAncestorOfType(libsbml.SBML_DOCUMENT) == null); assertTrue(sr.getAncestorOfType(libsbml.SBML_COMPARTMENT) == null); SpeciesReference obj = r.getReactant(0); assertTrue(obj.getAncestorOfType(libsbml.SBML_REACTION) == r); assertTrue(obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo); assertTrue(obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null); assertTrue(obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == null); }
public void test_SpeciesReference_Product_ancestor_create_model() { Model m = new Model(2, 4); Reaction r = m.createReaction(); SpeciesReference sr = m.createProduct(); ListOf lo = r.getListOfProducts(); assertTrue(sr.getAncestorOfType(libsbml.SBML_REACTION) == r); assertTrue(sr.getAncestorOfType(libsbml.SBML_LIST_OF) == lo); assertTrue(sr.getAncestorOfType(libsbml.SBML_MODEL) == m); assertTrue(sr.getAncestorOfType(libsbml.SBML_DOCUMENT) == null); assertTrue(sr.getAncestorOfType(libsbml.SBML_COMPARTMENT) == null); SpeciesReference obj = r.getProduct(0); assertTrue(obj.getAncestorOfType(libsbml.SBML_REACTION) == r); assertTrue(obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo); assertTrue(obj.getAncestorOfType(libsbml.SBML_MODEL) == m); assertTrue(obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null); assertTrue(obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == null); }