static IDataReader GetReaderForPhysicalInstance(PhysicalInstance physicalInstance)
{
// HACK get this by looking at the IDataImporter addins.
string fileName = GetLocalFileName(physicalInstance);
if (string.IsNullOrWhiteSpace(fileName))
{
return(null);
}
string ext = System.IO.Path.GetExtension(fileName).ToLower();
if (ext == ".dta")
{
return(new StataDataReader(fileName));
}
else if (ext == ".sav")
{
return(new SpssDataReader(fileName));
}
else if (ext == ".csv")
{
// TODO Use a stream and close it.
string contents = File.ReadAllText(fileName);
return(new CsvReader(new StringReader(contents), true));
}
else if (ext == ".rdata" ||
ext == ".rda")
{
// TODO
return(null);
}
return(null);
}
/// <summary>
/// Test ID 022, 023
/// Ability to Assign an Administrative Status
/// </summary>
/// <param name="dataset"></param>
/// <returns></returns>
public static void AssignAdministrativeStatus(PhysicalInstance dataset)
{
// Get the Repository API
var api = GetRepositoryApiWindows();
// Set the AdministrativeStatus on a specific version of the survey
api.CreateTag(dataset.CompositeId, "TheCurrentAdministrativeState");
}
static CodeList CreateCodeList(PhysicalInstance physicalInstance, DataRelationship dataRelationship, Variable variable, VariableStatistic stats)
{
using (IDataReader reader = GetReaderForPhysicalInstance(physicalInstance))
{
if (reader == null)
{
return(null);
}
int columnIdx = GetColumnIndex(physicalInstance, dataRelationship, variable);
if (columnIdx == -1)
{
return(null);
}
var gatherer = new DataValueFrequencyGatherer(reader);
var values = gatherer.CountValueFrequencies(columnIdx);
var codeList = new CodeList()
{
AgencyId = variable.AgencyId
};
codeList.ItemName.Copy(variable.ItemName);
codeList.Label.Copy(variable.Label);
// Clear any existing category statistics.
stats.UnfilteredCategoryStatistics.Clear();
foreach (var pair in values.OrderBy(x => x.Key))
{
string value = pair.Key;
int count = pair.Value;
// Create the code and category.
var category = new Category()
{
AgencyId = variable.AgencyId
};
var code = new Code()
{
AgencyId = variable.AgencyId
};
code.Value = value;
code.Category = category;
codeList.Codes.Add(code);
// Update the statistics with category frequency.
var catStats = new CategoryStatistics();
catStats.CategoryValue = value.ToString();
catStats.Frequency = count;
stats.UnfilteredCategoryStatistics.Add(catStats);
}
return(codeList);
}
}
static string GetLocalFileName(PhysicalInstance physicalInstance)
{
if (physicalInstance == null ||
physicalInstance.FileIdentifications == null ||
physicalInstance.FileIdentifications.Count == 0)
{
return(string.Empty);
}
var localFileID = physicalInstance.FileIdentifications[0];
string fileName = string.Empty;
if (localFileID.Uri != null)
{
fileName = localFileID.Uri.ToString();
}
if (fileName == null)
{
return(null);
}
string fullFileName = null;
if (fileName.StartsWith("file:"))
{
fileName = fileName.Replace("file:///", string.Empty).Replace("file:", string.Empty);
}
if (!string.IsNullOrEmpty(fileName))
{
if (System.IO.File.Exists(fileName))
{
fullFileName = fileName;
return(fullFileName);
}
else
{
Console.WriteLine("Test");
}
}
else
{
Console.WriteLine("test");
}
return(null);
}
/// <summary>
/// Update versions and references to a Variable along this path:
/// PhysicalInstance
/// DataRelationship
/// Variable
/// VariableStatistic
/// Variable
/// </summary>
/// <param name="variable"></param>
public static void UpdateVersionsAndSave(Variable variable, PhysicalInstance physicalInstance, DataRelationship dataRelationship, VariableStatistic variableStatistic)
{
var client = RepositoryHelper.GetClient();
var now = DateTime.UtcNow;
var itemsToRegister = new List <IVersionable>();
itemsToRegister.Add(variable);
itemsToRegister.Add(physicalInstance);
itemsToRegister.Add(dataRelationship);
// Increase version of the variable.
variable.Version++;
variable.VersionDate = now;
// Increase the version and reference of the PhysicalInstance that
// references the DataRelationship and VariableStatistic.
