public override void GlobalContext()
{
base.GlobalContext();
_simulation = DomainFactoryForSpecs.CreateDefaultSimulation();
_moleculeBuildingBlock = new MoleculeBuildingBlock();
var compoundProperties = _simulation.CompoundPropertiesList.First();
_compoundName = compoundProperties.Compound.Name;
_moleculeBuildingBlock.Add(new MoleculeBuilder {
Name = _compoundName, QuantityType = QuantityType.Drug
});
_moleculeBuildingBlock.Add(new MoleculeBuilder {
Name = "Enzyme", QuantityType = QuantityType.Enzyme
});
_moleculeBuildingBlock.Add(new MoleculeBuilder {
Name = "Metabolite", QuantityType = QuantityType.Metabolite
});
_moleculeBuildingBlock.Add(new MoleculeBuilder {
Name = "Protein", QuantityType = QuantityType.OtherProtein
});
var specificBindingSelection = new ProcessSelection {
CompoundName = _compoundName, MoleculeName = "Protein", ProcessName = "Specific Binding"
};
var metabolizationSelection = new EnzymaticProcessSelection {
CompoundName = _compoundName, MoleculeName = "Protein", ProcessName = "Metabolism"
};
_complexProductName = specificBindingSelection.ProductName(CoreConstants.Molecule.Complex);
_metaboliteProductName = specificBindingSelection.ProductName(CoreConstants.Molecule.Metabolite);
_moleculeBuildingBlock.Add(new MoleculeBuilder {
Name = _complexProductName, QuantityType = QuantityType.Complex
});
compoundProperties.Processes.SpecificBindingSelection.AddPartialProcessSelection(specificBindingSelection);
compoundProperties.Processes.MetabolizationSelection.AddPartialProcessSelection(metabolizationSelection);
}
public override Task <IProcessMapping> MapToModel(CompoundProcessSelection snapshot, Model.CompoundProcess process)
{
IProcessMapping processMapping;
switch (process)
{
case SystemicProcess systemicProcess:
processMapping = new SystemicProcessSelection
{
ProcessType = systemicProcess.SystemicProcessType,
};
break;
case EnzymaticProcess _:
processMapping = new EnzymaticProcessSelection
{
MetaboliteName = snapshot.MetaboliteName,
};
break;
case InteractionProcess _:
processMapping = new InteractionSelection();
break;
default:
processMapping = new ProcessSelection();
break;
}
processMapping.ProcessName = snapshot.Name;
processMapping.CompoundName = process.ParentCompound.Name;
processMapping.MoleculeName = snapshot.MoleculeName;
return(Task.FromResult(processMapping));
}
protected override Task Context()
{
sut = new ProcessMappingMapper();
_compound = new Compound
{
Name = "COMP",
};
_enzymaticProcess = new EnzymaticProcess().WithName("MetaProcess");
_enzymaticProcessSelection = new EnzymaticProcessSelection
{
CompoundName = _compound.Name,
MetaboliteName = "META",
MoleculeName = "CYP",
ProcessName = _enzymaticProcess.Name
};
_specificBindingProcess = new SpecificBindingPartialProcess().WithName("BindingProcess");
_specificBindingPartialProcessSelection = new ProcessSelection
{
CompoundName = _compound.Name,
MoleculeName = "BINDER",
ProcessName = _specificBindingProcess.Name
};
_transportSystemicProcess = new SystemicProcess
{
Name = "SystemicTransport",
SystemicProcessType = SystemicProcessTypes.GFR
};
_transportSystemicProcessSelection = new SystemicProcessSelection
{
CompoundName = _compound.Name,
ProcessName = _transportSystemicProcess.Name,
ProcessType = _transportSystemicProcess.SystemicProcessType
};
_interactionProcess = new InductionProcess().WithName("InteractionProcess");
