private void LoadPeaks(Run run)
{
var sourcePeaksFile = Path.Combine(run.DataSetPath, run.DatasetName + "_peaks.txt"); //FULL.txt";
RunUtilities.GetPeaks(run, sourcePeaksFile);
//create / load
//TODO: adjust the RunUtilities class so that it can simply take a run and create the _peaks and load them.
}
//note: does not actually create peaks. Only loads them. An exception is thrown if it's not there.
private void CreatePeaksIfNeeded()
{
if (_run.ResultCollection.MSPeakResultList.Count == 0)
{
var expectedPeaksfile = Path.Combine(_run.DataSetPath, _run.DatasetName + "_peaks.txt");
if (!File.Exists(expectedPeaksfile))
{
var ex = new Exception("No Peaks file found.");
throw ex;
// CreatePeaksFile();
//ExportPeaks_copied(expectedPeaksfile);
}
RunUtilities.GetPeaks(_run, expectedPeaksfile);
}
}
private void LoadPeaks(string userProvidedOutputFolderPath = null)
{
string outputFolderPath;
if (string.IsNullOrEmpty(userProvidedOutputFolderPath))
{
outputFolderPath = Run.DataSetPath;
}
else
{
outputFolderPath = userProvidedOutputFolderPath;
}
var expectedPeaksFile = Path.Combine(outputFolderPath, Run.DatasetName + "_peaks.txt");
RunUtilities.GetPeaks(Run, expectedPeaksFile);
}