physicalInstance.Version++;
physicalInstance.VersionDate = now;
// Increase the version and reference of the DataRelationship that references the variable.
dataRelationship.Version++;
dataRelationship.VersionDate = now;
// Update the reference to the variable.
var variableInDataRelationship = dataRelationship.LogicalRecords
.SelectMany(x => x.VariablesInRecord)
.Where(x => x.Identifier == variable.Identifier)
.FirstOrDefault();
variableInDataRelationship.Version = variable.Version;
variableInDataRelationship.VersionDate = now;
// Increase the version and reference of hte VariableStatistic that references the Variable.
if (variableStatistic != null)
{
variableStatistic.Version++;
variableStatistic.VersionDate = now;
variableStatistic.VariableReference.Version = variable.Version;
itemsToRegister.Add(variableStatistic);
}
// Register all the changes.
var options = new CommitOptions();
options.NamedOptions.Add("RegisterOrReplace");
client.RegisterItems(itemsToRegister, options);
}
private static void CreateHtmlAndPdf(PhysicalInstance dataset)
{
string resourcePath = Path.Combine("Resources", "icons", "types");
string baseFileName = "codebook";
string addinsPath = Path.Combine(
Environment.GetFolderPath(Environment.SpecialFolder.ApplicationData),
"Algenta",
"Colectica",
"Addins");
// Set some options for the report.
var options = new ReportOptions();
options.IsAccessibilityMode = false;
var builder = new ReportBuilder();
// Use the custom codebook format.
builder.Builders = new List <IDocumentationBuilder>();
builder.Builders.Add(new SampleCustomCodebookBuilder());
// Create English PDF.
MultilingualString.CurrentCulture = "en";
byte[] englishPdfBytes = builder.CreatePdf(dataset, resourcePath, addinsPath, options, null, null);
string englishPdfFileName = $"{baseFileName}_en.pdf";
File.WriteAllBytes(englishPdfFileName, englishPdfBytes);
// Create English HTML.
string englishHtml = builder.CreateHtml(dataset, resourcePath, addinsPath, options, null, null);
string englishHtmlFileName = $"{baseFileName}_en.html";
File.WriteAllText(englishHtmlFileName, englishHtml);
// Create French PDF.
MultilingualString.CurrentCulture = "fr";
byte[] frenchPdfBytes = builder.CreatePdf(dataset, resourcePath, addinsPath, options, null, null);
string frenchPdfFileName = $"{baseFileName}_fr.pdf";
File.WriteAllBytes(frenchPdfFileName, frenchPdfBytes);
// Create French HTML.
string frenchHtml = builder.CreateHtml(dataset, resourcePath, addinsPath, options, null, null);
string frenchHtmlFileName = $"{baseFileName}_fr.html";
File.WriteAllText(frenchHtmlFileName, frenchHtml);
}
public void Convert(PhysicalInstance pi)
{
if (pi == null)
{
throw new ArgumentNullException(nameof(pi));
}
if (pi.RecordLayouts.Count == 0)
{
return;
}
// Create a single DataRelationship for the PhysicalInstance.
// Within this, we will add one LogicalRecord per old RecordLayout.
var dataRelationship = new DataRelationship()
{
AgencyId = pi.AgencyId
};
pi.DataRelationships.Add(dataRelationship);
// For each record layout, add the variables to a new DataRelationship.
foreach (var recordLayout in pi.RecordLayouts)
{
// Create a LogicalRecord with the same descriptive information
// as the RecordLayout we are migrating.
var logicalRecord = new LogicalRecord {
AgencyId = pi.AgencyId
};
dataRelationship.LogicalRecords.Add(logicalRecord);
logicalRecord.ItemName.Copy(recordLayout.ItemName);
logicalRecord.Label.Copy(recordLayout.Label);
logicalRecord.Description.Copy(recordLayout.Description);
// For each DataItem in the RecordLayout, add a VariablesInRecord entry
// to the LogicalRecord.
foreach (var dataItem in recordLayout.DataItems)
{
logicalRecord.VariablesInRecord.Add(dataItem.Variable);
}
}
// Remove the old RecordLayouts.
