public void Init()
{
Species.DatasetParser speciesParser = new Species.DatasetParser();
reader = OpenFile("Species.txt");
try {
speciesDataset = speciesParser.Parse(reader);
}
finally {
reader.Close();
}
parser = new ParametersParser(speciesDataset,
startTime,
endTime);
}
//---------------------------------------------------------------------
public static void Initialize(double[,] establishProbabilities,
SeedingAlgorithm seedingAlgorithm,
AddNewCohortMethod addNewCohort)
{
Reproduction.establishProbabilities = establishProbabilities;
seeding = new Seeding(seedingAlgorithm);
Reproduction.addNewCohort = addNewCohort;
cohorts = Model.GetSuccession<AgeCohort.ICohort>().Cohorts;
speciesDataset = Model.Species;
int speciesCount = speciesDataset.Count;
resprout = Model.Landscape.NewSiteVar<BitArray>();
serotiny = Model.Landscape.NewSiteVar<BitArray>();
foreach (ActiveSite site in Model.Landscape.ActiveSites) {
resprout[site] = new BitArray(speciesCount);
serotiny[site] = new BitArray(speciesCount);
}
}
//---------------------------------------------------------------------
public static void Initialize(double[,] establishProbabilities,
SeedingAlgorithm seedingAlgorithm,
AddNewCohortMethod addNewCohort)
{
Reproduction.establishProbabilities = establishProbabilities;
seeding = new Seeding(seedingAlgorithm);
Reproduction.addNewCohort = addNewCohort;
cohorts = Model.Core.SuccessionCohorts as AgeCohort.ILandscapeCohorts;
if (cohorts == null)
throw new ApplicationException("The succession plug-in's cohorts don't support age-cohort interface");
speciesDataset = Model.Core.Species;
int speciesCount = speciesDataset.Count;
resprout = Model.Core.Landscape.NewSiteVar<BitArray>();
serotiny = Model.Core.Landscape.NewSiteVar<BitArray>();
foreach (ActiveSite site in Model.Core.Landscape.ActiveSites) {
resprout[site] = new BitArray(speciesCount);
serotiny[site] = new BitArray(speciesCount);
}
}
//---------------------------------------------------------------------
static FormOfReproduction()
{
speciesDataset = Model.Core.Species;
}
//---------------------------------------------------------------------
public static void Initialize(double[,] establishProbabilities,
SeedingAlgorithm seedingAlgorithm,
Delegates.AddNewCohort addNewCohort)
{
Reproduction.establishProbabilities = establishProbabilities;
seeding = new Seeding(seedingAlgorithm);
Reproduction.addNewCohort = addNewCohort;
cohorts = Model.Core.SuccessionCohorts as AgeCohort.ILandscapeCohorts;
if (cohorts == null)
throw new ApplicationException("The succession plug-in's cohorts don't support age-cohort interface");
speciesDataset = Model.Core.Species;
int speciesCount = speciesDataset.Count;
resprout = Model.Core.Landscape.NewSiteVar<BitArray>();
serotiny = Model.Core.Landscape.NewSiteVar<BitArray>();
foreach (ActiveSite site in Model.Core.Landscape.ActiveSites) {
resprout[site] = new BitArray(speciesCount);
serotiny[site] = new BitArray(speciesCount);
}
planting = new Planting();
trySeeding = new BlockRowBuffer<bool>(Model.Core.Landscape);
hasSeeded = new BlockRowBuffer<BitArray>(Model.Core.Landscape);
for (int col = 1; col <= hasSeeded.Columns; col++) {
hasSeeded[col] = new BitArray(speciesCount);
}
}