public void ValidateDataTest_temp() //purpose is to compare
{
var testMz5File = @"C:\Sipper\SipperDemo\RawDataFiles\Yellow_C13_070_23Mar10_Griffin_10-01-28.mz5";
var testThermoFile =
@"\\protoapps\UserData\Slysz\Standard_Testing\Targeted_FeatureFinding\SIPPER_standard_testing\Yellow_C13_070_23Mar10_Griffin_10-01-28.raw";
var mz5run = new RunFactory().CreateRun(testMz5File);
mz5run.IsDataThresholded = true;
var thermoRun = new RunFactory().CreateRun(testThermoFile);
var testScanMz5 = 6010;
var testScanThermo = 6011;
var testScanSet1 = new ScanSet(testScanMz5);
var testScanSetThermo = new ScanSet(testScanThermo);
mz5run.CurrentScanSet = testScanSet1;
thermoRun.CurrentScanSet = testScanSetThermo;
mz5run.GetMassSpectrum(testScanSet1);
thermoRun.GetMassSpectrum(testScanSetThermo);
Assert.AreEqual(mz5run.XYData.Xvalues.Length, thermoRun.XYData.Xvalues.Length);
for (var i = 0; i < mz5run.XYData.Xvalues.Length; i++)
{
Assert.AreEqual(mz5run.XYData.Xvalues[i], thermoRun.XYData.Xvalues[i]);
}
var peakDetector = new DeconToolsPeakDetectorV2();
peakDetector.PeakToBackgroundRatio = 3;
peakDetector.SignalToNoiseThreshold = 2;
peakDetector.Execute(mz5run.ResultCollection);
//peakDetector.Execute(thermoRun.ResultCollection);
TestUtilities.DisplayPeaks(mz5run.PeakList);
Console.WriteLine();
Console.WriteLine();
// TestUtilities.DisplayPeaks(thermoRun.PeakList);
}
public void ValidateDataTest1() //purpose is to compare
{
var testMz5File = @"\\protoapps\UserData\Slysz\DeconTools_TestFiles\mzXML\QC_Shew_08_04-pt5-2_11Jan09_Sphinx_08-11-18.mz5";
var testThermoFile = FileRefs.RawDataMSFiles.OrbitrapStdFile1;
var mz5run = new RunFactory().CreateRun(testMz5File);
var thermoRun = new RunFactory().CreateRun(testThermoFile);
var testScanMz5 = 6004;
var testScanThermo = 6005;
var testScanSet1 = new ScanSet(testScanMz5);
var testScanSetThermo = new ScanSet(testScanThermo);
mz5run.CurrentScanSet = testScanSet1;
thermoRun.CurrentScanSet = testScanSetThermo;
mz5run.XYData = mz5run.GetMassSpectrum(testScanSet1);
thermoRun.XYData = thermoRun.GetMassSpectrum(testScanSetThermo);
Assert.AreEqual(mz5run.XYData.Xvalues.Length, thermoRun.XYData.Xvalues.Length);
for (var i = 0; i < mz5run.XYData.Xvalues.Length; i++)
{
Assert.AreEqual(mz5run.XYData.Xvalues[i], thermoRun.XYData.Xvalues[i]);
}
var peakDetector = new DeconToolsPeakDetectorV2();
peakDetector.PeakToBackgroundRatio = 3;
peakDetector.SignalToNoiseThreshold = 2;
//peakDetector.Execute(mz5run.ResultCollection);
peakDetector.Execute(thermoRun.ResultCollection);
//TestUtilities.DisplayPeaks(mz5run.PeakList);
Console.WriteLine();
Console.WriteLine();
TestUtilities.DisplayPeaks(thermoRun.PeakList);
}