pi.RecordLayouts.Clear();
}
public static void UpdateVariableProperty(Variable variable, PhysicalInstance physicalInstance, DataRelationship dataRelationship, VariableStatistic variableStatistic, string propertyName, string value)
{
if (propertyName == "ItemName")
{
variable.ItemName.Current = value;
}
else if (propertyName == "Label")
{
variable.Label.Current = value;
}
else if (propertyName == "Description")
{
variable.Description.Current = value;
}
else if (propertyName == "AnalysisUnit")
{
variable.AnalysisUnit = value;
}
else if (propertyName == "ResponseUnit")
{
variable.ResponseUnit = value;
}
else if (propertyName == "RepresentationType")
{
if (value == "Text" && variable.RepresentationType != RepresentationType.Text)
{
// Clear any existing category statistics.
variableStatistic.UnfilteredCategoryStatistics.Clear();
variable.RepresentationType = RepresentationType.Text;
}
else if (value == "Numeric" && variable.RepresentationType != RepresentationType.Numeric)
{
// Clear any existing category statistics.
variableStatistic.UnfilteredCategoryStatistics.Clear();
variable.RepresentationType = RepresentationType.Numeric;
}
else if (value == "Code" && variable.RepresentationType != RepresentationType.Code)
{
variable.RepresentationType = RepresentationType.Code;
CreateCodeList(variable, physicalInstance, dataRelationship, variableStatistic);
}
}
}
static void CreateCodeList(Variable variable, PhysicalInstance physicalInstance, DataRelationship dataRelationship, VariableStatistic variableStatistic)
{
// Create and save a code list with all the unique values.
var codeList = CreateCodeList(physicalInstance, dataRelationship, variable, variableStatistic);
variable.CodeRepresentation.Codes = codeList;
if (codeList != null)
{
var gatherer = new ItemGathererVisitor();
codeList.Accept(gatherer);
var client = RepositoryHelper.GetClient();
var repoOptions = new CommitOptions();
repoOptions.NamedOptions.Add("RegisterOrReplace");
client.RegisterItems(gatherer.FoundItems, repoOptions);
}
}
static int GetColumnIndex(PhysicalInstance physicalInstance, DataRelationship dataRelationship, Variable variable)
{
var logicalRecord = dataRelationship.LogicalRecords.FirstOrDefault();
if (logicalRecord == null)
{
return(-1);
}
var variableInRecord = logicalRecord.VariablesInRecord
.Where(x => x.CompositeId == variable.CompositeId)
.FirstOrDefault();
if (variableInRecord == null)
{
return(-1);
}
return(logicalRecord.VariablesInRecord.IndexOf(variableInRecord));
}
/// <summary>
/// Test ID 024
/// Sample permissions for administrative statuses
/// </summary>
/// <param name="dataset"></param>
public static void AssignPermissions(PhysicalInstance dataset)
{
// Get the Repository API
var api = GetRepositoryApiWindows();
// create a new item permission for the survey
var permission = new ItemPermission();
permission.Permission = PermissionType.ExclusiveWrite;
permission.RoleName = "*****@*****.**";
//permission.RoleName = "yourdomain\\username";
permission.Identifier = dataset.Identifier;
permission.AgencyId = dataset.AgencyId;
// apply the permission on the Repository
var roles = new RepositorySecurityContext();
roles.IdentifierPermissions.Add(permission);
api.AddPermissions(roles);
}
/// <summary>
/// Test ID 018, 019, 020
/// Document edit/version processing metdata
/// </summary>
/// <param name="dataset"></param>
/// <returns></returns>
public static async Task ModifyAndVersionDataset(PhysicalInstance dataset)
{
// update the dataset description
dataset.Description["en"] = "Description of the dataset";
dataset.Description["fr"] = "Description de l'ensemble de données";
// add descriptions to variables. All the same content in this sample
var variables = dataset.DataRelationships.SelectMany(x => x.LogicalRecords).SelectMany(l => l.VariablesInRecord);
int position = 1;
foreach (Variable variable in variables)
{
variable.Description["en"] = $"This variable is in position {position}.";
variable.Description["fr"] = $"Cette variable est en position {position}.";
position++;
}
// The test from 001, 002, and 003 will find the changed items and add them to the Repository
// The Repository will record new versions of existing items, and update all the references to the correct version
await RegisterItems(dataset);
}
public ActionResult Deserialize(SerializeModel model, string command, HttpPostedFileBase postedFile)
{
if (postedFile != null)
{
try
{
string fileExtension = Path.GetExtension(postedFile.FileName);
if (fileExtension != ".xml")
{
return(View(model));
}
string row;
using (var sreader = new StreamReader(postedFile.InputStream))
{
row = sreader.ReadLine();
}
model.Xml = row;
xml = row;
return(View(model));
}
catch (Exception ex)
{
ViewBag.Message = ex.Message;
}
}
switch (command)
{
case "Process":
PhysicalInstance oInfoDTO = new PhysicalInstance();
model.XmlValues = (PhysicalInstance)XMLToObject(xml, oInfoDTO);
return(View(model));
default:
break;
}
return(View(model));
}
/// <summary>
/// Test ID 025, 026, 027, 028
/// Render PDF and HTML
/// </summary>
/// <param name="dataset"></param>
public static void CreateHtmlAndPdf(PhysicalInstance dataset)
{
string resourcePath = Path.Combine("Resources", "icons", "types");
string baseFileName = "codebook";
// Set some options for the report.
