//public string HelpOutput { get; }
//public string[] HelpSupplTables { get; }
//public int NumSupplTables { get; }
//public string[] HelpDocuments { get; }
//public int NumDocuments { get; }
public override Parameters GetParameters(IMatrixData mdata, ref string errString)
{
Parameters parameters = new Parameters
(
PECAParameters.GetWorkingDir()
);
parameters.AddParameterGroup(PECAParameters.GetAboutData(), "About Data", false);
parameters.AddParameterGroup(PECAParameters.GetFeatures(), "Features", false);
parameters.AddParameterGroup(PECAParameters.GetModule(), PECAParameters.network + " Info", false);
parameters.AddParameterGroup(PECAParameters.SelectConditionalData(mdata), "Select Data", true);
parameters.AddParameterGroup(PECAParameters.GetMCMCParams(), "MCMC Parameters", false);
return(parameters);
}
//public string HelpOutput { get; }
//public string[] HelpSupplTables { get; }
//public int NumSupplTables { get; }
//public string[] HelpDocuments { get; }
//public int NumDocuments { get; }
public override Parameters GetParameters(IMatrixData mdata, ref string errString)
{
string[] expSeriesNames = new string[] { PECAParameters.pecaRSeries1, PECAParameters.pecaRSeries2 };
string[] expSeriesHelp = new string[] { "mRNA Data", "'artificial' protein expressions" };
Parameters parameters = new Parameters
(
PECAParameters.GetWorkingDir()
);
parameters.AddParameterGroup(PECAParameters.GetAboutDataWithTP(), "About Data", false);
parameters.AddParameterGroup(PECAParameters.GetFeatures(), "Features", false);
parameters.AddParameterGroup(PECAParameters.GetConditionalModule(), "Gene Set Analysis", false);
parameters.AddParameterGroup(PECAParameters.SelectMultipleData(mdata, expSeriesNames, expSeriesHelp), "Select Data", true);
parameters.AddParameterGroup(PECAParameters.GetMCMCParams(), "MCMC Parameters", false);
return(parameters);
}
//public string HelpOutput { get; }
//public string[] HelpSupplTables { get; }
//public int NumSupplTables { get; }
//public string[] HelpDocuments { get; }
//public int NumDocuments { get; }
public override Parameters GetParameters(IMatrixData mdata, ref string errString)
{
string[] expSeriesNames = new string[] { PECAParameters.pecaPSSeries1, PECAParameters.pecaPSSeries2, PECAParameters.pecaPSSeries3 };
string[] expSeriesHelp = new string[] { "mRNA Data", "the channel representing degradation of pre-existing proteins", "the channel representing synthesis of new proteins" };
Parameters parameters = new Parameters
(
PECAParameters.GetWorkingDir()
);
parameters.AddParameterGroup(PECAParameters.GetAboutDataWithTP(), "About Data", false);
parameters.AddParameterGroup(PECAParameters.GetFeatures(), "Features", false);
parameters.AddParameterGroup(PECAParameters.GetConditionalModule(), "Gene Set Analysis", false);
parameters.AddParameterGroup(PECAParameters.SelectMultipleData(mdata, expSeriesNames, expSeriesHelp), "Select Data", true);
parameters.AddParameterGroup(PECAParameters.GetMCMCParams(), "MCMC Parameters", false);
return(parameters);
}
