protected override void OnExecute(CommandProcessor theProcessor, IUpdateContext updateContext)
{
string seriesUid = _file.DataSet[DicomTags.SeriesInstanceUid].GetString(0, String.Empty);
string sopUid = _file.DataSet[DicomTags.SopInstanceUid].GetString(0, String.Empty);
ImageSetDescriptor imageSet = new ImageSetDescriptor(_file.DataSet);
ReconcileStudyQueueDescription queueDesc = GetQueueEntryDescription(_storageLocation, _file);
ReconcileStudyWorkQueueData detailsData = new ReconcileStudyWorkQueueData
{
StoragePath = _reconcileImageStorage.GetFolderPath(),
Details = new ImageSetDetails(_file.DataSet)
};
detailsData.Details.InsertFile(_file);
IInsertStudyIntegrityQueue broker = updateContext.GetBroker <IInsertStudyIntegrityQueue>();
InsertStudyIntegrityQueueParameters parameters = new InsertStudyIntegrityQueueParameters
{
Description = queueDesc.ToString(),
StudyInstanceUid = _storageLocation.StudyInstanceUid,
ServerPartitionKey = _storageLocation.ServerPartition.Key,
StudyStorageKey = _storageLocation.Key,
StudyIntegrityReasonEnum = _reason,
SeriesInstanceUid = seriesUid,
SeriesDescription = sopUid,
SopInstanceUid =
_file.DataSet[DicomTags.SopInstanceUid].GetString(0,
String
.
Empty),
StudyData = XmlUtils.SerializeAsXmlDoc(imageSet),
Details = XmlUtils.SerializeAsXmlDoc(detailsData),
GroupID = _uidGroup,
UidRelativePath =
_reconcileImageStorage.GetSopRelativePath(
_file.DataSet[DicomTags.SopInstanceUid].ToString())
};
StudyIntegrityQueue item = broker.FindOne(parameters);
if (item == null)
{
throw new ApplicationException("Unable to update reconcile queue");
}
_siqItem = item;
if (!parameters.Inserted)
{
// Need to re-use the path that's already assigned for this entry
ReconcileStudyWorkQueueData data = XmlUtils.Deserialize <ReconcileStudyWorkQueueData>(item.Details);
data.Details.InsertFile(_file);
XmlDocument updatedQueueDataXml = XmlUtils.SerializeAsXmlDoc(data);
IStudyIntegrityQueueEntityBroker updateBroker = updateContext.GetBroker <IStudyIntegrityQueueEntityBroker>();
StudyIntegrityQueueUpdateColumns columns = new StudyIntegrityQueueUpdateColumns
{
Details = updatedQueueDataXml
};
updateBroker.Update(item.GetKey(), columns);
}
}
protected override void ProcessItem(Model.WorkQueue item)
{
Platform.CheckForNullReference(item, "item");
Platform.CheckForNullReference(item.Data, "item.Data");
_reconcileQueueData = XmlUtils.Deserialize <ReconcileStudyWorkQueueData>(WorkQueueItem.Data);
LoadUids(item);
if (WorkQueueUidList.Count == 0)
{
DirectoryUtility.DeleteIfEmpty(_reconcileQueueData.StoragePath);
Platform.Log(LogLevel.Info, "Reconcile Cleanup is completed. GUID={0}.", WorkQueueItem.GetKey());
PostProcessing(WorkQueueItem,
WorkQueueProcessorStatus.Complete,
WorkQueueProcessorDatabaseUpdate.ResetQueueState);
}
else
{
Platform.Log(LogLevel.Info,
"Starting Cleanup of Reconcile Queue item for study {0} for Patient {1} (PatientId:{2} A#:{3}) on Partition {4}, {5} objects",
Study.StudyInstanceUid, Study.PatientsName, Study.PatientId,
Study.AccessionNumber, ServerPartition.Description,
WorkQueueUidList.Count);
ProcessUidList();
Platform.Log(LogLevel.Info, "Successfully complete Reconcile Cleanup. GUID={0}. {0} uids processed.", WorkQueueItem.GetKey(), WorkQueueUidList.Count);
PostProcessing(WorkQueueItem,
WorkQueueProcessorStatus.Pending,
WorkQueueProcessorDatabaseUpdate.None);
}
}
protected override void ProcessItem(Model.WorkQueue item)
{
Platform.CheckForNullReference(item, "item");
Platform.CheckForNullReference(item.Data, "item.Data");
_reconcileQueueData = XmlUtils.Deserialize <ReconcileStudyWorkQueueData>(WorkQueueItem.Data);