var options = new ReportOptions();
options.IsAccessibilityMode = false;
var builder = new ReportBuilder();
// Create English PDF.
MultilingualString.CurrentCulture = "en";
byte[] englishPdfBytes = builder.CreatePdf(dataset, resourcePath, null, options, null, null);
string englishPdfFileName = $"{baseFileName}_en.pdf";
File.WriteAllBytes(englishPdfFileName, englishPdfBytes);
// Create English HTML.
string englishHtml = builder.CreateHtml(dataset, resourcePath, null, options, null, null);
string englishHtmlFileName = $"{baseFileName}_en.html";
File.WriteAllText(englishHtmlFileName, englishHtml);
// Create French PDF.
MultilingualString.CurrentCulture = "fr";
byte[] frenchPdfBytes = builder.CreatePdf(dataset, resourcePath, null, options, null, null);
string frenchPdfFileName = $"{baseFileName}_fr.pdf";
File.WriteAllBytes(frenchPdfFileName, frenchPdfBytes);
// Create French HTML.
string frenchHtml = builder.CreateHtml(dataset, resourcePath, null, options, null, null);
string frenchHtmlFileName = $"{baseFileName}_fr.html";
File.WriteAllText(frenchHtmlFileName, frenchHtml);
}
void GetReferencingItems(RepositoryClientBase client, IdentifierTriple variableId, out PhysicalInstance physicalInstance, out DataRelationship dataRelationship, out VariableStatistic variableStatistic)
{
dataRelationship = null;
variableStatistic = null;
physicalInstance = VariableMapper.GetPhysicalInstanceWithVariable(variableId, client);
foreach (var dr in physicalInstance.DataRelationships)
{
client.PopulateItem(dr, false, ChildReferenceProcessing.Populate);
if (dr.LogicalRecords
.SelectMany(x => x.VariablesInRecord)
.Any(x => x.CompositeId == variableId))
{
dataRelationship = dr;
}
}
foreach (var stats in physicalInstance.Statistics)
{
client.PopulateItem(stats);
if (stats.AgencyId == variableId.AgencyId &
stats.VariableReference.Identifier == variableId.Identifier)
{
variableStatistic = stats;
break;
}
}
}
public void Map(ManagedFile file, PhysicalInstance pi)
{
if (file == null)
{
throw new ArgumentNullException("file");
}
if (pi == null)
{
throw new ArgumentNullException("physicalInstance");
}
// Map properties from the ManagedFile to DDI.