_interactionSelection = new InteractionSelection
{
CompoundName = _compound.Name,
ProcessName = _interactionProcess.Name,
MoleculeName = "INHIBITOR"
};
_compound.AddProcess(_enzymaticProcess);
_compound.AddProcess(_transportSystemicProcess);
_compound.AddProcess(_interactionProcess);
_compound.AddProcess(_specificBindingProcess);
return(_completed);
}
private void Button_LoadProcess_Click(object sender, RoutedEventArgs e)
{
ProcessSelection processSelection = new ProcessSelection();
processSelection.Top = this.Top;
processSelection.Left = this.Left;
Nullable <bool> dialogResult = processSelection.ShowDialog();
if (dialogResult == true)
{
if (processSelection.NewSelectedProcesses != null)
{
foreach (var SelectedProcess in processSelection.NewSelectedProcesses)
{
SelectedProcess.Hooked = true;
AllSelectedProcesses.Add(SelectedProcess);
}
ListBox_RunningProcesses.Items.Refresh();
}
}
}
public override Task <IProcessMapping> MapToModel(CompoundProcessSelection snapshot, CompoundProcessSnapshotContext snapshotContext)
{
IProcessMapping processMapping;
var process = snapshotContext.Process;
switch (process)
{
case SystemicProcess systemicProcess:
processMapping = new SystemicProcessSelection
{
ProcessType = systemicProcess.SystemicProcessType,
};
break;
case EnzymaticProcess _:
processMapping = new EnzymaticProcessSelection
{
MetaboliteName = snapshot.MetaboliteName,
};
break;
case InteractionProcess _:
processMapping = new InteractionSelection();
break;
default:
processMapping = new ProcessSelection();
break;
}
processMapping.ProcessName = ModelValueFor(snapshot.Name);
//Parent compound may be null for process that are representing a non existent selection
processMapping.CompoundName = ModelValueFor(process.ParentCompound?.Name);
processMapping.MoleculeName = ModelValueFor(snapshot.MoleculeName);
return(Task.FromResult(processMapping));
}
private void DoButtonUp()
{
isButtonDown = false;
stoppedVertialOffset = ScrollOffset;
//scrollViewer.ScrollToVerticalOffset(ScrollOffset);
// No down-event, before the up-event
if (((timeStart == null) || !timeStart.HasValue) ||
((timeApex == null) || !timeApex.HasValue))
{
return;
}
// This was a tap or delibrate scroll, not a drag-scroll
TimeSpan determiningLength = DateTime.Now - timeStart.Value;
// Process Selection
if (ProcessSelection != null)
{
if (determiningLength.TotalMilliseconds > 1200)
{
EndAnimation();
return;
}
if (initialVertialOffset == stoppedVertialOffset)
{
ProcessSelection.Invoke(this, new EventArgs());
return;
}
}
else if ((initialVertialOffset == stoppedVertialOffset) ||
(determiningLength.TotalMilliseconds > 1200))
{
EndAnimation();
return;
}
TimeSpan brushStrokeDurration = (DateTime.Now - timeApex.Value);
int ms = (int)(brushStrokeDurration.TotalMilliseconds / 10);
if (!isDeclining)
{
strokeLength = (MouseMoveApogy.Value.Y - MouseMoveParogy.Value.Y) / 10;
}
else
{
strokeLength = (MouseMoveParogy.Value.Y - MouseMoveApogy.Value.Y) / 10;
}
if ((strokeLength > -1) && (strokeLength < 0))
{
strokeLength = -1;
}
if ((strokeLength < 1) && (strokeLength > 0))
{
strokeLength = 1;
}
// Start the scrolling animation
int durationMilliseconds = (int)Math.Abs(GetScrollDistantance() / strokeLength * ms);
if (durationMilliseconds > 0)
{
Duration spanDuration =
new Duration(new TimeSpan(0, 0, 0, 0, durationMilliseconds));
