public void LoopBack()
{
var version = new DataSourceVersion("onekgen", "v0.3", DateTime.Now.Ticks);
using (var reader = new RefMinorReader(new StreamReader(GetStream()), GetSequenceProvider()))
using (var stream = new MemoryStream())
using (var indexStream = new MemoryStream())
using (var writer = new RefMinorDbWriter(new ExtendedBinaryWriter(stream), new ExtendedBinaryWriter(indexStream), version, GetSequenceProvider(), SaCommon.SchemaVersion))
{
writer.Write(reader.GetItems());
stream.Position = 0;
indexStream.Position = 0;
using (var dbReader = new RefMinorDbReader(stream, indexStream))
{
Assert.Equal("T", dbReader.GetGlobalMajorAllele(ChromosomeUtilities.Chr1, 15274));
Assert.Null(dbReader.GetGlobalMajorAllele(ChromosomeUtilities.Chr1, 1524));
}
}
}
public RefMinorProvider(Stream dbStream, Stream indexStream)
{
_reader = new RefMinorDbReader(dbStream, indexStream);
}