LoadUids(item);
InitializeContext();
SetupProcessor();
if (WorkQueueUidList.Count == 0)
{
Platform.Log(LogLevel.Info,
"Completing study reconciliation for Study {0}, Patient {1} (PatientId:{2} A#:{3}) on Partition {4}, {5} objects",
Study.StudyInstanceUid, Study.PatientsName, Study.PatientId,
Study.AccessionNumber, ServerPartition.Description, WorkQueueUidList.Count);
ExecuteCommands(true);
}
else
{
Platform.Log(LogLevel.Info,
"Reconciling study {0} for Patient {1} (PatientId:{2} A#:{3}) on Partition {4}, {5} objects",
Study.StudyInstanceUid, Study.PatientsName, Study.PatientId,
Study.AccessionNumber, ServerPartition.Description, WorkQueueUidList.Count);
ExecuteCommands(false);
}
}
private string GetWorkQueueSecondaryFolder(Model.WorkQueue item)
{
if (WorkQueueHasSecondaryPath(item))
{
if (item.WorkQueueTypeEnum.Equals(WorkQueueTypeEnum.ProcessDuplicate))
{
ProcessDuplicateQueueEntryQueueData queueData = XmlUtils.Deserialize <ProcessDuplicateQueueEntryQueueData>(item.Data);
DirectoryInfo dir = new DirectoryInfo(queueData.DuplicateSopFolder);
return(dir.Parent.FullName);
}
if (item.WorkQueueTypeEnum.Equals(WorkQueueTypeEnum.CleanupDuplicate))
{
ProcessDuplicateQueueEntryQueueData queueData = XmlUtils.Deserialize <ProcessDuplicateQueueEntryQueueData>(item.Data);
DirectoryInfo dir = new DirectoryInfo(queueData.DuplicateSopFolder);
return(dir.Parent.FullName);
}
if (item.WorkQueueTypeEnum.Equals(WorkQueueTypeEnum.ReconcileCleanup))
{
ReconcileStudyWorkQueueData queueData = XmlUtils.Deserialize <ReconcileStudyWorkQueueData>(item.Data);
DirectoryInfo dir = new DirectoryInfo(queueData.StoragePath);
return(dir.Parent.FullName);
}
if (item.WorkQueueTypeEnum.Equals(WorkQueueTypeEnum.ReconcileStudy))
{
ReconcileStudyWorkQueueData queueData = XmlUtils.Deserialize <ReconcileStudyWorkQueueData>(item.Data);
DirectoryInfo dir = new DirectoryInfo(queueData.StoragePath);
return(dir.Parent.FullName);
}
}
return(null);
}
public InconsistentDataSIQRecord(StudyIntegrityQueue queue)
{
_queueItem = queue;
ReconcileStudyWorkQueueData data = XmlUtils.Deserialize <ReconcileStudyWorkQueueData>(queue.Details);
_conflictingImageDetails = data.Details;
_conflictingImageDescriptor = XmlUtils.Deserialize <ImageSetDescriptor>(queue.StudyData);
StudyStorage storage = StudyStorage.Load(HttpContextData.Current.ReadContext, queue.StudyStorageKey);
Study study = storage.LoadStudy(HttpContextData.Current.ReadContext);
_existingStudyInfo = new StudyInformation(new ServerEntityAttributeProvider(study));
}
private string GetSIQItemStorageFolder(StudyIntegrityQueue queue)
{
if (queue.StudyIntegrityReasonEnum.Equals(StudyIntegrityReasonEnum.InconsistentData))
{
ReconcileStudyWorkQueueData data = XmlUtils.Deserialize <ReconcileStudyWorkQueueData>(queue.Details);
DirectoryInfo dir = new DirectoryInfo(data.StoragePath);
return(dir.Parent.FullName);
}
if (queue.StudyIntegrityReasonEnum.Equals(StudyIntegrityReasonEnum.Duplicate))
{
DuplicateSIQQueueData data = XmlUtils.Deserialize <DuplicateSIQQueueData>(queue.Details);
DirectoryInfo dir = new DirectoryInfo(data.StoragePath);
return(dir.Parent.FullName);
}
return(null);
}
private static void ReconcileStudy(string command, StudyIntegrityQueue item)
{
//Ignore the reconcile command if the item is null.
if (item == null)
{
return;
}
// Preload the change description so its not done during the DB transaction
XmlDocument changeDescription = new XmlDocument();
changeDescription.LoadXml(command);
// The Xml in the SIQ item was generated when the images were received and put into the SIQ.
