public ScanShipBarCodeForm()
{
InitializeComponent();
// 初始化扫描设备
scanManager = ScanFactory.CreateScan();
scanManager.Init();
scanManager.AttachScanNotify(ScanNotifyHandler);
}
/// <summary>
/// Checks the status of the ongoing scan.
/// </summary>
private void PollScanProgress()
{
IntPtr json = HBFunctions.hb_get_state_json(this.hbHandle);
string statusJson = Marshal.PtrToStringAnsi(json);
JsonState state = JsonConvert.DeserializeObject <JsonState>(statusJson);
if (state.State == NativeConstants.HB_STATE_SCANNING)
{
if (this.ScanProgress != null)
{
this.ScanProgress(this, new ScanProgressEventArgs
{
Progress = state.Scanning.Progress,
CurrentPreview = state.Scanning.Preview,
Previews = state.Scanning.PreviewCount,
CurrentTitle = state.Scanning.Title,
Titles = state.Scanning.TitleCount
});
}
}
else if (state.State == NativeConstants.HB_STATE_SCANDONE)
{
this.titles = new List <Title>();
var jsonMsg = HBFunctions.hb_get_title_set_json(this.hbHandle);
string scanJson = InteropUtilities.ToStringFromUtf8Ptr(jsonMsg);
JsonScanObject scanObject = JsonConvert.DeserializeObject <JsonScanObject>(scanJson);
foreach (Title title in ScanFactory.CreateTitleSet(scanObject))
{
// Set the Main Title.
this.featureTitle = title.IsMainFeature ? title.TitleNumber : 0;
this.titles.Add(title);
}
this.scanPollTimer.Stop();
if (this.ScanCompleted != null)
{
this.ScanCompleted(this, new System.EventArgs());
}
}
}
public SplitFilesControl(DocumentMetadata docData, ScanFactory scanFactory) : this()
{
_docData = docData;
_scanFactory = scanFactory;
}
public void ReadSpectrum(XmlReader reader, TRun run)
{
TScan scan = ScanFactory.CreateScan();
//The cycle number is within a kvp string in the following format: "sample=1 period=1 cycle=1 experiment=1"
//
//This is a bit code-soup but I didn't want to spend more than one line on it and it should be robust enough not just to select on index
//
//This has only been tested on Sciex converted data
//
//Paul Brack 2019/04/03
bool CycleInfoInID = false;
if (run.SourceFileTypes[0].EndsWith("wiff", StringComparison.InvariantCultureIgnoreCase) || run.SourceFileTypes[0].ToUpper().EndsWith("scan", StringComparison.InvariantCultureIgnoreCase))
{
if (!string.IsNullOrEmpty(reader.GetAttribute("id")) && !string.IsNullOrEmpty(reader.GetAttribute("id").Split(' ').DefaultIfEmpty("0").Single(x => x.Contains("cycle"))))
{
scan.Cycle = int.Parse(reader.GetAttribute("id").Split(' ').DefaultIfEmpty("0").Single(x => x.Contains("cycle")).Split('=').Last());
if (scan.Cycle != 0)//Some wiffs don't have that info so let's check
{
CycleInfoInID = true;
}
}
}
bool cvParamsRead = false;
double previousTargetMz = 0;
int currentCycle = 0;
bool hasAtLeastOneMS1 = false;
ScanAndTempProperties <TScan, TRun> scanAndTempProperties = new ScanAndTempProperties <TScan, TRun>(scan, run);
while (reader.Read() && !cvParamsRead)
{
if (reader.IsStartElement())
{
if (reader.LocalName == "cvParam")
{
switch (reader.GetAttribute("accession"))
{
case "MS:1000511":
scan.MsLevel = int.Parse(reader.GetAttribute("value"));
break;
case "MS:1000285":
scan.TotalIonCurrent = double.Parse(reader.GetAttribute("value"), CultureInfo.InvariantCulture);
break;
case "MS:1000016":
scan.ScanStartTime = double.Parse(reader.GetAttribute("value"), CultureInfo.InvariantCulture);
run.StartTime = Math.Min(run.StartTime, scan.ScanStartTime);
run.LastScanTime = Math.Max(run.LastScanTime, scan.ScanStartTime); //technically this is the starttime of the last scan not the completion time
break;
case "MS:1000829":
scan.IsolationWindowUpperOffset = double.Parse(reader.GetAttribute("value"), CultureInfo.InvariantCulture);
break;
case "MS:1000828":
scan.IsolationWindowLowerOffset = double.Parse(reader.GetAttribute("value"), CultureInfo.InvariantCulture);
break;
case "MS:1000827":
scan.IsolationWindowTargetMz = double.Parse(reader.GetAttribute("value"), CultureInfo.InvariantCulture);
break;
}
}
else if (reader.LocalName == "binaryDataArray")
{
GetBinaryData(reader, scanAndTempProperties);
}
if (scan.MsLevel == null && reader.LocalName == "referenceableParamGroupRef")
{
scan.MsLevel = reader.GetAttribute("ref") == SurveyScanReferenceableParamGroupId ? 1 : 2;
}
}
else if (reader.NodeType == XmlNodeType.EndElement && reader.LocalName == "spectrum")
{
if (!CycleInfoInID)
{
if (scan.MsLevel == 1)
{
currentCycle++;
scan.Cycle = currentCycle;
hasAtLeastOneMS1 = true;
}
//if there is ScanAndTempProperties ms1:
else if (hasAtLeastOneMS1)
{
scan.Cycle = currentCycle;
}
//if there is no ms1:
else
{
if (previousTargetMz >= scan.IsolationWindowTargetMz)
{
currentCycle++;
}
scan.Cycle = currentCycle;
}
}
previousTargetMz = scan.IsolationWindowTargetMz;
ProcessScanThreadedOrNot(scanAndTempProperties);
cvParamsRead = true;
}
}
}
