public void ExtractEntries()
{
var entrezToHgnc = new Dictionary <string, string>
{
{ "79501", "Gene1" }
};
var ensemblToHgnc = new Dictionary <string, string>
{
{ "ENSG00000234810", "Gene2" }
};
var primateParser = new PrimateAiParser(GetStream(), GetSequenceProvider(), entrezToHgnc, ensemblToHgnc);
var items = primateParser.GetItems().ToList();
Assert.Equal(9, items.Count);
Assert.Equal("\"hgnc\":\"Gene1\",\"scorePercentile\":0.79", items[0].GetJsonString());
Assert.Equal("\"hgnc\":\"Gene2\",\"scorePercentile\":0.2", items[7].GetJsonString());
}
public void ResolveDuplicates()
{
var entrezToHgnc = new Dictionary <string, string>
{
{ "255403", "Gene1" }
};
var ensemblToHgnc = new Dictionary <string, string>
{
{ "ENSG00000234810", "Gene2" }
};
var primateParser = new PrimateAiParser(GetDuplicateItemStream(), GetSequenceProvider(), entrezToHgnc, ensemblToHgnc);
var items = primateParser.GetItems().Cast <ISupplementaryDataItem>().ToList();
var deDupItems = SuppDataUtilities.DeDuplicatePrimateAiItems(items);
Assert.Single(deDupItems);
Assert.Equal("\"hgnc\":\"Gene1\",\"scorePercentile\":0.93", deDupItems[0].GetJsonString());
}