// We now add the user info to it so that it will be logged in the history
ReconcileStudyWorkQueueData queueData = XmlUtils.Deserialize <ReconcileStudyWorkQueueData>(item.Details);
queueData.TimeStamp = Platform.Time;
queueData.UserId = ServerHelper.CurrentUserName;
using (IUpdateContext context = PersistentStoreRegistry.GetDefaultStore().OpenUpdateContext(UpdateContextSyncMode.Flush))
{
LockStudyParameters lockParms = new LockStudyParameters
{
QueueStudyStateEnum = QueueStudyStateEnum.ReconcileScheduled,
StudyStorageKey = item.StudyStorageKey
};
ILockStudy broker = context.GetBroker <ILockStudy>();
broker.Execute(lockParms);
if (!lockParms.Successful)
{
throw new ApplicationException(lockParms.FailureReason);
}
//Add to Study History
StudyHistoryeAdaptor historyAdaptor = new StudyHistoryeAdaptor();
StudyHistoryUpdateColumns parameters = new StudyHistoryUpdateColumns
{
StudyData = item.StudyData,
ChangeDescription = changeDescription,
StudyStorageKey = item.StudyStorageKey,
StudyHistoryTypeEnum = StudyHistoryTypeEnum.StudyReconciled
};
StudyHistory history = historyAdaptor.Add(context, parameters);
//Create WorkQueue Entry
WorkQueueAdaptor workQueueAdaptor = new WorkQueueAdaptor();
WorkQueueUpdateColumns row = new WorkQueueUpdateColumns
{
Data = XmlUtils.SerializeAsXmlDoc(queueData),
ServerPartitionKey = item.ServerPartitionKey,
StudyStorageKey = item.StudyStorageKey,
StudyHistoryKey = history.GetKey(),
WorkQueueTypeEnum = WorkQueueTypeEnum.ReconcileStudy,
WorkQueueStatusEnum = WorkQueueStatusEnum.Pending,
ScheduledTime = Platform.Time,
ExpirationTime = Platform.Time.AddHours(1),
GroupID = item.GroupID
};
WorkQueue newWorkQueueItem = workQueueAdaptor.Add(context, row);
StudyIntegrityQueueUidAdaptor studyIntegrityQueueUidAdaptor = new StudyIntegrityQueueUidAdaptor();
StudyIntegrityQueueUidSelectCriteria crit = new StudyIntegrityQueueUidSelectCriteria();
crit.StudyIntegrityQueueKey.EqualTo(item.GetKey());
IList <StudyIntegrityQueueUid> uidList = studyIntegrityQueueUidAdaptor.Get(context, crit);
WorkQueueUidAdaptor workQueueUidAdaptor = new WorkQueueUidAdaptor();
WorkQueueUidUpdateColumns update = new WorkQueueUidUpdateColumns();
foreach (StudyIntegrityQueueUid uid in uidList)
{
update.WorkQueueKey = newWorkQueueItem.GetKey();
update.SeriesInstanceUid = uid.SeriesInstanceUid;
update.SopInstanceUid = uid.SopInstanceUid;
update.RelativePath = uid.RelativePath;
workQueueUidAdaptor.Add(context, update);
}
//DeleteStudyIntegrityQueue Item
StudyIntegrityQueueUidSelectCriteria criteria = new StudyIntegrityQueueUidSelectCriteria();
criteria.StudyIntegrityQueueKey.EqualTo(item.GetKey());
studyIntegrityQueueUidAdaptor.Delete(context, criteria);
StudyIntegrityQueueAdaptor studyIntegrityQueueAdaptor = new StudyIntegrityQueueAdaptor();
studyIntegrityQueueAdaptor.Delete(context, item.GetKey());
context.Commit();
}
}
