private IPKSimMacroCommand updateParameters(PathCache <IParameter> allParameters, ParameterVariationSet parameterVariationSet)
{
var macroCommand = new PKSimMacroCommand();
foreach (var parameterValue in parameterVariationSet.ParameterValues)
{
var parameterPath = parameterValue.ParameterPath;
var parameter = allParameters[parameterPath];
if (parameter == null)
{
//try with adding the name of the simulation at first
parameterPath = $"{Simulation.Name}{ObjectPath.PATH_DELIMITER}{parameterPath}";
parameter = allParameters[parameterPath];
if (parameter == null)
{
_logger.AddWarning($"Parameter with path '{parameterValue.ParameterPath}' not found!");
continue;
}
}
_logger.AddDebug($"Parameter '{parameterValue.ParameterPath}' value set from '{parameter.Value} to '{parameterValue.Value}'.");
macroCommand.Add(new SetParameterValueCommand(parameter, parameterValue.Value));
}
return(macroCommand.Run(_executionContext));
}
public bool Delete <TBuildingBlock>(IReadOnlyList <TBuildingBlock> buildingBlocksToDelete) where TBuildingBlock : class, IPKSimBuildingBlock
{
if (!buildingBlocksToDelete.Any())
{
return(true);
}
var buildingBlockType = _entityTask.TypeFor(buildingBlocksToDelete.First());
foreach (var buildingBlockToDelete in buildingBlocksToDelete)
{
var simulationsUsingBuildingBlockToDelete = _buildingBlockInSimulationManager.SimulationsUsing(buildingBlockToDelete).ToList();
if (simulationsUsingBuildingBlockToDelete.Any())
{
throw new CannotDeleteBuildingBlockException(buildingBlockToDelete.Name, buildingBlockType, simulationsUsingBuildingBlockToDelete);
}
}
var viewResult = _dialogCreator.MessageBoxYesNo(PKSimConstants.UI.ReallyDeleteObjectOfType(buildingBlockType, buildingBlocksToDelete.AllNames().ToArray()));
if (viewResult == ViewResult.No)
{
return(false);
}
buildingBlocksToDelete.OfType <Simulation>().Each(simulation => _simulationReferenceUpdater.RemoveSimulationFromParameterIdentificationsAndSensitivityAnalyses(simulation));
var macoCommand = new PKSimMacroCommand
{
CommandType = PKSimConstants.Command.CommandTypeDelete,
ObjectType = buildingBlockType,
BuildingBlockType = buildingBlockType,
Description = PKSimConstants.Command.ObjectsDeletedFromProject(buildingBlockType),
};
buildingBlocksToDelete.Each(x => macoCommand.Add(DeleteCommand(x)));
AddCommandToHistory(macoCommand.Run(_executionContext));
buildingBlocksToDelete.Each(RemovePresenterSettings);
return(true);
}
public IPKSimCommand SetTargetOrgan(ISchemaItem schemaItem, string targetOrgan, string targetCompartment)
{
var organCommand = new SetSchemaItemTargetOrganCommand(schemaItem, targetOrgan, _executionContext);
if (schemaItem.TargetCompartment == targetCompartment)
{
return(organCommand.Run(_executionContext));
}
var macroCommand = new PKSimMacroCommand {
CommandType = organCommand.CommandType, Description = organCommand.Description, ObjectType = organCommand.ObjectType
};
organCommand.Visible = false;
var compartmentCommand = new SetSchemaItemTargetCompartmentCommand(schemaItem, targetCompartment, _executionContext)
{
Visible = false
};
macroCommand.Add(organCommand, compartmentCommand);
return(macroCommand.Run(_executionContext));
}
private ICommand synchronizeBuildingBlocks(IPKSimBuildingBlock templateBuildingBlock, IPKSimMacroCommand updateTemplateParametersCommand)
{
var simulationSubject = templateBuildingBlock as ISimulationSubject;
//For now, deal with update from Individual or Population into Expression Profile
if (simulationSubject == null)
{
return(new PKSimEmptyCommand());
}
var allExpressionProfileParameterValueCommand = updateTemplateParametersCommand.All()
.OfType <SetExpressionProfileValueCommand>()
.ToList();
if (!allExpressionProfileParameterValueCommand.Any())
{
return(new PKSimEmptyCommand());
}
var expressionProfilesToUpdate = new HashSet <ExpressionProfile>();
var macroCommand = new PKSimMacroCommand();
//We have some commands related to expression profile. We need to update the expression profile
foreach (var parameterCommand in allExpressionProfileParameterValueCommand)
{
var simulationSubjectParameter = _executionContext.Get <IParameter>(parameterCommand.ParameterId);
if (simulationSubjectParameter == null)
{
continue;
}
//This should be the id of the parameter in the expression profile
var expressionProfileParameterId = simulationSubjectParameter.Origin.ParameterId;
var expressionProfileParameter = _executionContext.Get <IParameter>(expressionProfileParameterId);
if (expressionProfileParameter == null)
{
continue;
}
var expressionProfile = _executionContext.BuildingBlockContaining(expressionProfileParameter) as ExpressionProfile;
if (expressionProfile == null)
{
continue;
}
expressionProfilesToUpdate.Add(expressionProfile);
//We do not update the simulation subject. It will be done at the end of the loop
var command = new SetExpressionProfileValueCommand(expressionProfileParameter, simulationSubjectParameter.Value, updateSimulationSubjects: false);
macroCommand.Add(command);
}
macroCommand.Run(_executionContext);
_executionContext.UpdateBuildingBlockPropertiesInCommand(macroCommand, templateBuildingBlock);
//Now that our expression profile are updated, we need to trigger the synchronization in all building blocks
expressionProfilesToUpdate.Each(x => _expressionProfileUpdater.SynchronizeAllSimulationSubjectsWithExpressionProfile(x));
return(macroCommand);
}