StartAnimation(spanDuration);
}
}
protected override Task Context()
{
_calculationMethodCacheMapper = A.Fake <CalculationMethodCacheMapper>();
_processMappingMapper = A.Fake <ProcessMappingMapper>();
_logger = A.Fake <ILogger>();
_project = new PKSimProject();
_calculationMethodSnapshot = new CalculationMethodCache();
sut = new CompoundPropertiesMapper(_calculationMethodCacheMapper, _processMappingMapper, _logger);
_compoundGroupSelectionOneAlternative = new CompoundGroupSelection
{
AlternativeName = "ALT1",
GroupName = "ALTERNATIVE_GROUP_1"
};
_compoundGroupSelectionTwoAlternatives = new CompoundGroupSelection
{
AlternativeName = "ALT2",
GroupName = "ALTERNATIVE_GROUP_2"
};
_compound = new Compound
{
Name = "COMP",
};
_protocol = new SimpleProtocol
{
Name = "PROTOCOL"
};
_parameterAlternativeGroupWithOneAlternative = new ParameterAlternativeGroup {
Name = _compoundGroupSelectionOneAlternative.GroupName
};
_parameterAlternativeGroupWithTwoAlternatives = new ParameterAlternativeGroup {
Name = _compoundGroupSelectionTwoAlternatives.GroupName
};
_parameterAlternativeGroupWithTwoAlternatives.AddAlternative(new ParameterAlternative {
Name = "ALT1"
});
_parameterAlternativeGroupWithTwoAlternatives.AddAlternative(new ParameterAlternative {
Name = "ALT2"
});
_compound.AddParameterAlternativeGroup(_parameterAlternativeGroupWithOneAlternative);
_compound.AddParameterAlternativeGroup(_parameterAlternativeGroupWithTwoAlternatives);
_compoundProperties = new Model.CompoundProperties();
_compoundProperties.AddCompoundGroupSelection(_compoundGroupSelectionOneAlternative);
_compoundProperties.AddCompoundGroupSelection(_compoundGroupSelectionTwoAlternatives);
_compoundProperties.Compound = _compound;
_enzymaticProcess = new EnzymaticProcess {
Name = "EnzymaticProcess"
};
_anotherEnzymaticProcess = new EnzymaticProcess {
Name = "AnotherEnzymaticProcess", MoleculeName = "CYP3A4"
};
_specificBindingProcess = new SpecificBindingPartialProcess {
Name = "SpecificBinding"
};
_gfrTransportProcess = new SystemicProcess {
Name = "Transport", SystemicProcessType = SystemicProcessTypes.GFR
};
_hepaticEnzymaticProcess = new SystemicProcess {
Name = "Plasma Clearance", SystemicProcessType = SystemicProcessTypes.Hepatic
};
_compound.AddProcess(_enzymaticProcess);
_compound.AddProcess(_specificBindingProcess);
_compound.AddProcess(_gfrTransportProcess);
_compound.AddProcess(_hepaticEnzymaticProcess);
_enzymaticPartialProcessSelection = new EnzymaticProcessSelection {
ProcessName = _enzymaticProcess.Name
};
_noEnzymaticSystemicProcessSelection = new SystemicProcessSelection {
ProcessType = SystemicProcessTypes.Hepatic
};
_specificBindingPartialProcessSelection = new ProcessSelection {
ProcessName = _specificBindingProcess.Name
};
_transportSystemicProcessSelection = new SystemicProcessSelection {
ProcessName = _gfrTransportProcess.Name, ProcessType = _gfrTransportProcess.SystemicProcessType,
};
_noEnzymaticPartialProcessSelection = new EnzymaticProcessSelection {
MoleculeName = _anotherEnzymaticProcess.MoleculeName
};
_compoundProperties.Processes.MetabolizationSelection.AddPartialProcessSelection(_enzymaticPartialProcessSelection);
_compoundProperties.Processes.MetabolizationSelection.AddPartialProcessSelection(_noEnzymaticPartialProcessSelection);
