public void TestSerializePeptides()
{
var srmDocument = new SrmDocument(SrmSettingsList.GetDefault());
string strProteinSequence = string.Join(string.Empty,
"MSLSSKLSVQDLDLKDKRVFIRVDFNVPLDGKKITSNQRIVAALPTIKYVLEHHPRYVVL",
"ASHLGRPNGERNEKYSLAPVAKELQSLLGKDVTFLNDCVGPEVEAAVKASAPGSVILLEN",
"LRYHIEEEGSRKVDGQKVKASKEDVQKFRHELSSLADVYINDAFGTAHRAHSSMVGFDLP",
"QRAAGFLLEKELKYFGKALENPTRPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAF",
"TFKKVLENTEIGDSIFDKAGAEIVPKLMEKAKAKGVEVVLPVDFIIADAFSADANTKTVT",
"DKEGIPAGWQGLDNGPESRKLFAATVAKAKTIVWNGPPGVFEFEKFAAGTKALLDEVVKS",
"SAAGNTVIIGGGDTATVAKKYGVTDKISHVSTGGGASLELLEGKELPGVAFLSEKK");
var fastaSequence = new FastaSequence("YCR012W", "PGK1", null, strProteinSequence);
var peptideGroup = new PeptideGroupDocNode(fastaSequence, fastaSequence.Name, fastaSequence.Description, new PeptideDocNode[0]);
Assert.AreEqual(true, peptideGroup.AutoManageChildren);
peptideGroup = peptideGroup.ChangeSettings(srmDocument.Settings, SrmSettingsDiff.ALL);
srmDocument = (SrmDocument)srmDocument.ChangeChildren(new DocNode[] { peptideGroup });
Assert.AreNotEqual(0, srmDocument.PeptideCount);
Assert.AreNotEqual(0, srmDocument.MoleculeTransitionCount);
Assert.IsFalse(CompactFormatOption.NEVER.UseCompactFormat(srmDocument));
Assert.IsTrue(CompactFormatOption.ALWAYS.UseCompactFormat(srmDocument));
VerifyRoundTrips(srmDocument);
VerifyRoundTrips(AddSmallMolecules(srmDocument));
}