pi.SetUserId("FileNumber", file.Number?.ToString());
pi.DublinCoreMetadata.Title.Current = file.Title;
pi.DublinCoreMetadata.AlternateTitle.Current = file.PublicName;
var fileId = pi.FileIdentifications.FirstOrDefault();
if (fileId == null)
{
fileId = new DataFileIdentification();
pi.FileIdentifications.Add(fileId);
}
Uri uri;
bool gotUri = Uri.TryCreate(file.PersistentLink, UriKind.RelativeOrAbsolute, out uri);
if (gotUri)
{
fileId.Uri = uri;
}
pi.SetUserAttribute("PersistentLinkDate", file.PersistentLinkDate?.ToString());
pi.SetUserAttribute("FileType", file.Type);
pi.SetUserAttribute("FormatName", file.FormatName);
pi.SetUserAttribute("FormatId", file.FormatId);
pi.SetUserAttribute("Size", file.Size.ToString());
pi.SetUserAttribute("CreationDate", file.CreationDate);
pi.SetUserAttribute("KindOfData", file.KindOfData);
pi.DublinCoreMetadata.Source.Current = file.Source;
pi.SetUserAttribute("SourceInformation", file.SourceInformation);
pi.DublinCoreMetadata.Rights.Current = file.Rights;
fileId.IsPublic = file.IsPublicAccess;
pi.SetUserAttribute("UploadedDate", file.UploadedDate);
pi.SetUserAttribute("ExternalDatabase", file.ExternalDatabase);
pi.SetUserAttribute("Software", file.Software);
pi.SetUserAttribute("SoftwareVersion", file.SoftwareVersion);
pi.SetUserAttribute("Hardware", file.Hardware);
var fingerprint = pi.Fingerprints.FirstOrDefault();
if (fingerprint == null)
{
fingerprint = new Fingerprint();
pi.Fingerprints.Add(fingerprint);
}
fingerprint.FingerprintValue = file.Checksum;
fingerprint.AlgorithmSpecification = file.ChecksumMethod;
pi.SetUserAttribute("ChecksumDate", file.ChecksumDate);
pi.SetUserAttribute("VirusCheckOutcome", file.VirusCheckOutcome);
pi.SetUserAttribute("VirusCheckMethod", file.VirusCheckMethod);
pi.SetUserAttribute("VirusCheckDate", file.VirusCheckDate);
pi.SetUserAttribute("AcceptedDate", file.AcceptedDate);
pi.SetUserAttribute("CertifiedDate", file.CertifiedDate);
}
public ResourcePackage Import(string path, string agencyId)
{
this.harmonizingCache = new HarmonizingCache(MultilingualString.CurrentCulture);
var resourcePackage = new ResourcePackage();
resourcePackage.AgencyId = agencyId;
logger.Debug("Importing RData");
if (string.IsNullOrEmpty(path))
{
throw new ArgumentNullException("fileName");
}
if (!File.Exists(path))
{
throw new ArgumentException("The specified file must exist");
}
string fileNameWithExtension = Path.GetFileName(path);
string fileNameOnly = Path.GetFileNameWithoutExtension(path);
logger.Debug("RData import file: " + fileNameOnly);
resourcePackage.DublinCoreMetadata.Title.Current = fileNameOnly;
// Create the PhysicalInstance.
var physicalInstance = new PhysicalInstance()
{
AgencyId = agencyId
};
resourcePackage.PhysicalInstances.Add(physicalInstance);
physicalInstance.DublinCoreMetadata.Title.Current = fileNameOnly;
// File location
if (path != null)
{
DataFileIdentification fileID = new DataFileIdentification();
Uri uri;
if (Uri.TryCreate(path, UriKind.RelativeOrAbsolute, out uri))
{
fileID.Uri = uri;
}
fileID.Path = path;
physicalInstance.FileIdentifications.Add(fileID);
}
// Create the DataRelationship.
var dataRelationship = new DataRelationship();
physicalInstance.DataRelationships.Add(dataRelationship);
dataRelationship.AgencyId = agencyId;
dataRelationship.Label.Current = fileNameOnly;
// Load the file into R.
string pathForR = path.Replace("\\", "/");
engine.Evaluate(string.Format("load('{0}')", pathForR));
// Find all the data frames.
var dataFrames = GetDataFrames();
// For each data frame in the RData file, create a LogicalRecord.
foreach (var pair in dataFrames)
{
string name = pair.Key;
var dataFrame = pair.Value;
// TODO This should be tracked per record, not PhysicalInstance.
physicalInstance.FileStructure.CaseQuantity = dataFrame.RowCount;
var logicalRecord = new LogicalRecord()
{
AgencyId = agencyId
};
dataRelationship.LogicalRecords.Add(logicalRecord);
logicalRecord.Label.Current = name;
List <string> variableLabels = null;
var variableLabelsExpr = dataFrame.GetAttribute("var.labels");
if (variableLabelsExpr != null)
{
var labelVector = variableLabelsExpr.AsVector();
variableLabels = new List <string>(labelVector.Select(x => (string)x));
}
for (int i = 0; i < dataFrame.ColumnCount; i++)
{
string columnName = dataFrame.ColumnNames[i];
var column = dataFrame[i];
var variable = new Variable()
{
AgencyId = agencyId
};
logicalRecord.VariablesInRecord.Add(variable);
// Name
variable.ItemName.Current = columnName;
// Label
if (variableLabels != null)
{
variable.Label.Current = variableLabels[i];
}
// Type
if (column.Type == RDotNet.Internals.SymbolicExpressionType.NumericVector)
{
variable.RepresentationType = RepresentationType.Numeric;
variable.Additivity = AdditivityType.Stock;
}
else if (column.Type == RDotNet.Internals.SymbolicExpressionType.IntegerVector)
{
if (column.IsFactor())
{
variable.RepresentationType = RepresentationType.Code;
string[] factors = column.AsFactor().GetLevels();
variable.CodeRepresentation.Codes = GetCodeList(factors, agencyId, resourcePackage);
}
else
{
variable.RepresentationType = RepresentationType.Numeric;
variable.NumericRepresentation.NumericType = NumericType.Integer;
variable.Additivity = AdditivityType.Stock;
}
}
else if (column.Type == RDotNet.Internals.SymbolicExpressionType.CharacterVector)
{
variable.RepresentationType = RepresentationType.Text;
}
}
}
return(resourcePackage);
}
public static string CreateOrUpdatePhysicalInstanceForFile <TImporter>(Guid fileId, string filePath, string agencyId, PhysicalInstance existingPhysicalInstance)
where TImporter : IDataImporter, new()
{
var logger = LogManager.GetLogger("Curation");
logger.Debug("File import: " + fileId);
IDataImporter importer = new TImporter();
var client = RepositoryHelper.GetClient();
PhysicalInstance physicalInstance = existingPhysicalInstance;
// For PhysicalInstances that do not exist yet, create from scratch.