_compoundProperties.Processes.MetabolizationSelection.AddSystemicProcessSelection(_noEnzymaticSystemicProcessSelection);
_compoundProperties.Processes.SpecificBindingSelection.AddPartialProcessSelection(_specificBindingPartialProcessSelection);
_compoundProperties.Processes.TransportAndExcretionSelection.AddSystemicProcessSelection(_transportSystemicProcessSelection);
_snapshotProcess1 = new CompoundProcessSelection {
Name = _enzymaticPartialProcessSelection.ProcessName
};
_snapshotProcess2 = new CompoundProcessSelection {
Name = _specificBindingPartialProcessSelection.ProcessName
};
_snapshotProcess3 = new CompoundProcessSelection {
Name = _transportSystemicProcessSelection.ProcessName
};
_snapshotProcess4 = new CompoundProcessSelection {
SystemicProcessType = _noEnzymaticSystemicProcessSelection.ProcessType.SystemicProcessTypeId.ToString()
};
_snapshotProcess5 = new CompoundProcessSelection {
MoleculeName = _noEnzymaticPartialProcessSelection.MoleculeName
};
_formulation = new Formulation
{
Id = "123456"
};
_compoundProperties.ProtocolProperties.Protocol = _protocol;
_compoundProperties.ProtocolProperties.AddFormulationMapping(new FormulationMapping
{
FormulationKey = "F1",
TemplateFormulationId = _formulation.Id
});
_project.AddBuildingBlock(_formulation);
A.CallTo(() => _calculationMethodCacheMapper.MapToSnapshot(_compoundProperties.CalculationMethodCache)).Returns(_calculationMethodSnapshot);
A.CallTo(() => _processMappingMapper.MapToSnapshot(_enzymaticPartialProcessSelection)).Returns(_snapshotProcess1);
A.CallTo(() => _processMappingMapper.MapToSnapshot(_specificBindingPartialProcessSelection)).Returns(_snapshotProcess2);
A.CallTo(() => _processMappingMapper.MapToSnapshot(_transportSystemicProcessSelection)).Returns(_snapshotProcess3);
A.CallTo(() => _processMappingMapper.MapToSnapshot(_noEnzymaticSystemicProcessSelection)).Returns(_snapshotProcess4);
A.CallTo(() => _processMappingMapper.MapToSnapshot(_noEnzymaticPartialProcessSelection)).Returns(_snapshotProcess5);
A.CallTo(() => _processMappingMapper.MapToModel(_snapshotProcess1, _enzymaticProcess)).Returns(_enzymaticPartialProcessSelection);
A.CallTo(() => _processMappingMapper.MapToModel(_snapshotProcess2, _specificBindingProcess)).Returns(_specificBindingPartialProcessSelection);
A.CallTo(() => _processMappingMapper.MapToModel(_snapshotProcess3, _gfrTransportProcess)).Returns(_transportSystemicProcessSelection);
A.CallTo(() => _processMappingMapper.MapToModel(_snapshotProcess4, A <NotSelectedSystemicProcess> ._)).Returns(_noEnzymaticSystemicProcessSelection);
A.CallTo(() => _processMappingMapper.MapToModel(_snapshotProcess5, A <EnzymaticProcess> ._)).Returns(_noEnzymaticPartialProcessSelection);
return(_completed);
}
protected override async Task Because()
{
_processSelection = await sut.MapToModel(_snapshot, _specificBindingProcess) as ProcessSelection;
}
private void StroopMainForm_Load(object sender, EventArgs e)
{
// Temp: Remove "Other" tab
#if RELEASE
tabControlMain.TabPages.Remove(tabPageExpressions);
#endif
_sm64Stream = new ProcessStream();
_sm64Stream.OnUpdate += OnUpdate;
_disManager = new DisassemblyManager(this, richTextBoxDissasembly, maskedTextBoxDisStart, _sm64Stream, buttonDisGo);
_scriptManager = new ScriptManager(_sm64Stream, _scriptParser, checkBoxUseRomHack);
_hackManager = new HackManager(_sm64Stream, _romHacks, checkedListBoxHacks);
