public RefAligner(List<QPeptide> Peptides, List<QProtein> Proteins,int FileCount, int RefNumber)
{
AlList = new List<Object>();
AlLine = new QAlignment[FileCount];
this.FileCount = FileCount;
this.RefNumber = RefNumber;
for (int i = 0 ; i < FileCount ; i++){
AlLine[i] = new QAlignment(Peptides, Proteins, i, RefNumber);
AlList.Add(AlLine[i]);
}
}
public override void ThreadProc(Object stateInfo)
{
int i, j;
i = (stateInfo as QAlInfo).i;
j = (stateInfo as QAlInfo).j;
QAlignment Align = new QAlignment(Peptides, Proteins, i, j);
Align.Run();
Align.Proteins.Sort(new ProteinPair.byIPI());
Align.Peptides.Sort(new PeptidePair.bySet());
//копирование итоговых значений в итоговые массивы
for (int k = 0 ; k < Peptides.Count ; k++){
PeptidePair PP = Align.Peptides[k];
if (PP.Ratio == 0.0){
PeptideRatios[i,j][k] = 0.0;
}else{
PeptideRatios[i,j][k] = PP.Ratio;
}
}
for (int k = 0 ; k < Proteins.Count ; k++){
ProteinPair PP = Align.Proteins[k];
ProteinMedians[i, j, k] = PP.Median;
ProteinSlopes[i, j, k] = PP.Slope;
ProteinDeltas[i, j, k] = PP.SlopeDelta;
}
lock (ForCountLock){
Count++;
}
}