if (physicalInstance == null)
{
// Extract metadata.
ResourcePackage rp = importer.Import(filePath, agencyId);
logger.Debug("Imported metadata from data file.");
if (rp.PhysicalInstances.Count == 0)
{
logger.Debug("No dataset could be extracted from SPSS");
return(string.Empty);
}
physicalInstance = rp.PhysicalInstances[0];
physicalInstance.Identifier = fileId;
}
else
{
// If there is an existing PhysicalInstance, update it from the data file.
var updateCommand = new UpdatePhysicalInstanceFromFile();
updateCommand.DataImporters = new List <IDataImporter>();
updateCommand.DataImporters.Add(new SpssImporter());
updateCommand.DataImporters.Add(new StataImporter());
updateCommand.DataImporters.Add(new SasImporter());
updateCommand.DataImporters.Add(new RDataImporter());
updateCommand.DataImporters.Add(new CsvImporter());
var context = new Algenta.Colectica.ViewModel.Commands.VersionableCommandContext();
// Update the PhysicalInstance from the data file.
var repoNode = new RepositoryNode(client, null);
var repoItemNode = new RepositoryItemNode(existingPhysicalInstance.GetMetadata(), repoNode, client);
context.Node = repoItemNode;
context.Item = physicalInstance;
try
{
updateCommand.Execute(context);
physicalInstance.Version++;
foreach (var item in updateCommand.Result.ModifiedItems)
{
item.Version++;
}
}
catch (Exception ex)
{
logger.Error("Problem updating PhysicalInstance.", ex);
return("Problem updating PhysicalInstance. " + ex.Message);
}
}
// Calculate summary statistics, for both new and updated files.
try
{
logger.Debug("Calculating summary statistics");
var calculator = new PhysicalInstanceSummaryStatisticComputer();
SummaryStatisticsOptions options = new SummaryStatisticsOptions()
{
CalculateQuartiles = true
};
var stats = calculator.ComputeStatistics(importer, filePath, physicalInstance,
physicalInstance.FileStructure.CaseQuantity, options, (percent, message) => { });
logger.Debug("Done calculating summary statistics");
if (stats != null)
{
physicalInstance.Statistics.Clear();
foreach (VariableStatistic stat in stats)
{
physicalInstance.Statistics.Add(stat);
}
}
}
catch (Exception ex)
{
logger.Error("Problem calculating summary statistics.", ex);
return("Problem calculating summary statistics. " + ex.Message);
}
// Register all items that were created with the repository.
DirtyItemGatherer visitor = new DirtyItemGatherer(false, true);
physicalInstance.Accept(visitor);
logger.Debug("Setting agency IDs");
// The static default agency id is not thread safe, so set it explicitly here
foreach (var item in visitor.DirtyItems)
{
item.AgencyId = agencyId;
}
logger.Debug("Done setting agency IDs");
logger.Debug("Registering items with the repository");
var repoOptions = new Algenta.Colectica.Model.Repository.CommitOptions();
repoOptions.NamedOptions.Add("RegisterOrReplace");
client.RegisterItems(visitor.DirtyItems, repoOptions);
logger.Debug("Done registering items with the repository");
logger.Debug("Done with CreatePhysicalInstanceForFile");
return(string.Empty);
}
