public IHttpActionResult Put([FromBody] int id, PredictionScore score)
{
if (score == null)
{
return(InternalServerError(new Exception("Pediction score not valid")));
}
try
{
// prediction.Player = get the player from the token authentication module
OpenPredictionRepository.UpdateScore(id, score);
return(Ok());
}
catch (Exception ex)
{
// TODO: Log
return(InternalServerError(ex));
}
}
public AnnotatedTranscript(ITranscript transcript, string referenceAminoAcids, string alternateAminoAcids,
string referenceCodons, string alternateCodons, IMappedPosition mappedPosition, string hgvsCoding,
string hgvsProtein, PredictionScore sift, PredictionScore polyphen,
List <ConsequenceTag> consequences, bool?completeOverlap)
{
Transcript = transcript;
ReferenceAminoAcids = referenceAminoAcids;
AlternateAminoAcids = alternateAminoAcids;
ReferenceCodons = referenceCodons;
AlternateCodons = alternateCodons;
MappedPosition = mappedPosition;
HgvsCoding = hgvsCoding;
HgvsProtein = hgvsProtein;
Sift = sift;
PolyPhen = polyphen;
Consequences = consequences;
CompleteOverlap = completeOverlap;
}
public AnnotatedTranscript(ITranscript transcript, string referenceAminoAcids, string alternateAminoAcids,
string referenceCodons, string alternateCodons, IMappedPosition mappedPosition, string hgvsCoding,
string hgvsProtein, PredictionScore sift, PredictionScore polyphen,
IEnumerable <ConsequenceTag> consequences, IGeneFusionAnnotation geneFusionAnnotation)
{
Transcript = transcript;
ReferenceAminoAcids = referenceAminoAcids;
AlternateAminoAcids = alternateAminoAcids;
ReferenceCodons = referenceCodons;
AlternateCodons = alternateCodons;
MappedPosition = mappedPosition;
HgvsCoding = hgvsCoding;
HgvsProtein = hgvsProtein;
Sift = sift;
PolyPhen = polyphen;
Consequences = consequences;
GeneFusionAnnotation = geneFusionAnnotation;
PluginData = new List <IPluginData>();
}
private PredictionScore getScore(Prediction prediction, PredictionOutcome outcome)
{
PredictionScore score = new PredictionScore();
if (prediction.FinishDate != null)
{
var date = (DateTime)prediction.Date;
var time = ((DateTime)prediction.Time).ToLocalTime();
time = new DateTime(2013, 12, 10, time.Hour, time.Minute, 0);
if (prediction.Gender == outcome.Gender)
score.Gender = 3;
if (date.Month == outcome.Date.Month && date.Day == outcome.Date.Day)
score.Date = 5;
var timedif = (outcome.Time - time);
if (timedif.TotalHours <= 4 && timedif.TotalHours >= 0)
score.Time = 4;
if (prediction.Weight <= outcome.Weight && prediction.Weight <= (outcome.Weight + 1.5M))
score.Weight = 2;
if (prediction.Length <= outcome.Length && outcome.Length <= prediction.Length + 2M)
score.Length = 1;
}
return score;
}
