private void SetConfiguration()
{
QualFeatureConfig.InitRegistryFromAppConfig();
AppFeatureConfig.Configuration.SetKeyState(AppFeatureConfig.Key_ProfinderApp, true);
Console.WriteLine("Configuration Set");
}
public List <DataTypes.CompoundGroup> GetCompoundGroups(List <string> analysisFiles)
{
try
{
qualAppLogic.AppExecutionMode = AppExecutionMode.WorkListAutomation;
CmdInitializeApplication cmdInit = new CmdInitializeApplication(qualAppLogic);
ExecuteCommand(qualAppLogic, cmdInit);
QualFeatureConfig.InitRegistryFromAppConfig();
qualAppLogic.AppProgressEvent += new AppProgressEventHandler(OnAppProgressEvent);
IAppState appState = qualAppLogic as IAppState;
//appState.ThreadErrorReporter = m_messageReporter;
AnalysisMethodLoadOptions loadMethod = GetAnalysisMethodLoadOptions(null);
//if (analysisFiles.Count > 0)
//{
bool loadResults = false;
bool runLoadTimeScripts = false;
CmdOpenAnalysisFile cmdOpenAnalysis = new CmdOpenAnalysisFile
(qualAppLogic,
analysisFiles.ToArray(),
loadMethod,
loadResults,
runLoadTimeScripts);
ExecuteCommand(qualAppLogic, cmdOpenAnalysis);
RunScript(qualAppLogic, analysisFiles);
IEnumerable <Agilent.MassSpectrometry.DataAnalysis.ICompoundGroup> cpdGroups = qualAppLogic.DataStore.CompoundGroups;
List <DataTypes.CompoundGroup> compoundGroups = new List <DataTypes.CompoundGroup>();
foreach (Agilent.MassSpectrometry.DataAnalysis.ICompoundGroup cpdGroup in cpdGroups)
{
DataTypes.CompoundGroup compoundGroup = getICompoundGroup(cpdGroup, analysisFiles) as DataTypes.CompoundGroup;
compoundGroups.Add(compoundGroup);
}
Console.ReadKey();
}
catch (MSDAApplicationException msdaExep)
{
Console.WriteLine(msdaExep.Message);
}
catch (Exception e)
{
string analysisName = "";
for (int analysisInd = 0; analysisInd < analysisFiles.Count; analysisInd++)
{
if (analysisName == "")
{
analysisName = analysisFiles[analysisInd];
}
else
{
analysisName = analysisName + " , " + analysisFiles[analysisInd];
}
}
Console.WriteLine(e.StackTrace);
}
return(null);
}