// Create map manager
MapGui mapGui = new MapGui();
mapGui.GLControl = glControlMap;
mapGui.MapIdLabel = labelMapId;
mapGui.MapNameLabel = labelMapName;
mapGui.MapSubNameLabel = labelMapSubName;
mapGui.PuValueLabel = labelMapPuValue;
mapGui.QpuValueLabel = labelMapQpuValue;
mapGui.MapIconSizeTrackbar = trackBarMapIconSize;
mapGui.MapZoomTrackbar = trackBarMapZoom;
mapGui.MapShowInactiveObjects = checkBoxMapShowInactive;
mapGui.MapShowMario = checkBoxMapShowMario;
mapGui.MapShowObjects = checkBoxMapShowObj;
mapGui.MapShowHolp = checkBoxMapShowHolp;
mapGui.MapShowCamera = checkBoxMapShowCamera;
mapGui.MapShowFloorTriangle = checkBoxMapShowFloor;
_mapManager = new MapManager(_sm64Stream, _mapAssoc, _objectAssoc, mapGui);
_marioManager = new MarioManager(_sm64Stream, _marioData, panelMarioBorder, flowLayoutPanelMario, _mapManager);
_hudManager = new HudManager(_sm64Stream, _hudData, tabPageHud);
_miscManager = new MiscManager(_sm64Stream, _miscData, flowLayoutPanelMisc, groupBoxPuController);
_cameraManager = new CameraManager(_sm64Stream, _cameraData, panelCameraBorder, flowLayoutPanelCamera);
_triangleManager = new TriangleManager(_sm64Stream, tabPageTriangles, _triangleData);
_debugManager = new DebugManager();
// Create object manager
var objectGui = new ObjectDataGui()
{
ObjectBorderPanel = panelObjectBorder,
ObjectFlowLayout = flowLayoutPanelObject,
ObjectImagePictureBox = pictureBoxObject,
ObjAddressLabelValue = labelObjAddValue,
ObjAddressLabel = labelObjAdd,
ObjBehaviorLabel = labelObjBhvValue,
ObjectNameTextBox = textBoxObjName,
ObjSlotIndexLabel = labelObjSlotIndValue,
ObjSlotPositionLabel = labelObjSlotPosValue,
CloneButton = buttonObjClone,
MoveMarioToButton = buttonObjGoTo,
MoveToMarioButton = buttonObjRetrieve,
UnloadButton = buttonObjUnload
};
_objectManager = new ObjectManager(_sm64Stream, _objectAssoc, _objectData, objectGui);
// Create options manager
var optionGui = new OptionsGui();
optionGui.CheckBoxStartFromOne = checkBoxStartSlotIndexOne;
_optionsManager = new OptionsManager(optionGui);
// Create Object Slots
_slotManagerGui.TabControl = tabControlMain;
_slotManagerGui.LockLabelsCheckbox = checkBoxObjLockLabels;
_slotManagerGui.MapObjectToggleModeComboBox = comboBoxMapToggleMode;
_slotManagerGui.FlowLayoutContainer = flowLayoutPanelObjects;
_slotManagerGui.SortMethodComboBox = comboBoxSortMethod;
_slotManagerGui.LabelMethodComboBox = comboBoxLabelMethod;
_objectSlotManager = new ObjectSlotsManager(_sm64Stream, _objectAssoc, _objectManager, _slotManagerGui, _mapManager, _miscManager);
SetupViews();
_resizing = false;
_defaultSplitValue = splitContainerMain.SplitterDistance;
labelVersionNumber.Text = _version;
// Load process
var processes = GetAvailableProcesses();
if (processes.Count == 1)
{
if (MessageBox.Show(String.Format("Found process \"{0}\". Connect?", processes[0].ProcessName),
"Process Found", MessageBoxButtons.YesNo, MessageBoxIcon.Question) == DialogResult.Yes)
{
var processSelect = new ProcessSelection(processes[0]);
comboBoxProcessSelection.Items.Add(processSelect);
comboBoxProcessSelection.SelectedIndex = 0;
}
}
}
protected override async Task Because()
{
_processSelection = await sut.MapToModel(_snapshot, new CompoundProcessSnapshotContext(_specificBindingProcess, new SnapshotContext())) as ProcessSelection;
}
