//--------------------------------------------------------------------- public static void Initialize(double[,] establishProbabilities, SeedingAlgorithm seedingAlgorithm, Delegates.AddNewCohort addNewCohort) { Reproduction.establishProbabilities = establishProbabilities; seeding = new Seeding(seedingAlgorithm); Reproduction.addNewCohort = addNewCohort; cohorts = Model.Core.SuccessionCohorts as AgeCohort.ILandscapeCohorts; if (cohorts == null) { throw new ApplicationException("The succession plug-in's cohorts don't support age-cohort interface"); } speciesDataset = Model.Core.Species; int speciesCount = speciesDataset.Count; resprout = Model.Core.Landscape.NewSiteVar <BitArray>(); serotiny = Model.Core.Landscape.NewSiteVar <BitArray>(); foreach (ActiveSite site in Model.Core.Landscape.ActiveSites) { resprout[site] = new BitArray(speciesCount); serotiny[site] = new BitArray(speciesCount); } planting = new Planting(); trySeeding = new BlockRowBuffer <bool>(Model.Core.Landscape); hasSeeded = new BlockRowBuffer <BitArray>(Model.Core.Landscape); for (int col = 1; col <= hasSeeded.Columns; col++) { hasSeeded[col] = new BitArray(speciesCount); } }
//--------------------------------------------------------------------- public static void Initialize(double[,] establishProbabilities, SeedingAlgorithm seedingAlgorithm, AddNewCohortMethod addNewCohort) { Reproduction.establishProbabilities = establishProbabilities; seeding = new Seeding(seedingAlgorithm); Reproduction.addNewCohort = addNewCohort; cohorts = Model.Core.SuccessionCohorts as AgeCohort.ILandscapeCohorts; if (cohorts == null) { throw new ApplicationException("The succession plug-in's cohorts don't support age-cohort interface"); } speciesDataset = Model.Core.Species; int speciesCount = speciesDataset.Count; resprout = Model.Core.Landscape.NewSiteVar <BitArray>(); serotiny = Model.Core.Landscape.NewSiteVar <BitArray>(); foreach (ActiveSite site in Model.Core.Landscape.ActiveSites) { resprout[site] = new BitArray(speciesCount); serotiny[site] = new BitArray(speciesCount); } }
//--------------------------------------------------------------------- //public static void Initialize(double[,] establishProbabilities, public static void Initialize(SeedingAlgorithm seedingAlgorithm, Delegates.AddNewCohort addNewCohort) { // Reproduction.establishProbabilities = establishProbabilities; seeding = new Seeding(seedingAlgorithm); Reproduction.addNewCohort = addNewCohort; SiteVars.Cohorts = Model.Core.GetSiteVar <SiteCohorts>("Succession.Cohorts"); speciesDataset = Model.Core.Species; int speciesCount = speciesDataset.Count; resprout = Model.Core.Landscape.NewSiteVar <BitArray>(); serotiny = Model.Core.Landscape.NewSiteVar <BitArray>(); noEstablish = Model.Core.Landscape.NewSiteVar <bool>(); foreach (ActiveSite site in Model.Core.Landscape.ActiveSites) { resprout[site] = new BitArray(speciesCount); serotiny[site] = new BitArray(speciesCount); } noEstablish.ActiveSiteValues = false; planting = new Planting(); }
//--------------------------------------------------------------------- /// <summary> /// Initializes the instance and its associated site variables. /// </summary> protected void Initialize(ICore modelCore, SeedingAlgorithms seedAlg)//, //Reproduction.Delegates.AddNewCohort addNewCohort) { Model.Core = modelCore; SiteVars.Initialize(); Seeding.InitializeMaxSeedNeighborhood(); disturbedSites = new DisturbedSiteEnumerator(Model.Core.Landscape, SiteVars.Disturbed); SeedingAlgorithm algorithm = SeedingAlgorithmsUtil.GetAlgorithm(seedAlg, Timestep); Reproduction.Initialize(algorithm); }
//--------------------------------------------------------------------- public static void Initialize(SeedingAlgorithm seedingAlgorithm) { seeding = new Seeding(seedingAlgorithm); speciesDataset = Model.Core.Species; int speciesCount = speciesDataset.Count; resprout = Model.Core.Landscape.NewSiteVar <BitArray>(); serotiny = Model.Core.Landscape.NewSiteVar <BitArray>(); noEstablish = Model.Core.Landscape.NewSiteVar <bool>(); foreach (ActiveSite site in Model.Core.Landscape.ActiveSites) { resprout[site] = new BitArray(speciesCount); serotiny[site] = new BitArray(speciesCount); } noEstablish.ActiveSiteValues = false; planting = new Planting(); }
//--------------------------------------------------------------------- public static void Initialize(double[,] establishProbabilities, SeedingAlgorithm seedingAlgorithm, AddNewCohortMethod addNewCohort) { Reproduction.establishProbabilities = establishProbabilities; seeding = new Seeding(seedingAlgorithm); Reproduction.addNewCohort = addNewCohort; cohorts = Model.GetSuccession<AgeCohort.ICohort>().Cohorts; speciesDataset = Model.Species; int speciesCount = speciesDataset.Count; resprout = Model.Landscape.NewSiteVar<BitArray>(); serotiny = Model.Landscape.NewSiteVar<BitArray>(); foreach (ActiveSite site in Model.Landscape.ActiveSites) { resprout[site] = new BitArray(speciesCount); serotiny[site] = new BitArray(speciesCount); } }
//--------------------------------------------------------------------- public static void Initialize(double[,] establishProbabilities, SeedingAlgorithm seedingAlgorithm, AddNewCohortMethod addNewCohort) { Reproduction.establishProbabilities = establishProbabilities; seeding = new Seeding(seedingAlgorithm); Reproduction.addNewCohort = addNewCohort; cohorts = Model.Core.SuccessionCohorts as AgeCohort.ILandscapeCohorts; if (cohorts == null) throw new ApplicationException("The succession plug-in's cohorts don't support age-cohort interface"); speciesDataset = Model.Core.Species; int speciesCount = speciesDataset.Count; resprout = Model.Core.Landscape.NewSiteVar<BitArray>(); serotiny = Model.Core.Landscape.NewSiteVar<BitArray>(); foreach (ActiveSite site in Model.Core.Landscape.ActiveSites) { resprout[site] = new BitArray(speciesCount); serotiny[site] = new BitArray(speciesCount); } }
//--------------------------------------------------------------------- public Seeding(SeedingAlgorithm seedingAlgorithm) { this.seedingAlgorithm = seedingAlgorithm; this.cohorts = Model.GetSuccession <AgeCohort.ICohort>().Cohorts; }
//--------------------------------------------------------------------- public Seeding(SeedingAlgorithm seedingAlgorithm) { this.seedingAlgorithm = seedingAlgorithm; }
//--------------------------------------------------------------------- public static void Initialize(SeedingAlgorithm seedingAlgorithm) { seeding = new Seeding(seedingAlgorithm); speciesDataset = Model.Core.Species; int speciesCount = speciesDataset.Count; resprout = Model.Core.Landscape.NewSiteVar<BitArray>(); serotiny = Model.Core.Landscape.NewSiteVar<BitArray>(); noEstablish = Model.Core.Landscape.NewSiteVar<bool>(); foreach (ActiveSite site in Model.Core.Landscape.ActiveSites) { resprout[site] = new BitArray(speciesCount); serotiny[site] = new BitArray(speciesCount); } noEstablish.ActiveSiteValues = false; planting = new Planting(); }
//--------------------------------------------------------------------- public static void Initialize(double[,] establishProbabilities, SeedingAlgorithm seedingAlgorithm, Delegates.AddNewCohort addNewCohort) { Reproduction.establishProbabilities = establishProbabilities; seeding = new Seeding(seedingAlgorithm); Reproduction.addNewCohort = addNewCohort; cohorts = Model.Core.SuccessionCohorts as AgeCohort.ILandscapeCohorts; if (cohorts == null) throw new ApplicationException("The succession plug-in's cohorts don't support age-cohort interface"); speciesDataset = Model.Core.Species; int speciesCount = speciesDataset.Count; resprout = Model.Core.Landscape.NewSiteVar<BitArray>(); serotiny = Model.Core.Landscape.NewSiteVar<BitArray>(); foreach (ActiveSite site in Model.Core.Landscape.ActiveSites) { resprout[site] = new BitArray(speciesCount); serotiny[site] = new BitArray(speciesCount); } planting = new Planting(); trySeeding = new BlockRowBuffer<bool>(Model.Core.Landscape); hasSeeded = new BlockRowBuffer<BitArray>(Model.Core.Landscape); for (int col = 1; col <= hasSeeded.Columns; col++) { hasSeeded[col] = new BitArray(speciesCount); } }
//--------------------------------------------------------------------- public Seeding(SeedingAlgorithm seedingAlgorithm) { this.seedingAlgorithm = seedingAlgorithm; this.cohorts = Model.GetSuccession<AgeCohort.ICohort>().Cohorts; }
//--------------------------------------------------------------------- //public static void Initialize(double[,] establishProbabilities, public static void Initialize(SeedingAlgorithm seedingAlgorithm, Delegates.AddNewCohort addNewCohort) { // Reproduction.establishProbabilities = establishProbabilities; seeding = new Seeding(seedingAlgorithm); Reproduction.addNewCohort = addNewCohort; SiteVars.Cohorts = Model.Core.GetSiteVar<SiteCohorts>("Succession.Cohorts"); speciesDataset = Model.Core.Species; int speciesCount = speciesDataset.Count; resprout = Model.Core.Landscape.NewSiteVar<BitArray>(); serotiny = Model.Core.Landscape.NewSiteVar<BitArray>(); noEstablish = Model.Core.Landscape.NewSiteVar<bool>(); foreach (ActiveSite site in Model.Core.Landscape.ActiveSites) { resprout[site] = new BitArray(speciesCount); serotiny[site] = new BitArray(speciesCount); } noEstablish.ActiveSiteValues = false; planting = new Planting(); }